Wall clock time and date at job start Tue Mar 31 2020 03:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 120.00137 * 2 1 4 4 H 1.09004 * 109.46990 * 359.97438 * 3 2 1 5 5 C 1.53002 * 109.46879 * 239.99926 * 3 2 1 6 6 C 1.53001 * 109.47112 * 65.00054 * 5 3 2 7 7 C 1.52994 * 109.47383 * 120.00149 * 3 2 1 8 8 C 1.50696 * 109.47059 * 295.00035 * 7 3 2 9 9 O 1.21280 * 120.00124 * 359.97438 * 8 7 3 10 10 N 1.34783 * 120.00188 * 180.02562 * 8 7 3 11 11 C 1.46503 * 119.99973 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46758 * 179.97438 * 11 10 8 13 13 H 1.09003 * 112.84868 * 316.19372 * 12 11 10 14 14 C 1.53780 * 113.61485 * 87.50468 * 12 11 10 15 15 C 1.53778 * 87.08092 * 139.97987 * 14 12 11 16 16 H 1.08998 * 113.68905 * 220.01231 * 15 14 12 17 17 N 1.46499 * 113.61557 * 89.11527 * 15 14 12 18 18 C 1.36939 * 119.99933 * 107.77738 * 17 15 14 19 19 H 1.08001 * 119.99700 * 359.72658 * 18 17 15 20 20 C 1.38810 * 120.00095 * 179.71972 * 18 17 15 21 21 N 1.31624 * 119.99740 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00044 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47173 * 60.00435 * 22 20 18 24 24 H 1.48497 * 109.47172 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47132 * 300.00314 * 22 20 18 26 26 C 1.53783 * 113.61069 * 185.00291 * 12 11 10 27 27 H 1.08001 * 120.00377 * 180.02562 * 1 2 3 28 28 H 1.07997 * 120.00148 * 359.97438 * 1 2 3 29 29 H 1.07998 * 119.99776 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47214 * 184.99770 * 5 3 2 31 31 H 1.08997 * 109.47552 * 304.99698 * 5 3 2 32 32 H 1.08997 * 109.47202 * 59.99431 * 6 5 3 33 33 H 1.08996 * 109.47153 * 179.97438 * 6 5 3 34 34 H 1.09004 * 109.47290 * 300.00017 * 6 5 3 35 35 H 1.09003 * 109.47346 * 174.99831 * 7 3 2 36 36 H 1.09004 * 109.47481 * 54.99684 * 7 3 2 37 37 H 0.96995 * 119.99654 * 359.97438 * 10 8 7 38 38 H 1.09003 * 109.47210 * 59.99561 * 11 10 8 39 39 H 1.08991 * 109.46962 * 299.99561 * 11 10 8 40 40 H 1.08998 * 113.61038 * 25.43021 * 14 12 11 41 41 H 1.08998 * 113.61309 * 254.52603 * 14 12 11 42 42 H 0.97001 * 119.99790 * 287.49711 * 17 15 14 43 43 H 0.96998 * 119.99409 * 179.97438 * 21 20 18 44 44 H 1.09000 * 113.61551 * 105.47086 * 26 12 11 45 45 H 1.09004 * 113.69000 * 334.57222 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9431 1.3860 -1.2493 6 6 2.0564 1.4306 -2.4953 7 6 2.9432 1.3861 1.2492 8 6 2.0698 1.4300 2.4765 9 8 0.8627 1.4000 2.3632 10 7 2.6302 1.5038 3.7001 11 6 1.7812 1.5470 4.8932 12 6 2.6609 1.6280 6.1424 13 1 3.5112 0.9469 6.1062 14 6 3.0369 3.0654 6.5390 15 6 2.8222 2.6348 7.9996 16 1 2.3259 3.3892 8.6100 17 7 4.0254 2.0909 8.6340 18 6 4.6878 2.8209 9.5847 19 1 4.3255 3.7994 9.8634 20 6 5.8245 2.3031 10.1900 21 7 6.2661 1.1107 9.8499 22 14 6.7284 3.2992 11.4862 23 1 5.8136 3.5799 12.6218 24 1 7.9011 2.5293 11.9734 25 1 7.1894 4.5804 10.8936 26 6 1.8693 1.5556 7.4589 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8499 -0.9353 0.0004 30 1 3.5540 2.2877 -1.2057 31 1 3.5906 0.5104 -1.2952 32 1 1.4090 2.3062 -2.4494 33 1 2.6830 1.4887 -3.3853 34 1 1.4454 0.5289 -2.5390 35 1 3.5541 2.2878 1.2055 36 1 3.5906 0.5104 1.2951 37 1 3.5956 1.5282 3.7906 38 1 1.1702 0.6454 4.9372 39 1 1.1339 2.4227 4.8469 40 1 2.3232 3.8140 6.1950 41 1 4.0697 3.3260 6.3080 42 1 4.3506 1.2120 8.3836 43 1 7.0607 0.7491 10.2727 44 1 1.9597 0.5974 7.9706 45 1 0.8362 1.8911 7.3678 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263870247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:29 Heat of formation + Delta-G solvation = -27.432739 kcal Electronic energy + Delta-G solvation = -21440.446439 eV Core-core repulsion = 18264.734230 eV Total energy + Delta-G solvation = -3175.712209 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.95197 -39.93703 -37.66143 -35.89501 -34.89117 -32.60072 -32.19973 -31.30994 -28.59226 -26.43701 -25.93255 -25.13140 -23.02213 -22.48264 -21.44399 -20.43249 -19.78901 -19.32271 -17.85042 -17.10835 -16.67024 -16.61571 -15.96246 -15.78101 -15.61091 -15.34085 -14.89295 -14.70757 -14.55831 -14.40580 -13.96240 -13.66139 -13.28878 -13.00384 -12.96580 -12.91113 -12.77823 -12.57706 -12.20127 -12.17593 -12.05045 -12.02666 -11.66713 -11.52433 -11.47261 -11.33741 -10.99101 -10.87219 -10.69376 -10.05173 -9.89350 -9.00038 -7.95285 -5.23625 1.48277 1.50711 1.56171 1.56839 1.79098 2.33152 2.56027 3.37150 3.71091 3.77108 3.81073 3.86958 3.94704 3.96897 4.16958 4.33003 4.39077 4.41648 4.43713 4.47772 4.60146 4.68814 4.73705 4.80087 4.87730 4.92512 4.99547 5.03181 5.08165 5.09399 5.12501 5.20871 5.31259 5.37019 5.41296 5.48124 5.51112 5.60054 5.67010 5.85565 6.07715 6.28358 6.66470 7.33339 7.37122 8.10386 8.32951 9.27795 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.033086 B = 0.002595 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.063519 B =10787.416481 C =11219.955897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.149 4.149 3 C -0.043 4.043 4 H 0.061 0.939 5 C -0.112 4.112 6 C -0.152 4.152 7 C -0.131 4.131 8 C 0.503 3.497 9 O -0.574 6.574 10 N -0.724 5.724 11 C 0.143 3.857 12 C -0.101 4.101 13 H 0.081 0.919 14 C -0.151 4.151 15 C 0.144 3.856 16 H 0.059 0.941 17 N -0.720 5.720 18 C -0.244 4.244 19 H 0.076 0.924 20 C -0.075 4.075 21 N -0.969 5.969 22 Si 0.973 3.027 23 H -0.279 1.279 24 H -0.296 1.296 25 H -0.278 1.278 26 C -0.136 4.136 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.410 0.590 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.049 0.951 42 H 0.374 0.626 43 H 0.251 0.749 44 H 0.056 0.944 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.382 0.135 -22.146 23.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.167 4.167 3 C -0.062 4.062 4 H 0.080 0.920 5 C -0.149 4.149 6 C -0.209 4.209 7 C -0.170 4.170 8 C 0.291 3.709 9 O -0.454 6.454 10 N -0.376 5.376 11 C 0.019 3.981 12 C -0.120 4.120 13 H 0.100 0.900 14 C -0.192 4.192 15 C 0.034 3.966 16 H 0.077 0.923 17 N -0.358 5.358 18 C -0.376 4.376 19 H 0.094 0.906 20 C -0.267 4.267 21 N -0.619 5.619 22 Si 0.802 3.198 23 H -0.205 1.205 24 H -0.222 1.222 25 H -0.204 1.204 26 C -0.176 4.176 27 H 0.112 0.888 28 H 0.100 0.900 29 H 0.129 0.871 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.246 0.754 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.108 0.892 41 H 0.068 0.932 42 H 0.207 0.793 43 H 0.060 0.940 44 H 0.075 0.925 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.193 0.259 -22.076 23.548 hybrid contribution 1.024 -0.070 1.018 1.445 sum -7.169 0.189 -21.058 22.245 Atomic orbital electron populations 1.23694 0.96477 1.00935 1.00752 1.22851 0.95894 0.98014 0.99926 1.20141 0.96533 0.95785 0.93714 0.92043 1.21526 0.97600 1.03060 0.92742 1.21763 0.99898 1.01529 0.97724 1.21777 0.98329 1.06359 0.90544 1.21300 0.89142 0.74994 0.85468 1.90687 1.16552 1.50929 1.87219 1.46099 1.11123 1.74795 1.05630 1.21194 0.92702 1.01203 0.83038 1.22479 0.98339 0.98073 0.93080 0.90046 1.23687 1.00766 0.95835 0.98899 1.21384 0.87570 0.95431 0.92262 0.92329 1.42289 1.28367 1.19553 1.45565 1.19636 1.05579 0.99369 1.12971 0.90610 1.25553 1.00023 0.98138 1.03022 1.69805 1.26189 1.18550 1.47401 0.85218 0.77696 0.77705 0.79181 1.20489 1.22233 1.20378 1.23357 0.99259 0.99591 0.95373 0.88763 0.89994 0.87101 0.90629 0.90784 0.93374 0.91824 0.93130 0.86593 0.86912 0.75388 0.92505 0.91899 0.89197 0.93226 0.79348 0.93995 0.92505 0.87865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.85 13.22 67.78 0.90 -2.95 16 2 C -0.15 -2.80 6.76 25.65 0.17 -2.63 16 3 C -0.04 -0.71 1.82 -11.54 -0.02 -0.73 16 4 H 0.06 1.26 7.60 -2.38 -0.02 1.24 16 5 C -0.11 -1.33 5.39 30.60 0.16 -1.16 16 6 C -0.15 -1.89 9.73 71.98 0.70 -1.19 16 7 C -0.13 -1.97 5.16 29.84 0.15 -1.81 16 8 C 0.50 11.60 7.58 87.65 0.66 12.27 16 9 O -0.57 -17.50 14.17 -3.03 -0.04 -17.54 16 10 N -0.72 -15.94 5.56 -463.05 -2.57 -18.51 16 11 C 0.14 3.58 5.51 86.38 0.48 4.06 16 12 C -0.10 -2.86 3.63 -10.27 -0.04 -2.90 16 13 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 14 C -0.15 -4.76 7.43 31.12 0.23 -4.53 16 15 C 0.14 5.46 4.56 45.52 0.21 5.67 16 16 H 0.06 2.24 8.10 -2.39 -0.02 2.22 16 17 N -0.72 -35.42 5.31 -320.45 -1.70 -37.12 16 18 C -0.24 -13.33 9.97 84.03 0.84 -12.50 16 19 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 20 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 21 N -0.97 -58.35 13.06 21.65 0.28 -58.07 16 22 Si 0.97 45.48 29.55 68.60 2.03 47.51 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 24 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 26 C -0.14 -4.19 7.39 31.12 0.23 -3.96 16 27 H 0.09 1.81 8.06 -2.91 -0.02 1.79 16 28 H 0.08 1.92 7.83 -2.91 -0.02 1.90 16 29 H 0.11 1.83 8.06 -2.91 -0.02 1.81 16 30 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.05 0.69 7.38 -2.38 -0.02 0.68 16 35 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.41 7.55 8.47 -92.71 -0.79 6.76 16 38 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.06 1.63 7.84 -2.39 -0.02 1.61 16 40 H 0.09 2.45 7.90 -2.39 -0.02 2.43 16 41 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.37 19.70 7.90 -92.71 -0.73 18.97 16 43 H 0.25 14.73 8.31 -92.71 -0.77 13.95 16 44 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.10 2.65 8.10 -2.38 -0.02 2.63 16 Total: -1.00 -66.58 367.41 2.57 -64.01 By element: Atomic # 1 Polarization: 36.44 SS G_CDS: -0.57 Total: 35.88 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: 5.14 Total: -16.15 kcal Atomic # 7 Polarization: -109.70 SS G_CDS: -3.99 Total: -113.69 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.04 Total: -17.54 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -66.58 2.57 -64.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263870247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.572 kcal (2) G-P(sol) polarization free energy of solvation -66.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds