Wall clock time and date at job start Tue Mar 31 2020 03:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50694 * 120.00185 * 2 1 4 4 H 1.09000 * 109.47046 * 0.02562 * 3 2 1 5 5 C 1.52995 * 109.47490 * 120.00250 * 3 2 1 6 6 C 1.52999 * 109.47301 * 295.00325 * 5 3 2 7 7 C 1.53003 * 109.47326 * 240.00605 * 3 2 1 8 8 C 1.50701 * 109.47308 * 64.99679 * 7 3 2 9 9 O 1.21279 * 119.99919 * 0.02562 * 8 7 3 10 10 N 1.34777 * 119.99791 * 180.02562 * 8 7 3 11 11 C 1.47428 * 125.64359 * 179.97438 * 10 8 7 12 12 C 1.54905 * 104.83005 * 204.16353 * 11 10 8 13 13 H 1.09004 * 111.00717 * 81.06589 * 12 11 10 14 14 C 1.52998 * 111.00757 * 204.91596 * 12 11 10 15 15 C 1.55162 * 101.58494 * 322.99378 * 12 11 10 16 16 H 1.08995 * 110.86872 * 277.06330 * 15 12 11 17 17 N 1.46499 * 110.72136 * 153.86398 * 15 12 11 18 18 C 1.36931 * 120.00122 * 160.02424 * 17 15 12 19 19 H 1.08002 * 120.00098 * 0.02562 * 18 17 15 20 20 C 1.38812 * 120.00429 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99535 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00187 * 180.27849 * 20 18 17 23 23 H 1.48497 * 109.47173 * 179.72427 * 22 20 18 24 24 H 1.48506 * 109.46866 * 299.71963 * 22 20 18 25 25 H 1.48501 * 109.47438 * 59.72083 * 22 20 18 26 26 C 1.47017 * 125.65077 * 0.02755 * 10 8 7 27 27 H 1.08000 * 120.00050 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00005 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.00005 * 180.02562 * 2 1 3 30 30 H 1.09007 * 109.46895 * 55.00006 * 5 3 2 31 31 H 1.08999 * 109.47643 * 175.00167 * 5 3 2 32 32 H 1.08996 * 109.47752 * 179.97438 * 6 5 3 33 33 H 1.09001 * 109.46909 * 300.00102 * 6 5 3 34 34 H 1.09001 * 109.47244 * 59.99793 * 6 5 3 35 35 H 1.09000 * 109.46763 * 304.99423 * 7 3 2 36 36 H 1.08997 * 109.47217 * 184.99770 * 7 3 2 37 37 H 1.09001 * 110.36863 * 323.00503 * 11 10 8 38 38 H 1.09000 * 110.36244 * 85.21986 * 11 10 8 39 39 H 1.09000 * 109.47369 * 172.19661 * 14 12 11 40 40 H 1.08999 * 109.47009 * 292.20242 * 14 12 11 41 41 H 1.09002 * 109.46507 * 52.19707 * 14 12 11 42 42 H 0.97001 * 119.99790 * 340.01941 * 17 15 12 43 43 H 0.97005 * 119.99717 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.88283 * 59.48847 * 26 10 8 45 45 H 1.09004 * 110.01221 * 298.39274 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3552 2.1335 0.0005 5 6 2.9431 1.3861 1.2491 6 6 2.0566 1.4306 2.4953 7 6 2.9430 1.3862 -1.2493 8 6 2.0696 1.4301 -2.4766 9 8 0.8625 1.4000 -2.3633 10 7 2.6299 1.5028 -3.7002 11 6 1.8978 1.5516 -4.9789 12 6 2.8991 1.0110 -6.0300 13 1 2.9217 -0.0788 -6.0238 14 6 2.5689 1.5423 -7.4262 15 6 4.2396 1.5980 -5.5142 16 1 4.3694 2.6257 -5.8532 17 7 5.3678 0.7668 -5.9413 18 6 6.6338 1.2884 -5.9603 19 1 6.8006 2.3123 -5.6601 20 6 7.7029 0.5010 -6.3655 21 7 7.4996 -0.7470 -6.7309 22 14 9.4309 1.2102 -6.3840 23 1 10.3869 0.1723 -6.8464 24 1 9.4787 2.3732 -7.3062 25 1 9.8007 1.6489 -5.0143 26 6 4.0724 1.5455 -3.9809 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 3.5906 0.5104 1.2950 31 1 3.5540 2.2877 1.2055 32 1 2.6832 1.4879 3.3853 33 1 1.4091 2.3063 2.4494 34 1 1.4457 0.5289 2.5390 35 1 3.5905 0.5105 -1.2952 36 1 3.5539 2.2878 -1.2057 37 1 1.0139 0.9154 -4.9345 38 1 1.6146 2.5774 -5.2149 39 1 3.3626 1.2622 -8.1188 40 1 1.6246 1.1150 -7.7636 41 1 2.4841 2.6285 -7.3909 42 1 5.2181 -0.1529 -6.2105 43 1 8.2468 -1.2973 -7.0137 44 1 4.5536 0.6508 -3.5859 45 1 4.5142 2.4338 -3.5294 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001215376765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:47 Heat of formation + Delta-G solvation = -22.242295 kcal Electronic energy + Delta-G solvation = -22402.966188 eV Core-core repulsion = 19227.479053 eV Total energy + Delta-G solvation = -3175.487135 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.91061 -37.97661 -36.40390 -34.05209 -32.55929 -31.75323 -30.78894 -30.21950 -27.48812 -26.47877 -24.36307 -23.79497 -21.69924 -21.43973 -19.95804 -19.64980 -18.76043 -17.14687 -16.68456 -16.03661 -15.44655 -15.14264 -14.60722 -14.41904 -14.05664 -13.90189 -13.54485 -13.36197 -13.01828 -13.00110 -12.62246 -12.41714 -12.23285 -12.03390 -11.77640 -11.55597 -11.34546 -11.23551 -11.15460 -11.00733 -10.84176 -10.71804 -10.62124 -10.49309 -10.29748 -9.97985 -9.79423 -9.63319 -9.05887 -8.98148 -8.25418 -7.11863 -5.87463 -3.18414 2.51070 2.94707 3.30464 3.37746 3.43033 3.43610 4.48917 4.64131 4.73713 4.84316 5.00103 5.15723 5.19232 5.21094 5.24206 5.34821 5.49411 5.51630 5.54681 5.63447 5.69790 5.78827 5.79224 5.85196 5.85915 5.87308 5.92393 6.00291 6.02137 6.14514 6.19986 6.25093 6.28336 6.38663 6.48665 6.57648 6.64263 6.79722 6.87166 7.00470 7.60007 7.88369 8.29846 8.47784 9.41900 9.95956 10.30959 11.34380 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017068 B = 0.004153 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.090805 B = 6740.796700 C = 7930.199744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.147 4.147 3 C -0.043 4.043 4 H 0.079 0.921 5 C -0.117 4.117 6 C -0.150 4.150 7 C -0.131 4.131 8 C 0.525 3.475 9 O -0.548 6.548 10 N -0.616 5.616 11 C 0.115 3.885 12 C -0.113 4.113 13 H 0.083 0.917 14 C -0.133 4.133 15 C 0.177 3.823 16 H 0.065 0.935 17 N -0.712 5.712 18 C -0.249 4.249 19 H 0.072 0.928 20 C -0.007 4.007 21 N -0.930 5.930 22 Si 0.908 3.092 23 H -0.291 1.291 24 H -0.285 1.285 25 H -0.285 1.285 26 C 0.073 3.927 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.387 0.613 43 H 0.257 0.743 44 H 0.072 0.928 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.833 4.138 11.044 16.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.165 4.165 3 C -0.062 4.062 4 H 0.097 0.903 5 C -0.155 4.155 6 C -0.207 4.207 7 C -0.170 4.170 8 C 0.314 3.686 9 O -0.426 6.426 10 N -0.349 5.349 11 C -0.008 4.008 12 C -0.133 4.133 13 H 0.101 0.899 14 C -0.191 4.191 15 C 0.065 3.935 16 H 0.083 0.917 17 N -0.352 5.352 18 C -0.380 4.380 19 H 0.090 0.910 20 C -0.204 4.204 21 N -0.577 5.577 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.212 1.212 25 H -0.212 1.212 26 C -0.053 4.053 27 H 0.106 0.894 28 H 0.112 0.888 29 H 0.119 0.881 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.221 0.779 43 H 0.067 0.933 44 H 0.091 0.909 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.305 4.199 11.167 16.436 hybrid contribution 1.143 -0.048 -0.162 1.156 sum -10.162 4.151 11.005 15.544 Atomic orbital electron populations 1.23636 0.95891 1.01073 0.99871 1.22652 0.95992 0.97199 1.00698 1.20152 0.96511 0.96891 0.92643 0.90266 1.21549 0.97882 1.02135 0.93923 1.21754 0.99790 1.02011 0.97166 1.21678 0.98575 1.04474 0.92304 1.20311 0.88621 0.76086 0.83599 1.90662 1.14763 1.50916 1.86249 1.48589 1.08769 1.72298 1.05294 1.22211 0.95382 1.00568 0.82673 1.22613 0.95442 1.00963 0.94317 0.89911 1.21609 1.01240 1.00434 0.95823 1.21243 0.87171 0.95672 0.89447 0.91684 1.42353 1.02179 1.12622 1.78046 1.19194 0.84083 0.96450 1.38292 0.91044 1.24758 0.98087 0.95956 1.01593 1.69653 1.30902 1.06783 1.50336 0.86273 0.84315 0.77812 0.77786 1.21653 1.21156 1.21155 1.23299 0.78979 1.01467 1.01560 0.89388 0.88767 0.88119 0.91731 0.91777 0.92993 0.92912 0.92458 0.88848 0.88974 0.91152 0.91903 0.91359 0.93202 0.92873 0.77878 0.93285 0.90922 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 13.22 29.02 0.38 -1.70 16 2 C -0.15 -1.81 6.76 -36.03 -0.24 -2.06 16 3 C -0.04 -0.50 1.82 -91.78 -0.17 -0.67 16 4 H 0.08 1.00 7.60 -51.93 -0.39 0.61 16 5 C -0.12 -1.12 5.39 -26.73 -0.14 -1.27 16 6 C -0.15 -1.31 9.73 37.16 0.36 -0.95 16 7 C -0.13 -1.66 4.36 -27.88 -0.12 -1.78 16 8 C 0.52 8.33 7.60 -10.98 -0.08 8.24 16 9 O -0.55 -9.88 14.42 5.56 0.08 -9.80 16 10 N -0.62 -9.83 3.33 -170.52 -0.57 -10.39 16 11 C 0.11 1.73 6.37 -2.53 -0.02 1.72 16 12 C -0.11 -1.79 3.25 -88.47 -0.29 -2.08 16 13 H 0.08 1.40 8.00 -51.93 -0.42 0.98 16 14 C -0.13 -1.88 9.31 37.16 0.35 -1.53 16 15 C 0.18 3.24 3.06 -66.09 -0.20 3.04 16 16 H 0.07 1.21 8.02 -51.93 -0.42 0.79 16 17 N -0.71 -16.48 5.18 -51.65 -0.27 -16.75 16 18 C -0.25 -6.45 9.98 -15.06 -0.15 -6.60 16 19 H 0.07 1.79 7.83 -52.49 -0.41 1.37 16 20 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 21 N -0.93 -26.79 13.06 55.49 0.72 -26.06 16 22 Si 0.91 21.36 29.55 -169.99 -5.02 16.34 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 C 0.07 1.23 6.24 -3.07 -0.02 1.21 16 27 H 0.09 0.99 8.06 -52.49 -0.42 0.57 16 28 H 0.09 1.21 7.83 -52.49 -0.41 0.80 16 29 H 0.10 1.19 8.06 -52.49 -0.42 0.76 16 30 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.52 7.38 -51.93 -0.38 0.14 16 35 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.08 8.04 -51.93 -0.42 0.66 16 38 H 0.06 0.89 7.99 -51.93 -0.41 0.48 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 42 H 0.39 9.65 7.71 -40.82 -0.31 9.34 16 43 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.07 1.33 8.03 -51.93 -0.42 0.91 16 45 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 363.64 15.07 5.48 5.48 Total: -1.00 -29.03 363.64 -8.21 -37.25 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -8.20 Total: 8.65 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -0.44 Total: -4.71 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: -0.11 Total: -53.21 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.08 Total: -9.80 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.03 -8.21 -37.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215376765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.004 kcal (2) G-P(sol) polarization free energy of solvation -29.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds