Wall clock time and date at job start Tue Mar 31 2020 01:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47466 * 2 1 4 4 C 1.53001 * 109.47120 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47268 * 305.00742 * 4 3 2 6 6 C 1.53005 * 109.46657 * 65.00730 * 4 3 2 7 7 C 1.50699 * 109.46954 * 185.00063 * 4 3 2 8 8 O 1.21283 * 120.00021 * 326.86227 * 7 4 3 9 9 N 1.34778 * 119.99781 * 146.85774 * 7 4 3 10 10 C 1.47799 * 135.01187 * 5.47049 * 9 7 4 11 11 C 1.54652 * 85.79368 * 153.82655 * 10 9 7 12 12 H 1.09000 * 114.44208 * 140.42107 * 11 10 9 13 13 C 1.53015 * 110.83450 * 270.23162 * 11 10 9 14 14 C 1.53106 * 109.44811 * 143.88800 * 13 11 10 15 15 N 1.46626 * 108.00519 * 301.02331 * 14 13 11 16 16 C 1.36936 * 119.88685 * 237.30720 * 15 14 13 17 17 H 1.07997 * 120.00315 * 24.30920 * 16 15 14 18 18 C 1.38812 * 119.99328 * 204.58538 * 16 15 14 19 19 N 1.31616 * 120.00674 * 13.58975 * 18 16 15 20 20 Si 1.86806 * 119.99736 * 193.59226 * 18 16 15 21 21 H 1.48499 * 109.47127 * 59.99850 * 20 18 16 22 22 H 1.48490 * 109.47338 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47015 * 299.99775 * 20 18 16 24 24 C 1.45670 * 120.21766 * 57.58350 * 15 14 13 25 25 C 1.46821 * 135.01182 * 185.49425 * 9 7 4 26 26 H 1.09002 * 111.55876 * 94.46392 * 25 9 7 27 27 H 1.09001 * 109.46490 * 299.99254 * 1 2 3 28 28 H 1.08996 * 109.47082 * 59.99698 * 1 2 3 29 29 H 1.09000 * 109.47219 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46382 * 240.00204 * 2 1 3 31 31 H 1.08997 * 109.46928 * 120.01074 * 2 1 3 32 32 H 1.09006 * 109.46488 * 60.00386 * 3 2 1 33 33 H 1.09000 * 109.47063 * 300.00712 * 3 2 1 34 34 H 1.08997 * 109.47018 * 173.86828 * 6 4 3 35 35 H 1.09002 * 109.46847 * 293.86886 * 6 4 3 36 36 H 1.09000 * 109.47266 * 53.86507 * 6 4 3 37 37 H 1.08998 * 113.82653 * 39.60551 * 10 9 7 38 38 H 1.09004 * 113.93340 * 268.05391 * 10 9 7 39 39 H 1.08999 * 109.47892 * 23.89279 * 13 11 10 40 40 H 1.09000 * 109.47413 * 263.87955 * 13 11 10 41 41 H 1.08995 * 109.75443 * 181.39980 * 14 13 11 42 42 H 1.08996 * 109.79877 * 60.67355 * 14 13 11 43 43 H 0.96991 * 120.00210 * 180.02562 * 19 18 16 44 44 H 1.09007 * 108.71928 * 81.48643 * 24 15 14 45 45 H 1.09006 * 108.71588 * 199.50568 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 1 3.9331 0.8529 0.8426 6 6 4.0805 0.8326 -1.3066 7 6 4.0724 2.8577 0.1245 8 8 3.4456 3.7693 -0.3725 9 7 5.2182 3.1105 0.7876 10 6 6.2684 2.2804 1.4141 11 6 7.2108 3.4788 1.1547 12 1 7.9164 3.6804 1.9607 13 6 7.8740 3.3622 -0.2193 14 6 8.0179 4.7563 -0.8359 15 7 6.6790 5.3439 -0.9453 16 6 6.2115 5.7540 -2.1653 17 1 6.6089 5.3186 -3.0701 18 6 5.2307 6.7336 -2.2389 19 7 4.9401 7.4552 -1.1773 20 14 4.3232 7.0277 -3.8451 21 1 3.6198 5.7844 -4.2510 22 1 3.3328 8.1187 -3.6615 23 1 5.2953 7.4132 -4.8994 24 6 5.8469 5.4982 0.2404 25 6 5.9403 4.3247 1.1876 26 1 5.6847 4.6265 2.2033 27 1 -0.3632 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5140 0.8899 32 1 1.6768 1.9562 0.8901 33 1 1.6767 1.9563 -0.8899 34 1 5.1650 0.9312 -1.3543 35 1 3.8095 -0.2224 -1.3455 36 1 3.6306 1.3547 -2.1510 37 1 6.5235 1.3879 0.8426 38 1 6.0980 2.0750 2.4710 39 1 7.2583 2.7396 -0.8684 40 1 8.8596 2.9098 -0.1099 41 1 8.4673 4.6768 -1.8257 42 1 8.6427 5.3800 -0.1966 43 1 4.2545 8.1394 -1.2288 44 1 6.1525 6.4024 0.7670 45 1 4.8092 5.6130 -0.0730 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221457023.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:37 Heat of formation + Delta-G solvation = 8.380845 kcal Electronic energy + Delta-G solvation = -23771.813344 eV Core-core repulsion = 20597.654128 eV Total energy + Delta-G solvation = -3174.159216 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.36444 -38.11499 -35.57881 -35.11546 -32.15616 -31.83332 -30.06706 -28.76476 -26.86052 -26.58569 -23.91328 -23.79383 -22.51842 -21.04905 -20.67748 -19.14456 -17.65587 -16.92501 -15.89542 -15.61093 -15.42737 -15.15136 -14.36970 -13.93865 -13.82276 -13.59520 -13.35541 -13.17335 -12.96953 -12.68508 -12.28499 -12.24213 -12.05690 -11.86563 -11.75476 -11.39933 -11.15818 -11.04947 -10.91402 -10.69904 -10.60906 -10.57902 -10.47046 -10.41693 -10.15204 -9.81419 -9.74437 -9.52839 -8.73247 -8.21428 -7.98311 -6.54884 -5.59642 -3.01197 3.33115 3.38406 3.50617 3.56689 3.59760 4.64935 4.66227 4.79077 4.85711 4.97828 5.16527 5.22430 5.29930 5.41394 5.46580 5.50729 5.57400 5.64635 5.67603 5.71818 5.77580 5.80379 5.85883 5.92593 5.95447 5.98849 6.12859 6.18568 6.20058 6.27565 6.38510 6.39564 6.45022 6.49137 6.59763 6.65373 6.82860 7.04176 7.58108 7.83621 8.01392 8.43952 8.63423 8.92271 9.41460 10.05781 10.53296 11.48450 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014125 B = 0.006968 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.851814 B = 4017.227919 C = 5291.729259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.103 4.103 4 C -0.102 4.102 5 H 0.079 0.921 6 C -0.137 4.137 7 C 0.535 3.465 8 O -0.515 6.515 9 N -0.631 5.631 10 C 0.095 3.905 11 C -0.110 4.110 12 H 0.084 0.916 13 C -0.116 4.116 14 C 0.147 3.853 15 N -0.584 5.584 16 C -0.251 4.251 17 H 0.062 0.938 18 C 0.011 3.989 19 N -0.905 5.905 20 Si 0.902 3.098 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.286 1.286 24 C 0.166 3.834 25 C 0.122 3.878 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.019 0.981 43 H 0.252 0.748 44 H 0.028 0.972 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.072 -15.721 6.739 17.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.141 4.141 4 C -0.124 4.124 5 H 0.097 0.903 6 C -0.195 4.195 7 C 0.323 3.677 8 O -0.389 6.389 9 N -0.368 5.368 10 C -0.029 4.029 11 C -0.129 4.129 12 H 0.102 0.898 13 C -0.156 4.156 14 C 0.021 3.979 15 N -0.307 5.307 16 C -0.381 4.381 17 H 0.080 0.920 18 C -0.187 4.187 19 N -0.550 5.550 20 Si 0.732 3.268 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.212 1.212 24 C 0.040 3.960 25 C 0.018 3.982 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.037 0.963 43 H 0.062 0.938 44 H 0.046 0.954 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.620 -15.100 6.355 16.395 hybrid contribution -0.517 0.053 -0.569 0.771 sum -1.137 -15.047 5.786 16.161 Atomic orbital electron populations 1.21765 0.95942 1.01211 1.02028 1.21567 0.95800 0.96842 1.01834 1.21471 0.92716 0.96479 1.03394 1.21233 0.97094 0.94180 0.99887 0.90306 1.21704 1.01318 1.00178 0.96270 1.20092 0.78872 0.90644 0.78096 1.90778 1.55848 1.46703 1.45596 1.49875 1.21557 1.10153 1.55247 1.23516 0.86168 0.95904 0.97265 1.22855 0.95868 0.95343 0.98863 0.89778 1.21854 0.98440 1.00659 0.94615 1.20736 0.88283 0.90956 0.97972 1.43469 1.10524 1.71609 1.05089 1.19040 1.19531 1.15107 0.84380 0.92047 1.24897 1.00843 0.96034 0.96961 1.69983 1.33735 1.22786 1.28506 0.86376 0.79650 0.77366 0.83363 1.21091 1.21719 1.21227 1.20214 0.99813 0.89766 0.86199 1.22719 0.87112 0.89708 0.98658 0.91284 0.92810 0.92608 0.93001 0.91762 0.92312 0.91962 0.90655 0.92436 0.91999 0.91726 0.90872 0.90768 0.92131 0.92851 0.92663 0.96299 0.93799 0.95394 0.87389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 37.16 0.37 -1.12 16 2 C -0.12 -1.30 5.69 -26.73 -0.15 -1.45 16 3 C -0.10 -1.43 4.23 -26.73 -0.11 -1.54 16 4 C -0.10 -1.51 2.58 -91.77 -0.24 -1.74 16 5 H 0.08 0.98 7.86 -51.93 -0.41 0.57 16 6 C -0.14 -1.88 8.78 37.16 0.33 -1.56 16 7 C 0.53 10.68 7.03 -10.99 -0.08 10.60 16 8 O -0.51 -13.11 15.40 5.55 0.09 -13.03 16 9 N -0.63 -11.63 3.35 -173.83 -0.58 -12.21 16 10 C 0.09 1.28 7.76 -3.01 -0.02 1.26 16 11 C -0.11 -1.71 4.39 -89.97 -0.40 -2.11 16 12 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 13 C -0.12 -1.96 5.66 -26.67 -0.15 -2.11 16 14 C 0.15 3.09 6.47 -3.92 -0.03 3.07 16 15 N -0.58 -15.23 3.02 -174.88 -0.53 -15.75 16 16 C -0.25 -7.31 9.56 -15.06 -0.14 -7.45 16 17 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 18 C 0.01 0.33 4.98 -17.43 -0.09 0.24 16 19 N -0.91 -27.99 10.83 55.49 0.60 -27.39 16 20 Si 0.90 23.74 29.58 -169.99 -5.03 18.71 16 21 H -0.28 -7.58 7.11 56.52 0.40 -7.18 16 22 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 C 0.17 4.23 4.60 -5.45 -0.03 4.21 16 25 C 0.12 2.40 4.24 -69.43 -0.29 2.10 16 26 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.65 6.71 -51.93 -0.35 0.30 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.20 8.02 -51.93 -0.42 0.79 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.67 6.87 -51.93 -0.36 0.31 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 0.87 7.97 -51.93 -0.41 0.46 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.06 1.12 7.69 -51.93 -0.40 0.72 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 1.15 7.88 -51.93 -0.41 0.74 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.25 7.62 8.31 -40.82 -0.34 7.29 16 44 H 0.03 0.77 7.98 -51.93 -0.41 0.35 16 45 H 0.11 3.23 4.76 -51.93 -0.25 2.98 16 LS Contribution 348.94 15.07 5.26 5.26 Total: -1.00 -34.20 348.94 -9.25 -43.45 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -8.03 Total: -1.43 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -1.03 Total: 2.38 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.51 Total: -55.35 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.09 Total: -13.03 kcal Atomic # 14 Polarization: 23.74 SS G_CDS: -5.03 Total: 18.71 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.20 -9.25 -43.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221457023.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.835 kcal (2) G-P(sol) polarization free energy of solvation -34.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds