Wall clock time and date at job start Tue Mar 31 2020 03:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 119.99934 * 2 1 4 4 H 1.09000 * 109.47367 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.47205 * 239.99966 * 3 2 1 6 6 C 1.53002 * 109.47109 * 65.00121 * 5 3 2 7 7 C 1.53009 * 109.46861 * 120.00263 * 3 2 1 8 8 C 1.50702 * 109.46551 * 185.00251 * 7 3 2 9 9 O 1.21273 * 120.00445 * 359.97438 * 8 7 3 10 10 N 1.34777 * 119.99376 * 179.97438 * 8 7 3 11 11 C 1.47025 * 125.65018 * 359.95742 * 10 8 7 12 12 C 1.54327 * 107.27126 * 181.09053 * 11 10 8 13 13 C 1.55155 * 102.94065 * 22.19595 * 12 11 10 14 14 H 1.09007 * 111.03795 * 82.58410 * 13 12 11 15 15 C 1.53001 * 111.00412 * 206.41899 * 13 12 11 16 16 N 1.46490 * 109.47264 * 287.19518 * 15 13 12 17 17 C 1.36935 * 120.00121 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00139 * 0.02562 * 17 16 15 19 19 C 1.38816 * 120.00401 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99569 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00172 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46685 * 269.99637 * 21 19 17 23 23 H 1.48494 * 109.47357 * 29.99716 * 21 19 17 24 24 H 1.48502 * 109.47120 * 150.00435 * 21 19 17 25 25 C 1.47425 * 125.64832 * 179.97438 * 10 8 7 26 26 H 1.07994 * 120.00094 * 359.97438 * 1 2 3 27 27 H 1.08006 * 119.99620 * 179.97438 * 1 2 3 28 28 H 1.08004 * 120.00341 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47105 * 185.00191 * 5 3 2 30 30 H 1.09003 * 109.47296 * 305.00078 * 5 3 2 31 31 H 1.08995 * 109.47033 * 179.97438 * 6 5 3 32 32 H 1.08993 * 109.46969 * 299.99966 * 6 5 3 33 33 H 1.09003 * 109.47077 * 59.99823 * 6 5 3 34 34 H 1.08991 * 109.46907 * 65.00112 * 7 3 2 35 35 H 1.09004 * 109.46741 * 304.99961 * 7 3 2 36 36 H 1.09000 * 109.88473 * 300.51310 * 11 10 8 37 37 H 1.09001 * 109.88122 * 61.52693 * 11 10 8 38 38 H 1.08996 * 110.72473 * 263.83287 * 12 11 10 39 39 H 1.09001 * 110.71926 * 140.55777 * 12 11 10 40 40 H 1.09003 * 109.46836 * 167.19226 * 15 13 12 41 41 H 1.08999 * 109.47071 * 47.20265 * 15 13 12 42 42 H 0.97000 * 120.00577 * 0.02562 * 16 15 13 43 43 H 0.97001 * 119.99885 * 359.97438 * 20 19 17 44 44 H 1.09001 * 110.36548 * 36.99406 * 25 10 8 45 45 H 1.09001 * 110.46206 * 274.72271 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9431 1.3862 -1.2492 6 6 2.0564 1.4308 -2.4953 7 6 2.9432 1.3861 1.2493 8 6 3.6019 2.7400 1.3127 9 8 3.3893 3.5592 0.4442 10 7 4.4275 3.0404 2.3349 11 6 4.7711 2.1460 3.4501 12 6 5.7201 2.9242 4.3858 13 6 5.4094 4.4050 4.0425 14 1 4.5276 4.7545 4.5797 15 6 6.6156 5.3002 4.3334 16 7 6.7724 5.4529 5.7819 17 6 7.7927 6.2160 6.2835 18 1 8.4817 6.7057 5.6112 19 6 7.9417 6.3603 7.6561 20 7 7.1023 5.7631 8.4754 21 14 9.3332 7.4020 8.3402 22 1 10.5317 6.5505 8.5501 23 1 9.6584 8.4864 7.3793 24 1 8.9157 7.9967 9.6353 25 6 5.1353 4.3203 2.5200 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9354 -0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 3.5540 2.2879 -1.2055 30 1 3.5906 0.5105 -1.2952 31 1 2.6831 1.4890 -3.3852 32 1 1.4456 0.5292 -2.5390 33 1 1.4089 2.3065 -2.4494 34 1 3.7085 0.6113 1.2055 35 1 2.3279 1.2394 2.1370 36 1 3.8677 1.8630 3.9903 37 1 5.2703 1.2546 3.0701 38 1 6.7606 2.6871 4.1639 39 1 5.4899 2.7139 5.4302 40 1 6.4596 6.2789 3.8796 41 1 7.5143 4.8456 3.9165 42 1 6.1539 5.0128 6.3858 43 1 6.3795 5.2226 8.1201 44 1 4.5062 5.1513 2.2009 45 1 6.0734 4.3207 1.9649 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266008655.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:34 Heat of formation + Delta-G solvation = -22.981666 kcal Electronic energy + Delta-G solvation = -21791.805809 eV Core-core repulsion = 18616.286612 eV Total energy + Delta-G solvation = -3175.519196 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.28610 -38.20696 -36.63617 -34.94811 -32.52632 -32.02850 -30.75976 -29.98702 -28.89402 -25.74899 -24.23779 -22.88732 -22.57023 -21.95856 -20.16666 -19.91337 -19.12721 -17.35324 -17.06259 -16.38636 -15.76323 -15.16791 -14.89662 -14.77894 -14.24547 -13.91281 -13.85265 -13.74145 -13.43004 -13.13793 -13.05444 -12.65575 -12.55182 -12.44795 -12.09792 -11.80915 -11.42429 -11.35211 -11.02669 -10.94066 -10.81443 -10.79170 -10.68747 -10.51476 -10.41524 -10.02414 -9.79457 -9.58905 -9.19767 -8.90265 -8.66263 -7.03008 -6.12828 -3.12590 1.98482 2.57341 2.94667 3.50903 3.55700 3.69775 4.28163 4.48772 4.59036 4.66194 4.71120 4.77840 4.94387 4.96704 5.00061 5.10231 5.20098 5.22870 5.29881 5.37640 5.49279 5.55072 5.57793 5.61077 5.70232 5.76062 5.81952 5.90264 5.91324 5.93643 5.93995 6.10780 6.14833 6.18958 6.23295 6.33280 6.36892 6.51988 6.62447 6.73129 7.48266 7.79412 8.11170 8.73773 9.20416 10.06747 10.21446 11.35948 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.046602 B = 0.002660 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.692808 B =10523.862420 C =10873.687213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C -0.046 4.046 4 H 0.082 0.918 5 C -0.122 4.122 6 C -0.147 4.147 7 C -0.129 4.129 8 C 0.527 3.473 9 O -0.541 6.541 10 N -0.618 5.618 11 C 0.099 3.901 12 C -0.122 4.122 13 C -0.107 4.107 14 H 0.083 0.917 15 C 0.170 3.830 16 N -0.742 5.742 17 C -0.331 4.331 18 H 0.065 0.935 19 C -0.046 4.046 20 N -0.945 5.945 21 Si 1.083 2.917 22 H -0.295 1.295 23 H -0.295 1.295 24 H -0.288 1.288 25 C 0.113 3.887 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.023 0.977 41 H 0.024 0.976 42 H 0.367 0.633 43 H 0.255 0.745 44 H 0.077 0.923 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.382 -13.488 -16.825 23.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.163 4.163 3 C -0.065 4.065 4 H 0.100 0.900 5 C -0.159 4.159 6 C -0.205 4.205 7 C -0.169 4.169 8 C 0.316 3.684 9 O -0.419 6.419 10 N -0.352 5.352 11 C -0.024 4.024 12 C -0.160 4.160 13 C -0.127 4.127 14 H 0.102 0.898 15 C 0.042 3.958 16 N -0.388 5.388 17 C -0.462 4.462 18 H 0.083 0.917 19 C -0.243 4.243 20 N -0.591 5.591 21 Si 0.914 3.086 22 H -0.223 1.223 23 H -0.221 1.221 24 H -0.214 1.214 25 C -0.010 4.010 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.126 0.874 29 H 0.102 0.898 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.200 0.800 43 H 0.066 0.934 44 H 0.096 0.904 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.675 -12.392 -16.116 22.514 hybrid contribution -0.858 -0.836 -1.122 1.641 sum -10.533 -13.228 -17.238 24.147 Atomic orbital electron populations 1.23862 0.95940 1.01808 1.01308 1.22927 0.95925 0.97981 0.99437 1.20174 0.96904 0.95710 0.93714 0.89985 1.21660 0.98062 1.02856 0.93362 1.21724 0.99771 1.01548 0.97412 1.21675 1.00066 0.94906 1.00271 1.20327 0.78212 0.89613 0.80272 1.90670 1.62485 1.50727 1.37974 1.48601 1.45969 1.16565 1.24069 1.22130 0.99109 0.93390 0.87726 1.22660 0.99452 0.94401 0.99445 1.22596 1.00425 0.95669 0.94011 0.89847 1.20482 0.92998 0.95434 0.86867 1.42320 1.35480 1.60761 1.00247 1.20063 1.06994 1.25858 0.93314 0.91698 1.25790 1.04044 1.02500 0.91982 1.70861 1.17692 1.34490 1.36012 0.83189 0.74534 0.75297 0.75587 1.22297 1.22135 1.21368 1.22226 0.96623 0.85851 0.96252 0.88588 0.88544 0.87413 0.89762 0.92640 0.93073 0.92993 0.92809 0.88899 0.88887 0.91472 0.91483 0.90215 0.89732 0.95934 0.95863 0.80008 0.93423 0.90448 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.40 14.32 29.01 0.42 -0.99 16 2 C -0.14 -1.11 7.75 -36.02 -0.28 -1.39 16 3 C -0.05 -0.43 1.80 -91.77 -0.17 -0.60 16 4 H 0.08 0.90 7.60 -51.93 -0.39 0.50 16 5 C -0.12 -1.20 5.18 -26.73 -0.14 -1.34 16 6 C -0.15 -1.31 9.73 37.16 0.36 -0.95 16 7 C -0.13 -1.20 4.35 -27.88 -0.12 -1.32 16 8 C 0.53 6.83 7.53 -10.98 -0.08 6.75 16 9 O -0.54 -8.72 14.24 5.56 0.08 -8.64 16 10 N -0.62 -7.92 3.33 -170.50 -0.57 -8.49 16 11 C 0.10 1.07 6.49 -3.06 -0.02 1.05 16 12 C -0.12 -1.62 6.37 -24.90 -0.16 -1.78 16 13 C -0.11 -1.66 3.05 -88.46 -0.27 -1.93 16 14 H 0.08 1.35 8.14 -51.92 -0.42 0.93 16 15 C 0.17 3.35 5.71 -4.05 -0.02 3.32 16 16 N -0.74 -18.37 5.55 -59.91 -0.33 -18.71 16 17 C -0.33 -9.33 9.99 -15.06 -0.15 -9.48 16 18 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 19 C -0.05 -1.33 5.50 -17.43 -0.10 -1.42 16 20 N -0.94 -29.01 13.70 55.49 0.76 -28.25 16 21 Si 1.08 25.89 29.92 -169.99 -5.09 20.81 16 22 H -0.30 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 C 0.11 1.61 6.38 -2.52 -0.02 1.59 16 26 H 0.10 0.71 7.83 -52.49 -0.41 0.30 16 27 H 0.10 0.58 8.06 -52.48 -0.42 0.16 16 28 H 0.11 0.72 8.06 -52.48 -0.42 0.29 16 29 H 0.08 1.04 5.88 -51.93 -0.31 0.74 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.42 7.38 -51.93 -0.38 0.04 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.08 1.10 7.91 -51.93 -0.41 0.69 16 39 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.02 0.46 7.97 -51.93 -0.41 0.05 16 42 H 0.37 9.18 6.50 -40.82 -0.27 8.91 16 43 H 0.25 7.64 6.77 -40.82 -0.28 7.36 16 44 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 45 H 0.07 0.98 8.03 -51.93 -0.42 0.56 16 LS Contribution 361.47 15.07 5.45 5.45 Total: -1.00 -32.51 361.47 -8.42 -40.93 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -7.98 Total: 5.40 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -0.74 Total: -8.49 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: -0.14 Total: -55.44 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.08 Total: -8.64 kcal Atomic # 14 Polarization: 25.89 SS G_CDS: -5.09 Total: 20.81 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.51 -8.42 -40.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266008655.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.945 kcal (2) G-P(sol) polarization free energy of solvation -32.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds