Wall clock time and date at job start Tue Mar 31 2020 01:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47466 * 2 1 4 4 C 1.53001 * 109.47120 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47268 * 305.00742 * 4 3 2 6 6 C 1.53005 * 109.46657 * 65.00730 * 4 3 2 7 7 C 1.50699 * 109.46954 * 185.00063 * 4 3 2 8 8 O 1.21283 * 120.00021 * 326.86227 * 7 4 3 9 9 N 1.34778 * 119.99781 * 146.85774 * 7 4 3 10 10 C 1.47799 * 135.01187 * 5.47049 * 9 7 4 11 11 C 1.54652 * 85.79368 * 153.82655 * 10 9 7 12 12 H 1.09000 * 114.44208 * 140.42107 * 11 10 9 13 13 C 1.53015 * 110.83450 * 270.23162 * 11 10 9 14 14 C 1.53106 * 109.44811 * 143.88800 * 13 11 10 15 15 N 1.46626 * 108.00519 * 301.02331 * 14 13 11 16 16 C 1.36936 * 119.88685 * 237.30720 * 15 14 13 17 17 H 1.07997 * 120.00315 * 24.30920 * 16 15 14 18 18 C 1.38812 * 119.99328 * 204.58538 * 16 15 14 19 19 N 1.31616 * 120.00674 * 13.58975 * 18 16 15 20 20 Si 1.86806 * 119.99736 * 193.59226 * 18 16 15 21 21 H 1.48499 * 109.47127 * 59.99850 * 20 18 16 22 22 H 1.48490 * 109.47338 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47015 * 299.99775 * 20 18 16 24 24 C 1.45670 * 120.21766 * 57.58350 * 15 14 13 25 25 C 1.46821 * 135.01182 * 185.49425 * 9 7 4 26 26 H 1.09002 * 111.55876 * 94.46392 * 25 9 7 27 27 H 1.09001 * 109.46490 * 299.99254 * 1 2 3 28 28 H 1.08996 * 109.47082 * 59.99698 * 1 2 3 29 29 H 1.09000 * 109.47219 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46382 * 240.00204 * 2 1 3 31 31 H 1.08997 * 109.46928 * 120.01074 * 2 1 3 32 32 H 1.09006 * 109.46488 * 60.00386 * 3 2 1 33 33 H 1.09000 * 109.47063 * 300.00712 * 3 2 1 34 34 H 1.08997 * 109.47018 * 173.86828 * 6 4 3 35 35 H 1.09002 * 109.46847 * 293.86886 * 6 4 3 36 36 H 1.09000 * 109.47266 * 53.86507 * 6 4 3 37 37 H 1.08998 * 113.82653 * 39.60551 * 10 9 7 38 38 H 1.09004 * 113.93340 * 268.05391 * 10 9 7 39 39 H 1.08999 * 109.47892 * 23.89279 * 13 11 10 40 40 H 1.09000 * 109.47413 * 263.87955 * 13 11 10 41 41 H 1.08995 * 109.75443 * 181.39980 * 14 13 11 42 42 H 1.08996 * 109.79877 * 60.67355 * 14 13 11 43 43 H 0.96991 * 120.00210 * 180.02562 * 19 18 16 44 44 H 1.09007 * 108.71928 * 81.48643 * 24 15 14 45 45 H 1.09006 * 108.71588 * 199.50568 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 1 3.9331 0.8529 0.8426 6 6 4.0805 0.8326 -1.3066 7 6 4.0724 2.8577 0.1245 8 8 3.4456 3.7693 -0.3725 9 7 5.2182 3.1105 0.7876 10 6 6.2684 2.2804 1.4141 11 6 7.2108 3.4788 1.1547 12 1 7.9164 3.6804 1.9607 13 6 7.8740 3.3622 -0.2193 14 6 8.0179 4.7563 -0.8359 15 7 6.6790 5.3439 -0.9453 16 6 6.2115 5.7540 -2.1653 17 1 6.6089 5.3186 -3.0701 18 6 5.2307 6.7336 -2.2389 19 7 4.9401 7.4552 -1.1773 20 14 4.3232 7.0277 -3.8451 21 1 3.6198 5.7844 -4.2510 22 1 3.3328 8.1187 -3.6615 23 1 5.2953 7.4132 -4.8994 24 6 5.8469 5.4982 0.2404 25 6 5.9403 4.3247 1.1876 26 1 5.6847 4.6265 2.2033 27 1 -0.3632 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5140 0.8899 32 1 1.6768 1.9562 0.8901 33 1 1.6767 1.9563 -0.8899 34 1 5.1650 0.9312 -1.3543 35 1 3.8095 -0.2224 -1.3455 36 1 3.6306 1.3547 -2.1510 37 1 6.5235 1.3879 0.8426 38 1 6.0980 2.0750 2.4710 39 1 7.2583 2.7396 -0.8684 40 1 8.8596 2.9098 -0.1099 41 1 8.4673 4.6768 -1.8257 42 1 8.6427 5.3800 -0.1966 43 1 4.2545 8.1394 -1.2288 44 1 6.1525 6.4024 0.7670 45 1 4.8092 5.6130 -0.0730 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221457023.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:36 Heat of formation + Delta-G solvation = -13.933779 kcal Electronic energy + Delta-G solvation = -23772.780978 eV Core-core repulsion = 20597.654128 eV Total energy + Delta-G solvation = -3175.126851 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.79894 -39.57219 -37.01907 -36.77190 -33.98932 -32.95669 -31.89696 -30.35185 -28.56232 -27.61510 -25.69315 -25.22039 -23.86549 -22.61647 -21.83541 -20.51585 -19.44303 -18.47611 -17.53410 -17.28311 -16.81096 -16.29509 -16.19627 -15.66432 -15.21614 -14.92146 -14.86751 -14.57973 -14.47362 -14.01512 -13.81694 -13.63088 -13.35762 -13.16858 -13.04918 -12.85869 -12.73805 -12.66065 -12.35593 -12.23828 -12.15513 -12.00262 -11.88496 -11.76044 -11.70312 -11.46981 -11.43622 -11.14398 -10.62676 -10.14739 -9.44509 -8.68506 -7.85159 -5.28305 1.32895 1.41146 1.43867 1.85921 2.03667 2.47402 3.30784 3.48827 3.50427 3.73120 3.77849 3.93344 4.02470 4.19762 4.30849 4.34634 4.37093 4.45925 4.55082 4.59381 4.63858 4.70640 4.74833 4.78066 4.82058 4.86413 4.92342 4.95289 4.99017 5.06393 5.09328 5.16715 5.20113 5.27934 5.33906 5.40271 5.45247 5.48306 5.55242 5.72614 5.86045 6.39898 7.02846 7.19079 7.44160 7.96542 8.35092 9.19007 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014125 B = 0.006968 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.851814 B = 4017.227919 C = 5291.729259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C -0.100 4.100 4 C -0.091 4.091 5 H 0.117 0.883 6 C -0.132 4.132 7 C 0.519 3.481 8 O -0.590 6.590 9 N -0.639 5.639 10 C 0.111 3.889 11 C -0.101 4.101 12 H 0.123 0.877 13 C -0.105 4.105 14 C 0.137 3.863 15 N -0.602 5.602 16 C -0.255 4.255 17 H 0.061 0.939 18 C -0.047 4.047 19 N -0.934 5.934 20 Si 0.956 3.044 21 H -0.293 1.293 22 H -0.294 1.294 23 H -0.265 1.265 24 C 0.180 3.820 25 C 0.105 3.895 26 H 0.084 0.916 27 H 0.050 0.950 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.040 0.960 34 H 0.055 0.945 35 H 0.101 0.899 36 H 0.031 0.969 37 H 0.101 0.899 38 H 0.115 0.885 39 H 0.043 0.957 40 H 0.100 0.900 41 H 0.051 0.949 42 H 0.026 0.974 43 H 0.243 0.757 44 H -0.010 1.010 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.869 -19.847 8.133 21.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.138 4.138 4 C -0.112 4.112 5 H 0.135 0.865 6 C -0.189 4.189 7 C 0.310 3.690 8 O -0.470 6.470 9 N -0.374 5.374 10 C -0.009 4.009 11 C -0.120 4.120 12 H 0.141 0.859 13 C -0.144 4.144 14 C 0.012 3.988 15 N -0.325 5.325 16 C -0.386 4.386 17 H 0.079 0.921 18 C -0.242 4.242 19 N -0.581 5.581 20 Si 0.785 3.215 21 H -0.220 1.220 22 H -0.220 1.220 23 H -0.190 1.190 24 C 0.053 3.947 25 C 0.000 4.000 26 H 0.102 0.898 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.120 0.880 36 H 0.051 0.949 37 H 0.119 0.881 38 H 0.133 0.867 39 H 0.062 0.938 40 H 0.118 0.882 41 H 0.070 0.930 42 H 0.044 0.956 43 H 0.052 0.948 44 H 0.008 0.992 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.253 -19.284 7.771 20.828 hybrid contribution -1.000 1.375 -0.988 1.966 sum 0.253 -17.909 6.783 19.152 Atomic orbital electron populations 1.21785 0.95657 1.02334 1.01363 1.21529 0.96056 0.94135 1.03385 1.21443 0.92592 0.98662 1.01142 1.21268 0.97158 0.90944 1.01797 0.86477 1.21696 1.00857 1.01973 0.94390 1.21183 0.78666 0.92160 0.77026 1.90749 1.58168 1.49309 1.48741 1.50102 1.21690 1.10889 1.54689 1.23782 0.82314 0.95275 0.99573 1.22867 0.94993 0.94841 0.99278 0.85881 1.21732 1.00855 0.97152 0.94632 1.21001 0.85715 0.93426 0.98610 1.43717 1.12782 1.71857 1.04183 1.19363 1.19135 1.14194 0.85859 0.92115 1.25615 1.02177 0.96627 0.99757 1.70170 1.34224 1.23521 1.30225 0.85506 0.78699 0.76519 0.80771 1.22024 1.22050 1.19027 1.19795 0.96704 0.91499 0.86675 1.22665 0.91091 0.88844 0.97393 0.89776 0.93089 0.93834 0.90891 0.90713 0.90007 0.93251 0.94137 0.92557 0.88016 0.94926 0.88122 0.86704 0.93846 0.88160 0.93045 0.95586 0.94790 0.99226 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.91 71.98 0.71 -2.05 16 2 C -0.11 -2.10 5.69 30.59 0.17 -1.93 16 3 C -0.10 -2.77 4.23 30.59 0.13 -2.64 16 4 C -0.09 -2.50 2.58 -11.54 -0.03 -2.53 16 5 H 0.12 2.35 7.86 -2.39 -0.02 2.33 16 6 C -0.13 -3.35 8.78 71.98 0.63 -2.72 16 7 C 0.52 20.92 7.03 87.66 0.62 21.54 16 8 O -0.59 -32.14 15.40 -3.04 -0.05 -32.19 16 9 N -0.64 -22.49 3.35 -822.25 -2.75 -25.25 16 10 C 0.11 2.39 7.76 86.34 0.67 3.06 16 11 C -0.10 -2.71 4.39 -10.31 -0.05 -2.76 16 12 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 13 C -0.10 -3.15 5.66 30.63 0.17 -2.98 16 14 C 0.14 5.65 6.47 86.39 0.56 6.21 16 15 N -0.60 -32.31 3.02 -707.19 -2.14 -34.45 16 16 C -0.26 -15.44 9.56 84.03 0.80 -14.64 16 17 H 0.06 3.59 7.83 -2.91 -0.02 3.57 16 18 C -0.05 -2.93 4.98 84.86 0.42 -2.51 16 19 N -0.93 -61.56 10.83 21.65 0.23 -61.33 16 20 Si 0.96 51.14 29.58 68.60 2.03 53.16 16 21 H -0.29 -15.92 7.11 99.48 0.71 -15.22 16 22 H -0.29 -15.73 7.11 99.48 0.71 -15.03 16 23 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 24 C 0.18 9.61 4.60 85.91 0.40 10.00 16 25 C 0.10 4.04 4.24 43.84 0.19 4.23 16 26 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 1.24 6.71 -2.39 -0.02 1.23 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.04 1.38 8.02 -2.39 -0.02 1.36 16 34 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.10 1.77 6.87 -2.39 -0.02 1.75 16 36 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.10 1.71 7.97 -2.39 -0.02 1.69 16 38 H 0.12 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.04 1.47 7.69 -2.39 -0.02 1.45 16 40 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.05 2.10 7.88 -2.39 -0.02 2.08 16 42 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.24 15.74 8.31 -92.72 -0.77 14.97 16 44 H -0.01 -0.59 7.98 -2.38 -0.02 -0.61 16 45 H 0.06 3.59 4.76 -2.38 -0.01 3.58 16 Total: -1.00 -84.72 348.94 3.67 -81.05 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 0.94 Total: 8.71 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 5.40 Total: 10.28 kcal Atomic # 7 Polarization: -116.37 SS G_CDS: -4.65 Total: -121.02 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -0.05 Total: -32.19 kcal Atomic # 14 Polarization: 51.14 SS G_CDS: 2.03 Total: 53.16 kcal Total: -84.72 3.67 -81.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221457023.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.116 kcal (2) G-P(sol) polarization free energy of solvation -84.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds