Wall clock time and date at job start Tue Mar 31 2020 03:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47315 * 2 1 4 4 H 1.09004 * 109.47176 * 54.99922 * 3 2 1 5 5 C 1.53009 * 109.47326 * 295.00466 * 3 2 1 6 6 C 1.52993 * 109.47358 * 175.00301 * 3 2 1 7 7 C 1.50702 * 109.47309 * 185.00176 * 6 3 2 8 8 O 1.21281 * 120.00178 * 359.97438 * 7 6 3 9 9 N 1.34778 * 119.99880 * 179.97438 * 7 6 3 10 10 C 1.47286 * 136.54575 * 0.02562 * 9 7 6 11 11 C 1.52788 * 87.32367 * 150.71243 * 10 9 7 12 12 H 1.09001 * 114.70638 * 142.41093 * 11 10 9 13 13 C 1.53061 * 111.38640 * 274.42608 * 11 10 9 14 14 C 1.53964 * 108.39823 * 144.15089 * 13 11 10 15 15 N 1.46536 * 107.57899 * 299.98694 * 14 13 11 16 16 C 1.36938 * 119.73427 * 237.77189 * 15 14 13 17 17 H 1.07998 * 120.00232 * 25.17257 * 16 15 14 18 18 C 1.38811 * 119.99688 * 205.17653 * 16 15 14 19 19 N 1.31618 * 120.00721 * 15.80116 * 18 16 15 20 20 Si 1.86805 * 119.99722 * 196.08011 * 18 16 15 21 21 H 1.48503 * 109.47430 * 179.72489 * 20 18 16 22 22 H 1.48506 * 109.46873 * 299.72108 * 20 18 16 23 23 H 1.48495 * 109.47550 * 59.72055 * 20 18 16 24 24 C 1.45697 * 120.53179 * 57.48733 * 15 14 13 25 25 C 1.46470 * 136.53881 * 179.97438 * 9 7 6 26 26 H 1.09002 * 111.43655 * 97.10547 * 25 9 7 27 27 H 1.09005 * 109.47120 * 59.99709 * 1 2 3 28 28 H 1.08996 * 109.47129 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47014 * 300.00010 * 1 2 3 30 30 H 1.09002 * 109.46739 * 240.00355 * 2 1 3 31 31 H 1.08996 * 109.47124 * 120.00440 * 2 1 3 32 32 H 1.09004 * 109.46549 * 299.99840 * 5 3 2 33 33 H 1.08996 * 109.47184 * 59.99386 * 5 3 2 34 34 H 1.08994 * 109.47196 * 180.02562 * 5 3 2 35 35 H 1.08997 * 109.47486 * 65.00059 * 6 3 2 36 36 H 1.09007 * 109.46952 * 304.99954 * 6 3 2 37 37 H 1.08996 * 113.52733 * 266.06611 * 10 9 7 38 38 H 1.08997 * 113.53029 * 36.69504 * 10 9 7 39 39 H 1.08997 * 109.51844 * 262.81926 * 13 11 10 40 40 H 1.08993 * 109.51835 * 22.92974 * 13 11 10 41 41 H 1.08995 * 108.93631 * 181.12678 * 14 13 11 42 42 H 1.09005 * 111.13975 * 60.09590 * 14 13 11 43 43 H 0.96996 * 120.00182 * 180.02562 * 19 18 16 44 44 H 1.09004 * 108.79044 * 81.16310 * 24 15 14 45 45 H 1.08995 * 108.79311 * 199.49614 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5648 1.4443 0.1256 7 6 4.0570 2.8633 0.2492 8 8 3.2662 3.7827 0.2374 9 7 5.3761 3.1106 0.3728 10 6 6.6130 2.3128 0.4281 11 6 7.3289 3.5114 -0.1926 12 1 8.3345 3.6890 0.1887 13 6 7.2244 3.4944 -1.7196 14 6 7.0956 4.9468 -2.2140 15 7 5.8848 5.5131 -1.6133 16 6 4.8951 6.0092 -2.4192 17 1 4.7885 5.6449 -3.4303 18 6 4.0288 6.9805 -1.9365 19 7 4.3309 7.6469 -0.8424 20 14 2.4304 7.3364 -2.8354 21 1 1.6863 8.4033 -2.1188 22 1 2.7299 7.7856 -4.2188 23 1 1.6042 6.1034 -2.8833 24 6 5.7229 5.5468 -0.1658 25 6 6.2274 4.2944 0.5119 26 1 6.4775 4.4848 1.5556 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.0699 1.5875 -2.1492 33 1 0.5490 2.1253 -1.3969 34 1 1.9990 3.1541 -1.3075 35 1 4.0030 0.9836 -0.7597 36 1 3.8571 0.8799 1.0113 37 1 6.9332 2.0763 1.4428 38 1 6.5975 1.4401 -0.2247 39 1 8.1292 3.0571 -2.1417 40 1 6.3598 2.9021 -2.0189 41 1 7.0003 4.9437 -3.2998 42 1 7.9624 5.5398 -1.9221 43 1 3.7253 8.3254 -0.5050 44 1 6.2688 6.4038 0.2287 45 1 4.6649 5.6680 0.0664 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221511098.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:45 Heat of formation + Delta-G solvation = 15.824912 kcal Electronic energy + Delta-G solvation = -23865.782069 eV Core-core repulsion = 20691.945652 eV Total energy + Delta-G solvation = -3173.836417 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.54453 -38.24049 -35.85970 -35.14337 -32.05972 -30.76096 -30.09558 -29.06723 -27.14710 -26.60680 -24.00795 -23.75867 -22.61090 -20.98574 -20.08030 -19.33507 -17.68419 -16.81137 -15.81995 -15.79636 -15.39144 -14.88185 -14.41986 -14.26001 -13.78873 -13.60385 -13.39492 -13.17079 -12.74124 -12.67980 -12.41121 -12.18396 -11.85548 -11.75247 -11.58943 -11.38553 -11.18543 -11.00923 -10.64705 -10.59734 -10.57521 -10.45345 -10.42080 -10.39217 -10.17508 -9.81926 -9.73260 -9.46897 -8.76929 -8.23682 -7.99941 -6.54050 -5.61254 -3.02442 3.33887 3.39320 3.50421 3.56558 3.60421 4.64930 4.75212 4.77067 4.94667 4.99602 5.19137 5.23242 5.38942 5.48054 5.55180 5.57142 5.58508 5.66101 5.67820 5.78390 5.80900 5.86256 5.90918 5.95715 6.04601 6.14065 6.16289 6.19842 6.24116 6.33839 6.41929 6.44241 6.56929 6.60354 6.64674 6.82244 6.93013 7.04067 7.54776 7.81373 7.98515 8.45923 8.62183 8.91414 9.40440 10.05176 10.52850 11.47104 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013069 B = 0.007768 C = 0.005472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.975532 B = 3603.838473 C = 5116.163144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.075 4.075 4 H 0.075 0.925 5 C -0.155 4.155 6 C -0.128 4.128 7 C 0.537 3.463 8 O -0.513 6.513 9 N -0.636 5.636 10 C 0.095 3.905 11 C -0.115 4.115 12 H 0.088 0.912 13 C -0.113 4.113 14 C 0.148 3.852 15 N -0.584 5.584 16 C -0.253 4.253 17 H 0.060 0.940 18 C 0.013 3.987 19 N -0.903 5.903 20 Si 0.899 3.101 21 H -0.292 1.292 22 H -0.286 1.286 23 H -0.283 1.283 24 C 0.169 3.831 25 C 0.117 3.883 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.023 0.977 43 H 0.252 0.748 44 H 0.028 0.972 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.546 -15.740 3.476 16.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.093 4.093 4 H 0.094 0.906 5 C -0.212 4.212 6 C -0.168 4.168 7 C 0.326 3.674 8 O -0.388 6.388 9 N -0.373 5.373 10 C -0.028 4.028 11 C -0.134 4.134 12 H 0.106 0.894 13 C -0.152 4.152 14 C 0.021 3.979 15 N -0.307 5.307 16 C -0.382 4.382 17 H 0.078 0.922 18 C -0.186 4.186 19 N -0.548 5.548 20 Si 0.729 3.271 21 H -0.218 1.218 22 H -0.213 1.213 23 H -0.209 1.209 24 C 0.043 3.957 25 C 0.013 3.987 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.041 0.959 43 H 0.062 0.938 44 H 0.046 0.954 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.738 -15.132 3.537 15.636 hybrid contribution -0.754 0.016 -0.230 0.789 sum 0.984 -15.116 3.306 15.505 Atomic orbital electron populations 1.21804 0.95923 1.01046 1.02215 1.21583 0.96017 0.96491 1.01473 1.20902 0.92935 0.95414 1.00089 0.90610 1.22000 1.00603 1.03159 0.95422 1.21667 0.97340 0.94671 1.03088 1.19992 0.79740 0.91029 0.76633 1.90744 1.52875 1.46310 1.48848 1.49617 1.03724 1.11005 1.72940 1.23062 0.83701 0.96155 0.99913 1.22559 0.97714 0.95906 0.97198 0.89388 1.21976 1.00237 1.00480 0.92506 1.20899 0.89962 0.90464 0.96600 1.43444 1.15738 1.70172 1.01314 1.19015 1.07421 1.15427 0.96338 0.92181 1.24889 0.99717 0.96068 0.97889 1.70004 1.36102 1.24615 1.24062 0.86426 0.84503 0.77530 0.78618 1.21772 1.21277 1.20906 1.20142 1.03189 0.89315 0.83102 1.22654 0.86823 0.90752 0.98462 0.91208 0.92306 0.93177 0.92797 0.92165 0.92389 0.93693 0.93179 0.89783 0.89753 0.90056 0.90671 0.91336 0.92963 0.91968 0.92858 0.95887 0.93811 0.95441 0.88064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.67 37.16 0.36 -1.25 16 2 C -0.12 -1.32 5.40 -26.73 -0.14 -1.46 16 3 C -0.07 -1.08 2.04 -90.62 -0.18 -1.26 16 4 H 0.08 1.21 7.96 -51.93 -0.41 0.80 16 5 C -0.15 -2.58 8.69 37.16 0.32 -2.25 16 6 C -0.13 -1.84 5.03 -27.89 -0.14 -1.98 16 7 C 0.54 10.48 7.73 -10.98 -0.08 10.39 16 8 O -0.51 -12.54 13.21 5.56 0.07 -12.47 16 9 N -0.64 -11.51 3.27 -191.22 -0.63 -12.13 16 10 C 0.10 1.26 7.76 -12.20 -0.09 1.17 16 11 C -0.11 -1.76 4.47 -91.01 -0.41 -2.16 16 12 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 13 C -0.11 -1.88 5.72 -26.20 -0.15 -2.03 16 14 C 0.15 3.07 6.49 -3.52 -0.02 3.05 16 15 N -0.58 -15.05 3.00 -174.42 -0.52 -15.57 16 16 C -0.25 -7.28 9.52 -15.06 -0.14 -7.43 16 17 H 0.06 1.72 7.84 -52.49 -0.41 1.30 16 18 C 0.01 0.39 4.91 -17.43 -0.09 0.30 16 19 N -0.90 -27.75 11.04 55.49 0.61 -27.13 16 20 Si 0.90 23.59 29.58 -169.99 -5.03 18.56 16 21 H -0.29 -7.69 7.11 56.52 0.40 -7.28 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.28 -7.49 7.11 56.52 0.40 -7.09 16 24 C 0.17 4.24 4.60 -5.45 -0.03 4.21 16 25 C 0.12 2.26 4.09 -77.70 -0.32 1.94 16 26 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 27 H 0.06 0.65 6.57 -51.93 -0.34 0.31 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.76 6.56 -51.93 -0.34 0.42 16 34 H 0.08 1.80 5.95 -51.93 -0.31 1.49 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.80 8.01 -51.93 -0.42 0.38 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 1.14 7.64 -51.93 -0.40 0.74 16 41 H 0.05 1.10 7.87 -51.93 -0.41 0.69 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.03 0.75 7.99 -51.93 -0.42 0.33 16 45 H 0.10 2.99 5.01 -51.93 -0.26 2.73 16 LS Contribution 344.95 15.07 5.20 5.20 Total: -1.00 -33.45 344.95 -9.33 -42.78 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -7.92 Total: -0.47 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -1.12 Total: 1.24 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.54 Total: -54.84 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.07 Total: -12.47 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -5.03 Total: 18.56 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.45 -9.33 -42.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221511098.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.603 kcal (2) G-P(sol) polarization free energy of solvation -33.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds