Wall clock time and date at job start Tue Mar 31 2020 03:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 119.99890 * 2 1 4 4 H 1.09000 * 109.47085 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47002 * 119.99869 * 3 2 1 6 6 C 1.53001 * 109.47318 * 294.99903 * 5 3 2 7 7 C 1.53009 * 109.46910 * 239.99544 * 3 2 1 8 8 C 1.50702 * 109.46551 * 65.00333 * 7 3 2 9 9 O 1.21273 * 120.00445 * 359.97438 * 8 7 3 10 10 N 1.34777 * 119.99376 * 179.97438 * 8 7 3 11 11 C 1.47025 * 125.65018 * 359.95742 * 10 8 7 12 12 C 1.54327 * 107.27126 * 181.09053 * 11 10 8 13 13 C 1.55155 * 102.94065 * 22.19595 * 12 11 10 14 14 H 1.09007 * 111.03795 * 82.58410 * 13 12 11 15 15 C 1.53001 * 111.00412 * 206.41899 * 13 12 11 16 16 N 1.46490 * 109.47264 * 287.19518 * 15 13 12 17 17 C 1.36935 * 120.00121 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00139 * 0.02562 * 17 16 15 19 19 C 1.38816 * 120.00401 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99569 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00172 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47055 * 180.02562 * 21 19 17 23 23 H 1.48505 * 109.46653 * 299.99639 * 21 19 17 24 24 H 1.48495 * 109.47483 * 60.00002 * 21 19 17 25 25 C 1.47425 * 125.64832 * 179.97438 * 10 8 7 26 26 H 1.07997 * 119.99841 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.00056 * 179.97438 * 1 2 3 28 28 H 1.08007 * 119.99892 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47160 * 54.99939 * 5 3 2 30 30 H 1.09001 * 109.46919 * 174.99897 * 5 3 2 31 31 H 1.08991 * 109.47017 * 60.00186 * 6 5 3 32 32 H 1.09003 * 109.47119 * 180.02562 * 6 5 3 33 33 H 1.08999 * 109.46716 * 299.99675 * 6 5 3 34 34 H 1.08991 * 109.46907 * 305.00195 * 7 3 2 35 35 H 1.09004 * 109.46741 * 185.00043 * 7 3 2 36 36 H 1.09000 * 109.88473 * 300.51310 * 11 10 8 37 37 H 1.09001 * 109.88122 * 61.52693 * 11 10 8 38 38 H 1.08996 * 110.72473 * 263.83287 * 12 11 10 39 39 H 1.09001 * 110.71926 * 140.55777 * 12 11 10 40 40 H 1.09003 * 109.46836 * 167.19226 * 15 13 12 41 41 H 1.08999 * 109.47071 * 47.20265 * 15 13 12 42 42 H 0.97000 * 120.00577 * 0.02562 * 16 15 13 43 43 H 0.97001 * 119.99885 * 359.97438 * 20 19 17 44 44 H 1.09001 * 110.36548 * 36.99406 * 25 10 8 45 45 H 1.09005 * 110.36296 * 274.67565 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9430 1.3861 1.2492 6 6 2.0564 1.4307 2.4953 7 6 2.9432 1.3861 -1.2493 8 6 2.0698 1.4299 -2.4766 9 8 0.8627 1.3990 -2.3633 10 7 2.6302 1.5036 -3.7001 11 6 4.0728 1.5488 -3.9806 12 6 4.2388 1.6575 -5.5110 13 6 2.8742 2.2373 -5.9683 14 1 2.8512 3.3210 -5.8531 15 6 2.5635 1.8354 -7.4115 16 7 3.4247 2.5904 -8.3248 17 6 3.3256 2.3964 -9.6767 18 1 2.6123 1.6871 -10.0697 19 6 4.1421 3.1114 -10.5423 20 7 5.0118 3.9755 -10.0634 21 14 4.0064 2.8472 -12.3865 22 1 4.9804 3.7238 -13.0851 23 1 4.3012 1.4272 -12.7061 24 1 2.6302 3.1801 -12.8344 25 6 1.8983 1.5525 -4.9789 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9354 0.0004 29 1 3.5905 0.5105 1.2952 30 1 3.5539 2.2878 1.2056 31 1 1.4455 0.5291 2.5390 32 1 2.6830 1.4889 3.3853 33 1 1.4090 2.3064 2.4494 34 1 3.5906 0.5104 -1.2951 35 1 3.5541 2.2878 -1.2056 36 1 4.5174 2.4184 -3.4967 37 1 4.5497 0.6384 -3.6175 38 1 4.4073 0.6748 -5.9515 39 1 5.0513 2.3388 -5.7634 40 1 1.5188 2.0543 -7.6326 41 1 2.7457 0.7683 -7.5387 42 1 4.0657 3.2272 -7.9720 43 1 5.0820 4.1129 -9.1058 44 1 0.9886 2.1436 -4.8729 45 1 1.6593 0.5444 -5.3179 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266008657.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:44 Heat of formation + Delta-G solvation = -22.092614 kcal Electronic energy + Delta-G solvation = -21828.785674 eV Core-core repulsion = 18653.305030 eV Total energy + Delta-G solvation = -3175.480644 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.19891 -38.14915 -36.60600 -34.92718 -32.50801 -31.93575 -30.74545 -29.95609 -28.87926 -25.76439 -24.27074 -22.84717 -22.55722 -21.85373 -20.14375 -19.86893 -19.07445 -17.33949 -17.00479 -16.38741 -15.70539 -15.31588 -14.78005 -14.53405 -14.25810 -14.03771 -13.82465 -13.71989 -13.45214 -13.21075 -12.82943 -12.66019 -12.52440 -12.33072 -12.01705 -11.77936 -11.56865 -11.44014 -11.05654 -10.99596 -10.81462 -10.70867 -10.66676 -10.51058 -10.41478 -9.99109 -9.89738 -9.24848 -9.17041 -8.89951 -8.61401 -7.02623 -6.12264 -3.11950 2.32267 2.65881 2.96722 3.51276 3.54780 3.72150 4.32382 4.51349 4.57458 4.64386 4.68401 4.79441 4.95430 4.99592 5.03384 5.13641 5.22860 5.24341 5.27196 5.37708 5.47664 5.55416 5.59532 5.63383 5.64986 5.69905 5.83978 5.84454 5.92015 5.94808 5.95116 5.97039 6.06827 6.15875 6.24596 6.36404 6.61403 6.63468 6.74306 6.81642 7.53306 7.79371 8.18049 8.74215 9.20946 10.07292 10.22091 11.36413 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.048701 B = 0.002680 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.796688 B =10444.905102 C =10803.736266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.152 4.152 3 C -0.045 4.045 4 H 0.081 0.919 5 C -0.116 4.116 6 C -0.151 4.151 7 C -0.130 4.130 8 C 0.525 3.475 9 O -0.536 6.536 10 N -0.620 5.620 11 C 0.100 3.900 12 C -0.122 4.122 13 C -0.107 4.107 14 H 0.083 0.917 15 C 0.170 3.830 16 N -0.742 5.742 17 C -0.331 4.331 18 H 0.064 0.936 19 C -0.046 4.046 20 N -0.944 5.944 21 Si 1.081 2.919 22 H -0.285 1.285 23 H -0.295 1.295 24 H -0.295 1.295 25 C 0.114 3.886 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.367 0.633 43 H 0.254 0.746 44 H 0.076 0.924 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.509 -6.660 23.113 24.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C -0.063 4.063 4 H 0.099 0.901 5 C -0.154 4.154 6 C -0.208 4.208 7 C -0.170 4.170 8 C 0.314 3.686 9 O -0.412 6.412 10 N -0.355 5.355 11 C -0.023 4.023 12 C -0.160 4.160 13 C -0.127 4.127 14 H 0.101 0.899 15 C 0.042 3.958 16 N -0.388 5.388 17 C -0.462 4.462 18 H 0.083 0.917 19 C -0.243 4.243 20 N -0.590 5.590 21 Si 0.911 3.089 22 H -0.210 1.210 23 H -0.223 1.223 24 H -0.222 1.222 25 C -0.008 4.008 26 H 0.114 0.886 27 H 0.108 0.892 28 H 0.118 0.882 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.040 0.960 41 H 0.041 0.959 42 H 0.200 0.800 43 H 0.065 0.935 44 H 0.095 0.905 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.753 -6.381 21.683 22.769 hybrid contribution -0.333 -0.381 1.450 1.536 sum -3.086 -6.763 23.133 24.298 Atomic orbital electron populations 1.23692 0.95924 1.01293 0.99124 1.22619 0.95998 0.97030 1.01392 1.20169 0.96584 0.97113 0.92478 0.90085 1.21539 0.97859 1.01975 0.93990 1.21757 0.99828 1.02150 0.97088 1.21697 0.98613 1.04200 0.92449 1.20321 0.88810 0.76181 0.83312 1.90702 1.14704 1.49859 1.85981 1.48604 1.07861 1.73132 1.05867 1.22108 0.81242 1.01218 0.97723 1.22656 0.98390 1.02675 0.92233 1.22592 0.94049 1.00374 0.95668 0.89879 1.20482 0.94326 0.94941 0.86037 1.42316 1.44445 1.48906 1.03124 1.20032 1.20283 1.22636 0.83272 0.91749 1.25791 0.96004 0.96817 1.05708 1.70894 1.37228 1.36719 1.14154 0.83234 0.75608 0.75468 0.74573 1.21023 1.22257 1.22245 1.22204 0.95678 1.00858 0.82098 0.88640 0.89249 0.88155 0.91836 0.91796 0.92397 0.92919 0.92802 0.89019 0.88909 0.91555 0.91598 0.90261 0.89770 0.95953 0.95881 0.80006 0.93466 0.90518 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 13.22 29.01 0.38 -1.37 16 2 C -0.15 -1.52 6.76 -36.03 -0.24 -1.77 16 3 C -0.04 -0.41 1.82 -91.77 -0.17 -0.58 16 4 H 0.08 0.87 7.60 -51.93 -0.39 0.48 16 5 C -0.12 -0.82 5.39 -26.73 -0.14 -0.97 16 6 C -0.15 -1.04 9.73 37.16 0.36 -0.68 16 7 C -0.13 -1.20 4.36 -27.88 -0.12 -1.32 16 8 C 0.52 6.94 7.60 -10.98 -0.08 6.85 16 9 O -0.54 -8.75 14.42 5.56 0.08 -8.67 16 10 N -0.62 -8.10 3.33 -170.50 -0.57 -8.67 16 11 C 0.10 1.10 6.49 -3.06 -0.02 1.08 16 12 C -0.12 -1.65 6.37 -24.90 -0.16 -1.81 16 13 C -0.11 -1.68 3.05 -88.46 -0.27 -1.95 16 14 H 0.08 1.36 8.14 -51.92 -0.42 0.94 16 15 C 0.17 3.38 5.71 -4.05 -0.02 3.35 16 16 N -0.74 -18.47 5.55 -59.91 -0.33 -18.80 16 17 C -0.33 -9.36 9.99 -15.06 -0.15 -9.51 16 18 H 0.06 1.80 7.83 -52.49 -0.41 1.39 16 19 C -0.05 -1.33 5.50 -17.43 -0.10 -1.43 16 20 N -0.94 -29.05 13.70 55.49 0.76 -28.29 16 21 Si 1.08 25.89 29.92 -169.99 -5.09 20.80 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.30 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.30 -6.78 7.11 56.52 0.40 -6.37 16 25 C 0.11 1.66 6.38 -2.52 -0.02 1.64 16 26 H 0.10 1.09 7.83 -52.49 -0.41 0.68 16 27 H 0.09 0.86 8.06 -52.49 -0.42 0.44 16 28 H 0.10 0.92 8.06 -52.48 -0.42 0.49 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.42 7.38 -51.93 -0.38 0.04 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 1.12 7.91 -51.93 -0.41 0.70 16 39 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.02 0.47 7.97 -51.93 -0.41 0.05 16 42 H 0.37 9.22 6.50 -40.82 -0.27 8.96 16 43 H 0.25 7.64 6.77 -40.82 -0.28 7.37 16 44 H 0.08 1.17 8.04 -51.93 -0.42 0.76 16 45 H 0.07 0.99 8.04 -51.93 -0.42 0.57 16 LS Contribution 362.13 15.07 5.46 5.46 Total: -1.00 -32.86 362.13 -8.53 -41.39 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -8.09 Total: 5.23 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -0.75 Total: -8.45 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: -0.14 Total: -55.76 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.08 Total: -8.67 kcal Atomic # 14 Polarization: 25.89 SS G_CDS: -5.09 Total: 20.80 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.86 -8.53 -41.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266008657.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.293 kcal (2) G-P(sol) polarization free energy of solvation -32.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds