Wall clock time and date at job start Tue Mar 31 2020 03:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 120.00137 * 2 1 4 4 H 1.09004 * 109.46990 * 359.97438 * 3 2 1 5 5 C 1.53002 * 109.46879 * 239.99926 * 3 2 1 6 6 C 1.53001 * 109.47112 * 65.00054 * 5 3 2 7 7 C 1.52994 * 109.47383 * 120.00149 * 3 2 1 8 8 C 1.50696 * 109.47059 * 295.00035 * 7 3 2 9 9 O 1.21280 * 120.00124 * 359.97438 * 8 7 3 10 10 N 1.34783 * 120.00188 * 180.02562 * 8 7 3 11 11 C 1.46503 * 119.99973 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46758 * 179.97438 * 11 10 8 13 13 H 1.09003 * 112.84868 * 316.19372 * 12 11 10 14 14 C 1.53780 * 113.61485 * 87.50468 * 12 11 10 15 15 C 1.53778 * 87.08092 * 139.97987 * 14 12 11 16 16 H 1.08998 * 113.68905 * 220.01231 * 15 14 12 17 17 N 1.46499 * 113.61557 * 89.11527 * 15 14 12 18 18 C 1.36939 * 119.99933 * 107.77738 * 17 15 14 19 19 H 1.08001 * 119.99700 * 359.72658 * 18 17 15 20 20 C 1.38810 * 120.00095 * 179.71972 * 18 17 15 21 21 N 1.31624 * 119.99740 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00044 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47173 * 60.00435 * 22 20 18 24 24 H 1.48497 * 109.47172 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47132 * 300.00314 * 22 20 18 26 26 C 1.53783 * 113.61069 * 185.00291 * 12 11 10 27 27 H 1.08001 * 120.00377 * 180.02562 * 1 2 3 28 28 H 1.07997 * 120.00148 * 359.97438 * 1 2 3 29 29 H 1.07998 * 119.99776 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47214 * 184.99770 * 5 3 2 31 31 H 1.08997 * 109.47552 * 304.99698 * 5 3 2 32 32 H 1.08997 * 109.47202 * 59.99431 * 6 5 3 33 33 H 1.08996 * 109.47153 * 179.97438 * 6 5 3 34 34 H 1.09004 * 109.47290 * 300.00017 * 6 5 3 35 35 H 1.09003 * 109.47346 * 174.99831 * 7 3 2 36 36 H 1.09004 * 109.47481 * 54.99684 * 7 3 2 37 37 H 0.96995 * 119.99654 * 359.97438 * 10 8 7 38 38 H 1.09003 * 109.47210 * 59.99561 * 11 10 8 39 39 H 1.08991 * 109.46962 * 299.99561 * 11 10 8 40 40 H 1.08998 * 113.61038 * 25.43021 * 14 12 11 41 41 H 1.08998 * 113.61309 * 254.52603 * 14 12 11 42 42 H 0.97001 * 119.99790 * 287.49711 * 17 15 14 43 43 H 0.96998 * 119.99409 * 179.97438 * 21 20 18 44 44 H 1.09000 * 113.61551 * 105.47086 * 26 12 11 45 45 H 1.09004 * 113.69000 * 334.57222 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9431 1.3860 -1.2493 6 6 2.0564 1.4306 -2.4953 7 6 2.9432 1.3861 1.2492 8 6 2.0698 1.4300 2.4765 9 8 0.8627 1.4000 2.3632 10 7 2.6302 1.5038 3.7001 11 6 1.7812 1.5470 4.8932 12 6 2.6609 1.6280 6.1424 13 1 3.5112 0.9469 6.1062 14 6 3.0369 3.0654 6.5390 15 6 2.8222 2.6348 7.9996 16 1 2.3259 3.3892 8.6100 17 7 4.0254 2.0909 8.6340 18 6 4.6878 2.8209 9.5847 19 1 4.3255 3.7994 9.8634 20 6 5.8245 2.3031 10.1900 21 7 6.2661 1.1107 9.8499 22 14 6.7284 3.2992 11.4862 23 1 5.8136 3.5799 12.6218 24 1 7.9011 2.5293 11.9734 25 1 7.1894 4.5804 10.8936 26 6 1.8693 1.5556 7.4589 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8499 -0.9353 0.0004 30 1 3.5540 2.2877 -1.2057 31 1 3.5906 0.5104 -1.2952 32 1 1.4090 2.3062 -2.4494 33 1 2.6830 1.4887 -3.3853 34 1 1.4454 0.5289 -2.5390 35 1 3.5541 2.2878 1.2055 36 1 3.5906 0.5104 1.2951 37 1 3.5956 1.5282 3.7906 38 1 1.1702 0.6454 4.9372 39 1 1.1339 2.4227 4.8469 40 1 2.3232 3.8140 6.1950 41 1 4.0697 3.3260 6.3080 42 1 4.3506 1.2120 8.3836 43 1 7.0607 0.7491 10.2727 44 1 1.9597 0.5974 7.9706 45 1 0.8362 1.8911 7.3678 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263870247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:30 Heat of formation + Delta-G solvation = -8.814841 kcal Electronic energy + Delta-G solvation = -21439.639107 eV Core-core repulsion = 18264.734230 eV Total energy + Delta-G solvation = -3174.904877 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.92814 -38.60900 -36.87866 -34.54086 -33.20089 -31.91116 -30.86814 -29.98345 -27.35529 -25.06985 -24.72272 -23.57430 -21.88834 -21.62019 -20.47205 -19.66087 -18.37994 -17.39450 -16.81050 -16.01801 -15.74457 -15.08013 -14.85553 -14.75810 -14.30149 -14.01370 -13.97556 -13.59779 -13.38355 -12.99224 -12.87955 -12.37737 -12.30396 -12.01685 -11.91700 -11.54005 -11.43016 -11.33974 -11.04757 -11.02409 -10.84144 -10.67065 -10.48688 -10.22156 -10.09386 -9.76140 -9.70380 -9.49918 -9.17599 -8.91994 -8.86819 -7.01983 -5.82521 -3.11587 2.35128 2.73606 3.27302 3.41102 3.45618 3.46519 4.53999 4.54215 4.57609 4.68543 4.99647 5.03226 5.07391 5.11029 5.17916 5.23558 5.28132 5.32076 5.43862 5.51074 5.62503 5.64941 5.67972 5.72033 5.72930 5.86685 5.87842 5.98260 5.99331 6.09850 6.11734 6.21155 6.36818 6.48036 6.59986 6.64561 6.73769 6.84460 6.90453 7.03544 7.59739 7.66763 8.31511 8.36812 9.47302 10.04930 10.39199 11.39889 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.033086 B = 0.002595 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.063519 B =10787.416481 C =11219.955897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.151 4.151 3 C -0.044 4.044 4 H 0.080 0.920 5 C -0.117 4.117 6 C -0.151 4.151 7 C -0.137 4.137 8 C 0.508 3.492 9 O -0.539 6.539 10 N -0.728 5.728 11 C 0.132 3.868 12 C -0.119 4.119 13 H 0.092 0.908 14 C -0.168 4.168 15 C 0.167 3.833 16 H 0.062 0.938 17 N -0.706 5.706 18 C -0.243 4.243 19 H 0.072 0.928 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.909 3.091 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.149 4.149 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.401 0.599 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.067 0.933 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.662 -0.566 -21.152 22.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C -0.062 4.062 4 H 0.099 0.901 5 C -0.154 4.154 6 C -0.208 4.208 7 C -0.177 4.177 8 C 0.294 3.706 9 O -0.416 6.416 10 N -0.379 5.379 11 C 0.009 3.991 12 C -0.138 4.138 13 H 0.110 0.890 14 C -0.209 4.209 15 C 0.055 3.945 16 H 0.080 0.920 17 N -0.344 5.344 18 C -0.374 4.374 19 H 0.090 0.910 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.740 3.260 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.188 4.188 27 H 0.107 0.893 28 H 0.113 0.887 29 H 0.119 0.881 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.235 0.765 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.448 -0.476 -21.060 22.696 hybrid contribution 1.200 0.120 0.738 1.414 sum -7.249 -0.356 -20.321 21.578 Atomic orbital electron populations 1.23680 0.95933 1.01236 0.99284 1.22628 0.95991 0.97079 1.01244 1.20145 0.96545 0.97041 0.92509 0.90135 1.21549 0.97873 1.02007 0.94014 1.21758 0.99824 1.02115 0.97132 1.21730 0.98747 1.04359 0.92817 1.20654 0.89195 0.76099 0.84679 1.90692 1.14821 1.49322 1.86732 1.46131 1.10720 1.75075 1.06023 1.21427 0.93052 1.01458 0.83172 1.22703 0.98817 0.99534 0.92734 0.88970 1.23875 1.01105 0.94324 1.01559 1.21057 0.88353 0.94031 0.91077 0.92003 1.42163 1.26912 1.19995 1.45355 1.19251 1.05748 0.99223 1.13164 0.91045 1.24767 0.98727 0.96935 1.00469 1.69654 1.25719 1.16890 1.45863 0.86237 0.79173 0.79054 0.81537 1.21186 1.21677 1.21218 1.23448 0.98499 1.01355 0.95524 0.89298 0.88679 0.88147 0.91788 0.91819 0.92834 0.92948 0.92416 0.88818 0.88917 0.76503 0.92075 0.91795 0.91457 0.91551 0.78121 0.93384 0.91383 0.90510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 13.22 29.02 0.38 -1.36 16 2 C -0.15 -1.50 6.76 -36.03 -0.24 -1.75 16 3 C -0.04 -0.39 1.82 -91.77 -0.17 -0.56 16 4 H 0.08 0.85 7.60 -51.93 -0.39 0.45 16 5 C -0.12 -0.83 5.39 -26.73 -0.14 -0.98 16 6 C -0.15 -1.05 9.73 37.16 0.36 -0.69 16 7 C -0.14 -1.20 5.16 -27.89 -0.14 -1.35 16 8 C 0.51 6.29 7.58 -10.98 -0.08 6.21 16 9 O -0.54 -8.43 14.17 5.56 0.08 -8.35 16 10 N -0.73 -8.72 5.56 -60.29 -0.33 -9.06 16 11 C 0.13 1.78 5.51 -4.04 -0.02 1.76 16 12 C -0.12 -1.77 3.63 -89.80 -0.33 -2.10 16 13 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 14 C -0.17 -2.77 7.43 -25.92 -0.19 -2.96 16 15 C 0.17 3.25 4.56 -67.12 -0.31 2.94 16 16 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 17 N -0.71 -17.29 5.31 -52.64 -0.28 -17.57 16 18 C -0.24 -6.64 9.97 -15.06 -0.15 -6.79 16 19 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -27.70 13.06 55.49 0.72 -26.97 16 22 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 C -0.15 -2.39 7.39 -25.91 -0.19 -2.58 16 27 H 0.09 0.85 8.06 -52.49 -0.42 0.43 16 28 H 0.09 1.07 7.83 -52.49 -0.41 0.66 16 29 H 0.10 0.92 8.06 -52.49 -0.42 0.50 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.42 7.38 -51.93 -0.38 0.04 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.40 4.13 8.47 -40.82 -0.35 3.79 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.90 7.84 -51.93 -0.41 0.49 16 40 H 0.07 1.01 7.90 -51.93 -0.41 0.60 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.38 9.96 7.90 -40.82 -0.32 9.64 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 LS Contribution 367.41 15.07 5.54 5.54 Total: -1.00 -30.88 367.41 -8.75 -39.63 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -8.14 Total: 10.39 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -1.32 Total: -10.66 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: 0.11 Total: -53.60 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.08 Total: -8.35 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.88 -8.75 -39.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263870247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.820 kcal (2) G-P(sol) polarization free energy of solvation -30.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds