Wall clock time and date at job start Tue Mar 31 2020 03:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50694 * 120.00185 * 2 1 4 4 H 1.09000 * 109.47046 * 0.02562 * 3 2 1 5 5 C 1.52995 * 109.47490 * 120.00250 * 3 2 1 6 6 C 1.52999 * 109.47301 * 295.00325 * 5 3 2 7 7 C 1.53003 * 109.47326 * 240.00605 * 3 2 1 8 8 C 1.50701 * 109.47308 * 64.99679 * 7 3 2 9 9 O 1.21279 * 119.99919 * 0.02562 * 8 7 3 10 10 N 1.34777 * 119.99791 * 180.02562 * 8 7 3 11 11 C 1.47428 * 125.64359 * 179.97438 * 10 8 7 12 12 C 1.54905 * 104.83005 * 204.16353 * 11 10 8 13 13 H 1.09004 * 111.00717 * 81.06589 * 12 11 10 14 14 C 1.52998 * 111.00757 * 204.91596 * 12 11 10 15 15 C 1.55162 * 101.58494 * 322.99378 * 12 11 10 16 16 H 1.08995 * 110.86872 * 277.06330 * 15 12 11 17 17 N 1.46499 * 110.72136 * 153.86398 * 15 12 11 18 18 C 1.36931 * 120.00122 * 160.02424 * 17 15 12 19 19 H 1.08002 * 120.00098 * 0.02562 * 18 17 15 20 20 C 1.38812 * 120.00429 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99535 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00187 * 180.27849 * 20 18 17 23 23 H 1.48497 * 109.47173 * 179.72427 * 22 20 18 24 24 H 1.48506 * 109.46866 * 299.71963 * 22 20 18 25 25 H 1.48501 * 109.47438 * 59.72083 * 22 20 18 26 26 C 1.47017 * 125.65077 * 0.02755 * 10 8 7 27 27 H 1.08000 * 120.00050 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00005 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.00005 * 180.02562 * 2 1 3 30 30 H 1.09007 * 109.46895 * 55.00006 * 5 3 2 31 31 H 1.08999 * 109.47643 * 175.00167 * 5 3 2 32 32 H 1.08996 * 109.47752 * 179.97438 * 6 5 3 33 33 H 1.09001 * 109.46909 * 300.00102 * 6 5 3 34 34 H 1.09001 * 109.47244 * 59.99793 * 6 5 3 35 35 H 1.09000 * 109.46763 * 304.99423 * 7 3 2 36 36 H 1.08997 * 109.47217 * 184.99770 * 7 3 2 37 37 H 1.09001 * 110.36863 * 323.00503 * 11 10 8 38 38 H 1.09000 * 110.36244 * 85.21986 * 11 10 8 39 39 H 1.09000 * 109.47369 * 172.19661 * 14 12 11 40 40 H 1.08999 * 109.47009 * 292.20242 * 14 12 11 41 41 H 1.09002 * 109.46507 * 52.19707 * 14 12 11 42 42 H 0.97001 * 119.99790 * 340.01941 * 17 15 12 43 43 H 0.97005 * 119.99717 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.88283 * 59.48847 * 26 10 8 45 45 H 1.09004 * 110.01221 * 298.39274 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3552 2.1335 0.0005 5 6 2.9431 1.3861 1.2491 6 6 2.0566 1.4306 2.4953 7 6 2.9430 1.3862 -1.2493 8 6 2.0696 1.4301 -2.4766 9 8 0.8625 1.4000 -2.3633 10 7 2.6299 1.5028 -3.7002 11 6 1.8978 1.5516 -4.9789 12 6 2.8991 1.0110 -6.0300 13 1 2.9217 -0.0788 -6.0238 14 6 2.5689 1.5423 -7.4262 15 6 4.2396 1.5980 -5.5142 16 1 4.3694 2.6257 -5.8532 17 7 5.3678 0.7668 -5.9413 18 6 6.6338 1.2884 -5.9603 19 1 6.8006 2.3123 -5.6601 20 6 7.7029 0.5010 -6.3655 21 7 7.4996 -0.7470 -6.7309 22 14 9.4309 1.2102 -6.3840 23 1 10.3869 0.1723 -6.8464 24 1 9.4787 2.3732 -7.3062 25 1 9.8007 1.6489 -5.0143 26 6 4.0724 1.5455 -3.9809 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 3.5906 0.5104 1.2950 31 1 3.5540 2.2877 1.2055 32 1 2.6832 1.4879 3.3853 33 1 1.4091 2.3063 2.4494 34 1 1.4457 0.5289 2.5390 35 1 3.5905 0.5105 -1.2952 36 1 3.5539 2.2878 -1.2057 37 1 1.0139 0.9154 -4.9345 38 1 1.6146 2.5774 -5.2149 39 1 3.3626 1.2622 -8.1188 40 1 1.6246 1.1150 -7.7636 41 1 2.4841 2.6285 -7.3909 42 1 5.2181 -0.1529 -6.2105 43 1 8.2468 -1.2973 -7.0137 44 1 4.5536 0.6508 -3.5859 45 1 4.5142 2.4338 -3.5294 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215376765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:46 Heat of formation + Delta-G solvation = -37.876318 kcal Electronic energy + Delta-G solvation = -22403.644130 eV Core-core repulsion = 19227.479053 eV Total energy + Delta-G solvation = -3176.165077 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.18384 -39.24411 -37.46737 -35.80040 -33.96468 -32.61414 -32.52728 -31.23593 -29.07283 -27.60895 -25.90451 -25.09140 -22.91428 -22.51261 -21.37127 -20.64904 -19.97498 -19.05165 -17.96561 -17.35199 -16.66364 -16.51726 -15.92236 -15.54300 -15.35582 -15.19850 -14.88603 -14.52741 -14.47908 -14.11216 -14.02791 -13.60021 -13.41796 -13.00250 -12.98161 -12.84834 -12.82609 -12.77436 -12.26993 -12.22881 -12.08013 -12.05425 -12.01288 -11.68071 -11.66575 -11.40862 -11.35410 -10.98834 -10.80919 -10.02893 -9.56965 -9.03892 -7.92077 -5.21916 1.52280 1.53515 1.53591 1.59605 1.70532 2.06425 2.59127 3.39188 3.43079 3.79364 3.83626 3.85623 3.92388 3.92588 4.23546 4.34500 4.37559 4.39725 4.44232 4.49021 4.53482 4.62101 4.65950 4.69926 4.79496 4.90995 4.93514 4.99437 5.04929 5.07374 5.12430 5.15816 5.18984 5.30709 5.32827 5.39424 5.46311 5.50092 5.57397 5.83318 6.04939 6.28303 6.59559 7.21571 7.36178 8.07885 8.31970 9.30688 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017068 B = 0.004153 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.090805 B = 6740.796700 C = 7930.199744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.153 4.153 3 C -0.039 4.039 4 H 0.068 0.932 5 C -0.114 4.114 6 C -0.149 4.149 7 C -0.127 4.127 8 C 0.520 3.480 9 O -0.570 6.570 10 N -0.618 5.618 11 C 0.118 3.882 12 C -0.104 4.104 13 H 0.068 0.932 14 C -0.128 4.128 15 C 0.170 3.830 16 H 0.069 0.931 17 N -0.722 5.722 18 C -0.241 4.241 19 H 0.081 0.919 20 C -0.069 4.069 21 N -0.968 5.968 22 Si 0.968 3.032 23 H -0.301 1.301 24 H -0.279 1.279 25 H -0.277 1.277 26 C 0.087 3.913 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.047 0.953 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.375 0.625 43 H 0.250 0.750 44 H 0.057 0.943 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.912 5.525 11.957 17.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.171 4.171 3 C -0.058 4.058 4 H 0.086 0.914 5 C -0.151 4.151 6 C -0.206 4.206 7 C -0.166 4.166 8 C 0.310 3.690 9 O -0.450 6.450 10 N -0.351 5.351 11 C -0.005 4.005 12 C -0.124 4.124 13 H 0.087 0.913 14 C -0.185 4.185 15 C 0.060 3.940 16 H 0.087 0.913 17 N -0.361 5.361 18 C -0.373 4.373 19 H 0.099 0.901 20 C -0.261 4.261 21 N -0.618 5.618 22 Si 0.798 3.202 23 H -0.227 1.227 24 H -0.205 1.205 25 H -0.203 1.203 26 C -0.039 4.039 27 H 0.115 0.885 28 H 0.105 0.895 29 H 0.123 0.877 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.115 0.885 36 H 0.127 0.873 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.207 0.793 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.415 5.632 12.102 17.564 hybrid contribution 1.055 -0.452 -0.437 1.228 sum -10.360 5.181 11.665 16.439 Atomic orbital electron populations 1.23699 0.96129 1.01178 1.00238 1.22816 0.96118 0.97777 1.00393 1.20129 0.96408 0.96067 0.93177 0.91397 1.21532 0.97698 1.02818 0.93048 1.21741 0.99808 1.01723 0.97322 1.21735 0.98358 1.05415 0.91140 1.20872 0.88695 0.75244 0.84153 1.90654 1.15902 1.51930 1.86541 1.48646 1.08328 1.72356 1.05814 1.22227 0.94884 1.01350 0.82030 1.22517 0.94170 1.00061 0.95652 0.91341 1.21564 1.01484 1.01412 0.94072 1.21427 0.86885 0.95176 0.90494 0.91326 1.42471 1.02744 1.12509 1.78420 1.19592 0.85103 0.96604 1.36001 0.90100 1.25492 1.01611 0.96396 1.02649 1.69809 1.31322 1.08134 1.52551 0.85295 0.80075 0.76853 0.78019 1.22718 1.20474 1.20256 1.22946 0.79531 1.01351 1.00049 0.88538 0.89515 0.87679 0.91349 0.90759 0.91751 0.92964 0.93015 0.88459 0.87289 0.91245 0.90372 0.93429 0.91116 0.91440 0.79310 0.94103 0.92499 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.25 13.22 67.79 0.90 -3.36 16 2 C -0.15 -3.61 6.76 25.65 0.17 -3.44 16 3 C -0.04 -0.85 1.82 -11.54 -0.02 -0.87 16 4 H 0.07 1.65 7.60 -2.39 -0.02 1.63 16 5 C -0.11 -1.94 5.39 30.59 0.16 -1.77 16 6 C -0.15 -2.35 9.73 71.98 0.70 -1.65 16 7 C -0.13 -3.00 4.36 29.85 0.13 -2.87 16 8 C 0.52 15.75 7.60 87.66 0.67 16.42 16 9 O -0.57 -19.99 14.42 -3.03 -0.04 -20.03 16 10 N -0.62 -18.74 3.33 -811.80 -2.70 -21.44 16 11 C 0.12 3.35 6.37 86.85 0.55 3.91 16 12 C -0.10 -3.17 3.25 -9.40 -0.03 -3.20 16 13 H 0.07 2.30 8.00 -2.38 -0.02 2.28 16 14 C -0.13 -3.39 9.31 71.98 0.67 -2.72 16 15 C 0.17 6.06 3.06 46.18 0.14 6.20 16 16 H 0.07 2.42 8.02 -2.39 -0.02 2.40 16 17 N -0.72 -33.34 5.18 -317.33 -1.64 -34.98 16 18 C -0.24 -12.34 9.98 84.03 0.84 -11.50 16 19 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 20 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 21 N -0.97 -56.68 13.06 21.65 0.28 -56.40 16 22 Si 0.97 43.77 29.55 68.60 2.03 45.80 16 23 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 24 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 25 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 26 C 0.09 2.80 6.24 86.73 0.54 3.34 16 27 H 0.10 2.11 8.06 -2.91 -0.02 2.08 16 28 H 0.09 2.21 7.83 -2.91 -0.02 2.19 16 29 H 0.11 2.36 8.06 -2.91 -0.02 2.34 16 30 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.05 0.87 7.38 -2.39 -0.02 0.85 16 35 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.07 2.02 8.04 -2.39 -0.02 2.00 16 38 H 0.08 2.02 7.99 -2.39 -0.02 2.00 16 39 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.07 1.59 8.08 -2.39 -0.02 1.58 16 42 H 0.37 19.00 7.71 -92.71 -0.72 18.29 16 43 H 0.25 14.38 8.31 -92.70 -0.77 13.61 16 44 H 0.06 2.03 8.03 -2.39 -0.02 2.01 16 45 H 0.07 2.11 8.14 -2.38 -0.02 2.10 16 Total: -1.00 -61.31 363.64 4.03 -57.28 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: 0.22 Total: 34.55 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 5.89 Total: -4.78 kcal Atomic # 7 Polarization: -108.76 SS G_CDS: -4.06 Total: -112.82 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.04 Total: -20.03 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -61.31 4.03 -57.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215376765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.404 kcal (2) G-P(sol) polarization free energy of solvation -61.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds