Wall clock time and date at job start Tue Mar 31 2020 03:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 119.99934 * 2 1 4 4 H 1.09000 * 109.47367 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.47205 * 239.99966 * 3 2 1 6 6 C 1.53002 * 109.47109 * 65.00121 * 5 3 2 7 7 C 1.53009 * 109.46861 * 120.00263 * 3 2 1 8 8 C 1.50702 * 109.46551 * 185.00251 * 7 3 2 9 9 O 1.21273 * 120.00445 * 359.97438 * 8 7 3 10 10 N 1.34777 * 119.99376 * 179.97438 * 8 7 3 11 11 C 1.47025 * 125.65018 * 359.95742 * 10 8 7 12 12 C 1.54327 * 107.27126 * 181.09053 * 11 10 8 13 13 C 1.55155 * 102.94065 * 22.19595 * 12 11 10 14 14 H 1.09007 * 111.03795 * 82.58410 * 13 12 11 15 15 C 1.53001 * 111.00412 * 206.41899 * 13 12 11 16 16 N 1.46490 * 109.47264 * 287.19518 * 15 13 12 17 17 C 1.36935 * 120.00121 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00139 * 0.02562 * 17 16 15 19 19 C 1.38816 * 120.00401 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99569 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00172 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46685 * 269.99637 * 21 19 17 23 23 H 1.48494 * 109.47357 * 29.99716 * 21 19 17 24 24 H 1.48502 * 109.47120 * 150.00435 * 21 19 17 25 25 C 1.47425 * 125.64832 * 179.97438 * 10 8 7 26 26 H 1.07994 * 120.00094 * 359.97438 * 1 2 3 27 27 H 1.08006 * 119.99620 * 179.97438 * 1 2 3 28 28 H 1.08004 * 120.00341 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47105 * 185.00191 * 5 3 2 30 30 H 1.09003 * 109.47296 * 305.00078 * 5 3 2 31 31 H 1.08995 * 109.47033 * 179.97438 * 6 5 3 32 32 H 1.08993 * 109.46969 * 299.99966 * 6 5 3 33 33 H 1.09003 * 109.47077 * 59.99823 * 6 5 3 34 34 H 1.08991 * 109.46907 * 65.00112 * 7 3 2 35 35 H 1.09004 * 109.46741 * 304.99961 * 7 3 2 36 36 H 1.09000 * 109.88473 * 300.51310 * 11 10 8 37 37 H 1.09001 * 109.88122 * 61.52693 * 11 10 8 38 38 H 1.08996 * 110.72473 * 263.83287 * 12 11 10 39 39 H 1.09001 * 110.71926 * 140.55777 * 12 11 10 40 40 H 1.09003 * 109.46836 * 167.19226 * 15 13 12 41 41 H 1.08999 * 109.47071 * 47.20265 * 15 13 12 42 42 H 0.97000 * 120.00577 * 0.02562 * 16 15 13 43 43 H 0.97001 * 119.99885 * 359.97438 * 20 19 17 44 44 H 1.09001 * 110.36548 * 36.99406 * 25 10 8 45 45 H 1.09001 * 110.46206 * 274.72271 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9431 1.3862 -1.2492 6 6 2.0564 1.4308 -2.4953 7 6 2.9432 1.3861 1.2493 8 6 3.6019 2.7400 1.3127 9 8 3.3893 3.5592 0.4442 10 7 4.4275 3.0404 2.3349 11 6 4.7711 2.1460 3.4501 12 6 5.7201 2.9242 4.3858 13 6 5.4094 4.4050 4.0425 14 1 4.5276 4.7545 4.5797 15 6 6.6156 5.3002 4.3334 16 7 6.7724 5.4529 5.7819 17 6 7.7927 6.2160 6.2835 18 1 8.4817 6.7057 5.6112 19 6 7.9417 6.3603 7.6561 20 7 7.1023 5.7631 8.4754 21 14 9.3332 7.4020 8.3402 22 1 10.5317 6.5505 8.5501 23 1 9.6584 8.4864 7.3793 24 1 8.9157 7.9967 9.6353 25 6 5.1353 4.3203 2.5200 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9354 -0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 3.5540 2.2879 -1.2055 30 1 3.5906 0.5105 -1.2952 31 1 2.6831 1.4890 -3.3852 32 1 1.4456 0.5292 -2.5390 33 1 1.4089 2.3065 -2.4494 34 1 3.7085 0.6113 1.2055 35 1 2.3279 1.2394 2.1370 36 1 3.8677 1.8630 3.9903 37 1 5.2703 1.2546 3.0701 38 1 6.7606 2.6871 4.1639 39 1 5.4899 2.7139 5.4302 40 1 6.4596 6.2789 3.8796 41 1 7.5143 4.8456 3.9165 42 1 6.1539 5.0128 6.3858 43 1 6.3795 5.2226 8.1201 44 1 4.5062 5.1513 2.2009 45 1 6.0734 4.3207 1.9649 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266008655.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:33 Heat of formation + Delta-G solvation = -42.142296 kcal Electronic energy + Delta-G solvation = -21792.636676 eV Core-core repulsion = 18616.286612 eV Total energy + Delta-G solvation = -3176.350064 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.31040 -39.28364 -37.52183 -36.72279 -34.10798 -32.66202 -32.08593 -31.07019 -30.15369 -27.13237 -25.58151 -24.36508 -23.86019 -22.68102 -21.48077 -20.56194 -20.10196 -19.38165 -18.10546 -17.59836 -16.68345 -16.42131 -16.08868 -15.74814 -15.60520 -15.33260 -15.09117 -14.93809 -14.68616 -14.23127 -13.99841 -13.83879 -13.50250 -13.49077 -13.07371 -12.81202 -12.75791 -12.61103 -12.24680 -12.10193 -12.04001 -11.88425 -11.86931 -11.74352 -11.64708 -11.55861 -11.27409 -10.93937 -10.75713 -10.20369 -9.70041 -9.12475 -8.41025 -5.35028 1.40914 1.58897 1.59357 1.69393 1.83801 1.96375 2.70433 3.28332 3.39305 3.57172 3.62277 3.75665 3.80914 4.05563 4.08077 4.18032 4.24392 4.31276 4.38776 4.42371 4.46685 4.53057 4.54727 4.60255 4.72125 4.74909 4.80255 4.91822 4.94853 4.99149 5.02818 5.09695 5.13913 5.15989 5.23756 5.30811 5.41913 5.44114 5.57757 5.77288 5.95152 6.49673 6.49839 7.08253 7.11570 7.98616 8.09169 9.11494 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.046602 B = 0.002660 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.692808 B =10523.862420 C =10873.687213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.146 4.146 3 C -0.044 4.044 4 H 0.059 0.941 5 C -0.121 4.121 6 C -0.145 4.145 7 C -0.121 4.121 8 C 0.521 3.479 9 O -0.580 6.580 10 N -0.620 5.620 11 C 0.105 3.895 12 C -0.118 4.118 13 C -0.099 4.099 14 H 0.074 0.926 15 C 0.170 3.830 16 N -0.753 5.753 17 C -0.336 4.336 18 H 0.064 0.936 19 C -0.103 4.103 20 N -0.974 5.974 21 Si 1.130 2.870 22 H -0.282 1.282 23 H -0.276 1.276 24 H -0.293 1.293 25 C 0.120 3.880 26 H 0.088 0.912 27 H 0.112 0.888 28 H 0.126 0.874 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.041 0.959 34 H 0.118 0.882 35 H 0.110 0.890 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.015 0.985 41 H 0.026 0.974 42 H 0.363 0.637 43 H 0.246 0.754 44 H 0.064 0.936 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.347 -15.439 -17.344 25.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.164 4.164 3 C -0.063 4.063 4 H 0.077 0.923 5 C -0.158 4.158 6 C -0.202 4.202 7 C -0.160 4.160 8 C 0.312 3.688 9 O -0.460 6.460 10 N -0.353 5.353 11 C -0.016 4.016 12 C -0.156 4.156 13 C -0.118 4.118 14 H 0.093 0.907 15 C 0.043 3.957 16 N -0.398 5.398 17 C -0.468 4.468 18 H 0.082 0.918 19 C -0.294 4.294 20 N -0.622 5.622 21 Si 0.955 3.045 22 H -0.209 1.209 23 H -0.201 1.201 24 H -0.219 1.219 25 C -0.004 4.004 26 H 0.106 0.894 27 H 0.131 0.869 28 H 0.144 0.856 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.136 0.864 35 H 0.128 0.872 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.033 0.967 41 H 0.044 0.956 42 H 0.195 0.805 43 H 0.056 0.944 44 H 0.082 0.918 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.647 -14.367 -16.672 24.030 hybrid contribution -0.896 -0.199 -1.040 1.388 sum -10.544 -14.567 -17.713 25.241 Atomic orbital electron populations 1.24000 0.96016 1.02275 1.00565 1.22895 0.95936 0.97526 1.00048 1.20109 0.96530 0.96063 0.93600 0.92299 1.21615 0.98148 1.02001 0.94075 1.21702 0.99670 1.01540 0.97303 1.21722 1.00580 0.92873 1.00872 1.21059 0.77668 0.90651 0.79424 1.90661 1.63685 1.52243 1.39406 1.48685 1.45816 1.16133 1.24711 1.22221 0.99590 0.93198 0.86636 1.22611 1.00046 0.92946 1.00021 1.22367 0.98071 0.96439 0.94954 0.90740 1.20575 0.94995 0.96003 0.84078 1.42485 1.34735 1.60340 1.02238 1.20403 1.07341 1.25433 0.93598 0.91751 1.27200 1.05851 1.03523 0.92814 1.70964 1.18630 1.36071 1.36558 0.82592 0.72348 0.74549 0.75058 1.20910 1.20092 1.21895 1.22011 0.96693 0.86694 0.95005 0.89351 0.86935 0.85605 0.92680 0.91166 0.92685 0.91813 0.94015 0.86398 0.87160 0.89415 0.88607 0.90621 0.90128 0.96738 0.95587 0.80461 0.94371 0.91770 0.91116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.37 14.32 67.78 0.97 -1.40 16 2 C -0.15 -1.86 7.75 25.65 0.20 -1.66 16 3 C -0.04 -0.76 1.80 -11.54 -0.02 -0.78 16 4 H 0.06 1.28 7.60 -2.39 -0.02 1.26 16 5 C -0.12 -2.26 5.18 30.59 0.16 -2.10 16 6 C -0.14 -2.47 9.73 71.98 0.70 -1.77 16 7 C -0.12 -1.94 4.35 29.85 0.13 -1.81 16 8 C 0.52 12.91 7.53 87.66 0.66 13.57 16 9 O -0.58 -18.92 14.24 -3.01 -0.04 -18.96 16 10 N -0.62 -14.93 3.33 -811.74 -2.70 -17.63 16 11 C 0.11 1.97 6.49 86.73 0.56 2.53 16 12 C -0.12 -3.00 6.37 31.78 0.20 -2.79 16 13 C -0.10 -3.03 3.05 -9.40 -0.03 -3.06 16 14 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 15 C 0.17 6.74 5.71 86.38 0.49 7.24 16 16 N -0.75 -37.66 5.55 -343.47 -1.90 -39.57 16 17 C -0.34 -18.99 9.99 84.03 0.84 -18.15 16 18 H 0.06 3.57 7.83 -2.91 -0.02 3.55 16 19 C -0.10 -5.94 5.50 84.86 0.47 -5.47 16 20 N -0.97 -60.39 13.70 21.65 0.30 -60.09 16 21 Si 1.13 51.81 29.92 68.60 2.05 53.86 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 23 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 24 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 25 C 0.12 3.37 6.38 86.86 0.55 3.92 16 26 H 0.09 1.21 7.83 -2.91 -0.02 1.19 16 27 H 0.11 1.03 8.06 -2.91 -0.02 1.01 16 28 H 0.13 1.18 8.06 -2.91 -0.02 1.16 16 29 H 0.05 1.37 5.88 -2.39 -0.01 1.36 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 0.93 7.38 -2.39 -0.02 0.91 16 33 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.08 1.99 7.91 -2.39 -0.02 1.97 16 39 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.03 1.03 7.97 -2.39 -0.02 1.01 16 42 H 0.36 18.50 6.50 -92.71 -0.60 17.90 16 43 H 0.25 15.05 6.77 -92.71 -0.63 14.42 16 44 H 0.06 1.97 8.04 -2.39 -0.02 1.95 16 45 H 0.07 1.97 8.03 -2.39 -0.02 1.95 16 Total: -1.00 -70.76 361.47 4.07 -66.70 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.48 Total: 27.42 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: 5.89 Total: -11.73 kcal Atomic # 7 Polarization: -112.98 SS G_CDS: -4.31 Total: -117.29 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.04 Total: -18.96 kcal Atomic # 14 Polarization: 51.81 SS G_CDS: 2.05 Total: 53.86 kcal Total: -70.76 4.07 -66.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266008655.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.554 kcal (2) G-P(sol) polarization free energy of solvation -70.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds