Wall clock time and date at job start Tue Mar 31 2020 03:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47315 * 2 1 4 4 H 1.09004 * 109.47176 * 54.99922 * 3 2 1 5 5 C 1.53009 * 109.47326 * 295.00466 * 3 2 1 6 6 C 1.52993 * 109.47358 * 175.00301 * 3 2 1 7 7 C 1.50702 * 109.47309 * 185.00176 * 6 3 2 8 8 O 1.21281 * 120.00178 * 359.97438 * 7 6 3 9 9 N 1.34778 * 119.99880 * 179.97438 * 7 6 3 10 10 C 1.47286 * 136.54575 * 0.02562 * 9 7 6 11 11 C 1.52788 * 87.32367 * 150.71243 * 10 9 7 12 12 H 1.09001 * 114.70638 * 142.41093 * 11 10 9 13 13 C 1.53061 * 111.38640 * 274.42608 * 11 10 9 14 14 C 1.53964 * 108.39823 * 144.15089 * 13 11 10 15 15 N 1.46536 * 107.57899 * 299.98694 * 14 13 11 16 16 C 1.36938 * 119.73427 * 237.77189 * 15 14 13 17 17 H 1.07998 * 120.00232 * 25.17257 * 16 15 14 18 18 C 1.38811 * 119.99688 * 205.17653 * 16 15 14 19 19 N 1.31618 * 120.00721 * 15.80116 * 18 16 15 20 20 Si 1.86805 * 119.99722 * 196.08011 * 18 16 15 21 21 H 1.48503 * 109.47430 * 179.72489 * 20 18 16 22 22 H 1.48506 * 109.46873 * 299.72108 * 20 18 16 23 23 H 1.48495 * 109.47550 * 59.72055 * 20 18 16 24 24 C 1.45697 * 120.53179 * 57.48733 * 15 14 13 25 25 C 1.46470 * 136.53881 * 179.97438 * 9 7 6 26 26 H 1.09002 * 111.43655 * 97.10547 * 25 9 7 27 27 H 1.09005 * 109.47120 * 59.99709 * 1 2 3 28 28 H 1.08996 * 109.47129 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47014 * 300.00010 * 1 2 3 30 30 H 1.09002 * 109.46739 * 240.00355 * 2 1 3 31 31 H 1.08996 * 109.47124 * 120.00440 * 2 1 3 32 32 H 1.09004 * 109.46549 * 299.99840 * 5 3 2 33 33 H 1.08996 * 109.47184 * 59.99386 * 5 3 2 34 34 H 1.08994 * 109.47196 * 180.02562 * 5 3 2 35 35 H 1.08997 * 109.47486 * 65.00059 * 6 3 2 36 36 H 1.09007 * 109.46952 * 304.99954 * 6 3 2 37 37 H 1.08996 * 113.52733 * 266.06611 * 10 9 7 38 38 H 1.08997 * 113.53029 * 36.69504 * 10 9 7 39 39 H 1.08997 * 109.51844 * 262.81926 * 13 11 10 40 40 H 1.08993 * 109.51835 * 22.92974 * 13 11 10 41 41 H 1.08995 * 108.93631 * 181.12678 * 14 13 11 42 42 H 1.09005 * 111.13975 * 60.09590 * 14 13 11 43 43 H 0.96996 * 120.00182 * 180.02562 * 19 18 16 44 44 H 1.09004 * 108.79044 * 81.16310 * 24 15 14 45 45 H 1.08995 * 108.79311 * 199.49614 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5648 1.4443 0.1256 7 6 4.0570 2.8633 0.2492 8 8 3.2662 3.7827 0.2374 9 7 5.3761 3.1106 0.3728 10 6 6.6130 2.3128 0.4281 11 6 7.3289 3.5114 -0.1926 12 1 8.3345 3.6890 0.1887 13 6 7.2244 3.4944 -1.7196 14 6 7.0956 4.9468 -2.2140 15 7 5.8848 5.5131 -1.6133 16 6 4.8951 6.0092 -2.4192 17 1 4.7885 5.6449 -3.4303 18 6 4.0288 6.9805 -1.9365 19 7 4.3309 7.6469 -0.8424 20 14 2.4304 7.3364 -2.8354 21 1 1.6863 8.4033 -2.1188 22 1 2.7299 7.7856 -4.2188 23 1 1.6042 6.1034 -2.8833 24 6 5.7229 5.5468 -0.1658 25 6 6.2274 4.2944 0.5119 26 1 6.4775 4.4848 1.5556 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.0699 1.5875 -2.1492 33 1 0.5490 2.1253 -1.3969 34 1 1.9990 3.1541 -1.3075 35 1 4.0030 0.9836 -0.7597 36 1 3.8571 0.8799 1.0113 37 1 6.9332 2.0763 1.4428 38 1 6.5975 1.4401 -0.2247 39 1 8.1292 3.0571 -2.1417 40 1 6.3598 2.9021 -2.0189 41 1 7.0003 4.9437 -3.2998 42 1 7.9624 5.5398 -1.9221 43 1 3.7253 8.3254 -0.5050 44 1 6.2688 6.4038 0.2287 45 1 4.6649 5.6680 0.0664 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221511098.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:45 Heat of formation + Delta-G solvation = -5.804291 kcal Electronic energy + Delta-G solvation = -23866.719981 eV Core-core repulsion = 20691.945652 eV Total energy + Delta-G solvation = -3174.774330 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.93905 -39.64689 -37.16982 -36.93430 -33.94276 -32.00367 -31.81349 -30.47710 -28.78942 -28.00742 -25.64953 -25.13642 -24.03817 -22.55910 -21.34990 -20.59552 -19.45556 -18.38827 -17.40321 -17.32465 -16.94786 -16.20622 -16.00357 -15.70966 -15.45162 -15.08721 -14.82186 -14.57400 -14.30885 -14.08511 -13.86031 -13.61166 -13.31726 -13.14572 -12.82293 -12.78980 -12.73947 -12.65669 -12.29467 -12.23222 -12.17931 -11.99162 -11.78579 -11.67694 -11.56526 -11.46397 -11.41099 -11.03870 -10.61437 -10.18868 -9.41503 -8.66681 -7.85934 -5.28498 1.32258 1.40612 1.43767 1.92485 2.08559 2.47341 3.30090 3.50133 3.61407 3.73718 3.84013 3.94190 4.01789 4.16361 4.31484 4.43853 4.50167 4.54790 4.57049 4.61450 4.67966 4.69418 4.70048 4.78189 4.82705 4.87993 4.91601 4.96688 5.06781 5.10204 5.12453 5.17279 5.22249 5.32625 5.35920 5.45619 5.49846 5.55887 5.58862 5.72478 5.82620 6.39215 7.09530 7.19605 7.49081 7.97121 8.35480 9.18402 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013069 B = 0.007768 C = 0.005472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.975532 B = 3603.838473 C = 5116.163144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.108 4.108 3 C -0.072 4.072 4 H 0.051 0.949 5 C -0.150 4.150 6 C -0.114 4.114 7 C 0.520 3.480 8 O -0.580 6.580 9 N -0.644 5.644 10 C 0.112 3.888 11 C -0.104 4.104 12 H 0.126 0.874 13 C -0.101 4.101 14 C 0.138 3.862 15 N -0.601 5.601 16 C -0.254 4.254 17 H 0.058 0.942 18 C -0.043 4.043 19 N -0.933 5.933 20 Si 0.951 3.049 21 H -0.295 1.295 22 H -0.267 1.267 23 H -0.292 1.292 24 C 0.183 3.817 25 C 0.101 3.899 26 H 0.086 0.914 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.027 0.973 35 H 0.103 0.897 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.045 0.955 41 H 0.048 0.952 42 H 0.030 0.970 43 H 0.243 0.757 44 H -0.010 1.010 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.502 -19.952 3.503 20.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.145 4.145 3 C -0.091 4.091 4 H 0.069 0.931 5 C -0.207 4.207 6 C -0.154 4.154 7 C 0.311 3.689 8 O -0.460 6.460 9 N -0.380 5.380 10 C -0.009 4.009 11 C -0.123 4.123 12 H 0.144 0.856 13 C -0.140 4.140 14 C 0.013 3.987 15 N -0.324 5.324 16 C -0.384 4.384 17 H 0.076 0.924 18 C -0.238 4.238 19 N -0.579 5.579 20 Si 0.780 3.220 21 H -0.221 1.221 22 H -0.192 1.192 23 H -0.219 1.219 24 C 0.056 3.944 25 C -0.004 4.004 26 H 0.104 0.896 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.047 0.953 35 H 0.122 0.878 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.048 0.952 43 H 0.052 0.948 44 H 0.007 0.993 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.764 -19.397 3.543 20.074 hybrid contribution -1.305 1.374 -0.276 1.915 sum 2.459 -18.023 3.267 18.481 Atomic orbital electron populations 1.21825 0.95799 1.02165 1.01430 1.21520 0.96098 0.93749 1.03168 1.20880 0.93401 0.97312 0.97524 0.93071 1.21911 1.00945 1.00240 0.97600 1.21673 0.96814 0.91395 1.05478 1.21042 0.79822 0.92520 0.75491 1.90732 1.54818 1.48691 1.51750 1.49835 1.04598 1.11649 1.71936 1.23266 0.79655 0.95566 1.02453 1.22583 0.98272 0.95573 0.95887 0.85643 1.21833 1.01670 0.96714 0.93775 1.21166 0.87972 0.93247 0.96358 1.43688 1.16946 1.70342 1.01456 1.19307 1.08115 1.14466 0.96550 0.92427 1.25558 1.02473 0.96775 0.98987 1.70170 1.36692 1.25439 1.25649 0.85580 0.81202 0.76644 0.78544 1.22119 1.19228 1.21922 1.19736 0.99746 0.91593 0.83291 1.22654 0.89306 0.89153 0.99269 0.89643 0.93382 0.91037 0.93434 0.90786 0.90203 0.92474 0.92582 0.95339 0.87829 0.86472 0.86918 0.88409 0.88397 0.93613 0.93372 0.95204 0.94768 0.99254 0.93345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.67 71.98 0.70 -2.26 16 2 C -0.11 -2.07 5.40 30.59 0.17 -1.90 16 3 C -0.07 -2.02 2.04 -10.79 -0.02 -2.05 16 4 H 0.05 1.68 7.96 -2.38 -0.02 1.66 16 5 C -0.15 -5.12 8.69 71.99 0.63 -4.49 16 6 C -0.11 -3.01 5.03 29.85 0.15 -2.86 16 7 C 0.52 20.28 7.73 87.66 0.68 20.95 16 8 O -0.58 -30.25 13.21 -3.03 -0.04 -30.29 16 9 N -0.64 -22.18 3.27 -877.29 -2.87 -25.05 16 10 C 0.11 2.35 7.76 80.66 0.63 2.97 16 11 C -0.10 -2.75 4.47 -11.03 -0.05 -2.80 16 12 H 0.13 2.48 8.14 -2.39 -0.02 2.47 16 13 C -0.10 -3.01 5.72 30.94 0.18 -2.84 16 14 C 0.14 5.62 6.49 86.70 0.56 6.18 16 15 N -0.60 -31.92 3.00 -705.73 -2.12 -34.04 16 16 C -0.25 -15.27 9.52 84.03 0.80 -14.47 16 17 H 0.06 3.41 7.84 -2.91 -0.02 3.39 16 18 C -0.04 -2.66 4.91 84.86 0.42 -2.24 16 19 N -0.93 -61.08 11.04 21.65 0.24 -60.84 16 20 Si 0.95 51.05 29.58 68.60 2.03 53.08 16 21 H -0.29 -15.83 7.11 99.48 0.71 -15.13 16 22 H -0.27 -13.33 7.11 99.48 0.71 -12.63 16 23 H -0.29 -15.95 7.11 99.48 0.71 -15.25 16 24 C 0.18 9.63 4.60 85.90 0.39 10.03 16 25 C 0.10 3.81 4.09 38.68 0.16 3.97 16 26 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 27 H 0.05 1.00 6.57 -2.38 -0.02 0.99 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.06 1.77 6.56 -2.39 -0.02 1.75 16 34 H 0.03 1.29 5.95 -2.39 -0.01 1.27 16 35 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.12 2.27 8.14 -2.38 -0.02 2.25 16 37 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.10 1.59 8.01 -2.39 -0.02 1.57 16 39 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.05 1.53 7.64 -2.39 -0.02 1.51 16 41 H 0.05 1.97 7.87 -2.39 -0.02 1.95 16 42 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 43 H 0.24 15.66 8.31 -92.71 -0.77 14.89 16 44 H -0.01 -0.60 7.99 -2.38 -0.02 -0.62 16 45 H 0.05 3.07 5.01 -2.39 -0.01 3.06 16 Total: -1.00 -83.08 344.95 3.56 -79.52 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 0.94 Total: 9.43 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 5.38 Total: 8.20 kcal Atomic # 7 Polarization: -115.19 SS G_CDS: -4.75 Total: -119.94 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.04 Total: -30.29 kcal Atomic # 14 Polarization: 51.05 SS G_CDS: 2.03 Total: 53.08 kcal Total: -83.08 3.56 -79.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221511098.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.715 kcal (2) G-P(sol) polarization free energy of solvation -83.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds