Wall clock time and date at job start Tue Mar 31 2020 03:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 119.99890 * 2 1 4 4 H 1.09000 * 109.47085 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47002 * 119.99869 * 3 2 1 6 6 C 1.53001 * 109.47318 * 294.99903 * 5 3 2 7 7 C 1.53009 * 109.46910 * 239.99544 * 3 2 1 8 8 C 1.50702 * 109.46551 * 65.00333 * 7 3 2 9 9 O 1.21273 * 120.00445 * 359.97438 * 8 7 3 10 10 N 1.34777 * 119.99376 * 179.97438 * 8 7 3 11 11 C 1.47025 * 125.65018 * 359.95742 * 10 8 7 12 12 C 1.54327 * 107.27126 * 181.09053 * 11 10 8 13 13 C 1.55155 * 102.94065 * 22.19595 * 12 11 10 14 14 H 1.09007 * 111.03795 * 82.58410 * 13 12 11 15 15 C 1.53001 * 111.00412 * 206.41899 * 13 12 11 16 16 N 1.46490 * 109.47264 * 287.19518 * 15 13 12 17 17 C 1.36935 * 120.00121 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00139 * 0.02562 * 17 16 15 19 19 C 1.38816 * 120.00401 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99569 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00172 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47055 * 180.02562 * 21 19 17 23 23 H 1.48505 * 109.46653 * 299.99639 * 21 19 17 24 24 H 1.48495 * 109.47483 * 60.00002 * 21 19 17 25 25 C 1.47425 * 125.64832 * 179.97438 * 10 8 7 26 26 H 1.07997 * 119.99841 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.00056 * 179.97438 * 1 2 3 28 28 H 1.08007 * 119.99892 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47160 * 54.99939 * 5 3 2 30 30 H 1.09001 * 109.46919 * 174.99897 * 5 3 2 31 31 H 1.08991 * 109.47017 * 60.00186 * 6 5 3 32 32 H 1.09003 * 109.47119 * 180.02562 * 6 5 3 33 33 H 1.08999 * 109.46716 * 299.99675 * 6 5 3 34 34 H 1.08991 * 109.46907 * 305.00195 * 7 3 2 35 35 H 1.09004 * 109.46741 * 185.00043 * 7 3 2 36 36 H 1.09000 * 109.88473 * 300.51310 * 11 10 8 37 37 H 1.09001 * 109.88122 * 61.52693 * 11 10 8 38 38 H 1.08996 * 110.72473 * 263.83287 * 12 11 10 39 39 H 1.09001 * 110.71926 * 140.55777 * 12 11 10 40 40 H 1.09003 * 109.46836 * 167.19226 * 15 13 12 41 41 H 1.08999 * 109.47071 * 47.20265 * 15 13 12 42 42 H 0.97000 * 120.00577 * 0.02562 * 16 15 13 43 43 H 0.97001 * 119.99885 * 359.97438 * 20 19 17 44 44 H 1.09001 * 110.36548 * 36.99406 * 25 10 8 45 45 H 1.09005 * 110.36296 * 274.67565 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9430 1.3861 1.2492 6 6 2.0564 1.4307 2.4953 7 6 2.9432 1.3861 -1.2493 8 6 2.0698 1.4299 -2.4766 9 8 0.8627 1.3990 -2.3633 10 7 2.6302 1.5036 -3.7001 11 6 4.0728 1.5488 -3.9806 12 6 4.2388 1.6575 -5.5110 13 6 2.8742 2.2373 -5.9683 14 1 2.8512 3.3210 -5.8531 15 6 2.5635 1.8354 -7.4115 16 7 3.4247 2.5904 -8.3248 17 6 3.3256 2.3964 -9.6767 18 1 2.6123 1.6871 -10.0697 19 6 4.1421 3.1114 -10.5423 20 7 5.0118 3.9755 -10.0634 21 14 4.0064 2.8472 -12.3865 22 1 4.9804 3.7238 -13.0851 23 1 4.3012 1.4272 -12.7061 24 1 2.6302 3.1801 -12.8344 25 6 1.8983 1.5525 -4.9789 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9354 0.0004 29 1 3.5905 0.5105 1.2952 30 1 3.5539 2.2878 1.2056 31 1 1.4455 0.5291 2.5390 32 1 2.6830 1.4889 3.3853 33 1 1.4090 2.3064 2.4494 34 1 3.5906 0.5104 -1.2951 35 1 3.5541 2.2878 -1.2056 36 1 4.5174 2.4184 -3.4967 37 1 4.5497 0.6384 -3.6175 38 1 4.4073 0.6748 -5.9515 39 1 5.0513 2.3388 -5.7634 40 1 1.5188 2.0543 -7.6326 41 1 2.7457 0.7683 -7.5387 42 1 4.0657 3.2272 -7.9720 43 1 5.0820 4.1129 -9.1058 44 1 0.9886 2.1436 -4.8729 45 1 1.6593 0.5444 -5.3179 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266008657.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:42 Heat of formation + Delta-G solvation = -41.543416 kcal Electronic energy + Delta-G solvation = -21829.629124 eV Core-core repulsion = 18653.305030 eV Total energy + Delta-G solvation = -3176.324094 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -41.23310 -39.22632 -37.50276 -36.70683 -34.09203 -32.62914 -32.05261 -31.03800 -30.14217 -27.12862 -25.59781 -24.35977 -23.82534 -22.52271 -21.47167 -20.66128 -20.02402 -19.38223 -18.06270 -17.59592 -16.64010 -16.48395 -16.05469 -15.77058 -15.55151 -15.18512 -15.09058 -14.87528 -14.75221 -14.22280 -13.97682 -13.81776 -13.68133 -13.09346 -12.98872 -12.84683 -12.77424 -12.58938 -12.29416 -12.11013 -12.06595 -11.90788 -11.86350 -11.72044 -11.67861 -11.37032 -11.27107 -10.93521 -10.90408 -10.04543 -9.65717 -9.12676 -8.40931 -5.34965 1.52355 1.59107 1.67759 1.68711 1.85326 1.96578 2.70686 3.29807 3.39295 3.58471 3.66592 3.79582 3.82964 3.90362 4.11004 4.24207 4.30880 4.35371 4.39408 4.44927 4.47301 4.53614 4.56577 4.64022 4.72575 4.76594 4.81216 4.92329 4.98938 5.00421 5.05661 5.06672 5.14259 5.18948 5.23001 5.31419 5.39567 5.46381 5.57343 5.81969 6.04711 6.49782 6.54115 7.08296 7.17494 7.98564 8.09223 9.11452 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.048701 B = 0.002680 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.796688 B =10444.905102 C =10803.736266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.148 4.148 3 C -0.044 4.044 4 H 0.059 0.941 5 C -0.110 4.110 6 C -0.152 4.152 7 C -0.122 4.122 8 C 0.518 3.482 9 O -0.575 6.575 10 N -0.622 5.622 11 C 0.106 3.894 12 C -0.118 4.118 13 C -0.098 4.098 14 H 0.074 0.926 15 C 0.170 3.830 16 N -0.753 5.753 17 C -0.337 4.337 18 H 0.064 0.936 19 C -0.102 4.102 20 N -0.973 5.973 21 Si 1.128 2.872 22 H -0.292 1.292 23 H -0.277 1.277 24 H -0.280 1.280 25 C 0.121 3.879 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.114 0.886 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.014 0.986 41 H 0.025 0.975 42 H 0.363 0.637 43 H 0.246 0.754 44 H 0.063 0.937 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.218 -7.608 24.161 25.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.166 4.166 3 C -0.063 4.063 4 H 0.077 0.923 5 C -0.147 4.147 6 C -0.210 4.210 7 C -0.161 4.161 8 C 0.308 3.692 9 O -0.454 6.454 10 N -0.356 5.356 11 C -0.016 4.016 12 C -0.156 4.156 13 C -0.118 4.118 14 H 0.093 0.907 15 C 0.043 3.957 16 N -0.398 5.398 17 C -0.469 4.469 18 H 0.082 0.918 19 C -0.294 4.294 20 N -0.621 5.621 21 Si 0.952 3.048 22 H -0.218 1.218 23 H -0.203 1.203 24 H -0.206 1.206 25 C -0.003 4.003 26 H 0.098 0.902 27 H 0.113 0.887 28 H 0.132 0.868 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.032 0.968 41 H 0.043 0.957 42 H 0.196 0.804 43 H 0.056 0.944 44 H 0.081 0.919 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.470 -7.354 22.770 23.973 hybrid contribution -0.799 -0.106 1.156 1.409 sum -2.269 -7.460 23.926 25.164 Atomic orbital electron populations 1.23701 0.96571 1.00902 1.00827 1.22859 0.95839 0.98051 0.99849 1.20172 0.96581 0.95794 0.93779 0.92294 1.21513 0.97536 1.03207 0.92485 1.21766 0.99920 1.01482 0.97790 1.21757 0.98124 1.06380 0.89845 1.21120 0.88852 0.75090 0.84102 1.90696 1.16652 1.51560 1.86492 1.48696 1.08658 1.72969 1.05282 1.22202 0.80048 1.03726 0.95593 1.22609 0.96628 1.01985 0.94419 1.22361 0.96152 0.99989 0.93283 0.90728 1.20573 0.92924 0.94345 0.87814 1.42477 1.45053 1.49347 1.02891 1.20379 1.19613 1.21931 0.84952 0.91766 1.27208 0.95791 0.96593 1.09789 1.70995 1.38907 1.38480 1.13742 0.82628 0.76071 0.76162 0.69914 1.21756 1.20265 1.20599 1.21978 0.95030 1.00328 0.82943 0.90212 0.88672 0.86796 0.90481 0.90567 0.93115 0.91687 0.93537 0.86573 0.86622 0.89317 0.88758 0.90756 0.90122 0.96790 0.95678 0.80449 0.94408 0.91882 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.95 13.22 67.78 0.90 -3.06 16 2 C -0.15 -2.77 6.76 25.64 0.17 -2.60 16 3 C -0.04 -0.73 1.82 -11.54 -0.02 -0.75 16 4 H 0.06 1.24 7.60 -2.39 -0.02 1.23 16 5 C -0.11 -1.24 5.39 30.59 0.16 -1.08 16 6 C -0.15 -1.85 9.73 71.98 0.70 -1.15 16 7 C -0.12 -1.86 4.36 29.85 0.13 -1.73 16 8 C 0.52 12.77 7.60 87.66 0.67 13.43 16 9 O -0.57 -18.68 14.42 -3.01 -0.04 -18.72 16 10 N -0.62 -15.02 3.33 -811.74 -2.70 -17.72 16 11 C 0.11 1.98 6.49 86.73 0.56 2.54 16 12 C -0.12 -3.02 6.37 31.78 0.20 -2.81 16 13 C -0.10 -3.04 3.05 -9.40 -0.03 -3.07 16 14 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 15 C 0.17 6.79 5.71 86.38 0.49 7.28 16 16 N -0.75 -37.77 5.55 -343.47 -1.90 -39.68 16 17 C -0.34 -19.09 9.99 84.03 0.84 -18.25 16 18 H 0.06 3.57 7.83 -2.91 -0.02 3.54 16 19 C -0.10 -5.94 5.50 84.86 0.47 -5.47 16 20 N -0.97 -60.36 13.70 21.65 0.30 -60.07 16 21 Si 1.13 51.75 29.92 68.60 2.05 53.80 16 22 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 23 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 24 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 25 C 0.12 3.44 6.38 86.86 0.55 4.00 16 26 H 0.08 1.93 7.83 -2.91 -0.02 1.91 16 27 H 0.09 1.85 8.06 -2.91 -0.02 1.83 16 28 H 0.11 1.81 8.06 -2.91 -0.02 1.79 16 29 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 0.68 7.38 -2.39 -0.02 0.67 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.12 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.07 1.97 7.91 -2.39 -0.02 1.95 16 39 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.03 1.00 7.97 -2.39 -0.02 0.99 16 42 H 0.36 18.55 6.50 -92.71 -0.60 17.95 16 43 H 0.25 15.04 6.77 -92.71 -0.63 14.41 16 44 H 0.06 1.96 8.04 -2.39 -0.02 1.94 16 45 H 0.07 1.93 8.04 -2.38 -0.02 1.91 16 Total: -1.00 -71.44 362.13 3.97 -67.47 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: 0.47 Total: 27.62 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: 5.80 Total: -12.72 kcal Atomic # 7 Polarization: -113.15 SS G_CDS: -4.31 Total: -117.46 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.04 Total: -18.72 kcal Atomic # 14 Polarization: 51.75 SS G_CDS: 2.05 Total: 53.80 kcal Total: -71.44 3.97 -67.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266008657.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.926 kcal (2) G-P(sol) polarization free energy of solvation -71.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds