Wall clock time and date at job start Tue Mar 31 2020 01:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47470 * 2 1 4 4 C 1.53000 * 109.47265 * 120.00305 * 2 1 3 5 5 H 1.09009 * 109.47141 * 299.99900 * 4 2 1 6 6 C 1.53005 * 109.47478 * 59.99520 * 4 2 1 7 7 N 1.46496 * 109.47059 * 175.00100 * 6 4 2 8 8 C 1.34774 * 119.99544 * 180.02562 * 7 6 4 9 9 O 1.21279 * 120.00472 * 0.02562 * 8 7 6 10 10 C 1.50706 * 120.00020 * 180.02562 * 8 7 6 11 11 C 1.52997 * 109.47238 * 180.02562 * 10 8 7 12 12 H 1.08995 * 110.34648 * 52.70972 * 11 10 8 13 13 C 1.51099 * 110.38551 * 290.29950 * 11 10 8 14 14 C 1.30524 * 111.10475 * 224.75110 * 13 11 10 15 15 C 1.51100 * 111.10334 * 0.02562 * 14 13 11 16 16 C 1.54629 * 104.72411 * 16.43929 * 15 14 13 17 17 N 1.46502 * 109.47308 * 179.97438 * 4 2 1 18 18 C 1.36941 * 119.99722 * 85.00020 * 17 4 2 19 19 H 1.08000 * 120.00218 * 359.97438 * 18 17 4 20 20 C 1.38812 * 119.99448 * 179.97438 * 18 17 4 21 21 N 1.31616 * 120.00339 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99560 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46708 * 90.00611 * 22 20 18 24 24 H 1.48504 * 109.47219 * 209.99934 * 22 20 18 25 25 H 1.48499 * 109.47517 * 330.00400 * 22 20 18 26 26 H 1.09006 * 109.47237 * 300.00134 * 1 2 3 27 27 H 1.09003 * 109.47419 * 59.99665 * 1 2 3 28 28 H 1.09000 * 109.47338 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47237 * 239.99866 * 2 1 3 30 30 H 1.08993 * 109.47403 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.47078 * 300.00495 * 3 2 1 32 32 H 1.09001 * 109.46463 * 60.00173 * 3 2 1 33 33 H 1.08996 * 109.46524 * 55.00206 * 6 4 2 34 34 H 1.08992 * 109.46876 * 295.00539 * 6 4 2 35 35 H 0.96994 * 120.00700 * 0.02562 * 7 6 4 36 36 H 1.09001 * 109.46953 * 299.99667 * 10 8 7 37 37 H 1.09000 * 109.47318 * 59.99264 * 10 8 7 38 38 H 1.07999 * 124.45102 * 44.75669 * 13 11 10 39 39 H 1.08003 * 124.45031 * 179.97438 * 14 13 11 40 40 H 1.08996 * 110.38768 * 257.62264 * 15 14 13 41 41 H 1.09005 * 110.47756 * 135.29575 * 15 14 13 42 42 H 1.09009 * 111.03536 * 217.33457 * 16 15 14 43 43 H 1.08996 * 111.04062 * 93.40135 * 16 15 14 44 44 H 0.96995 * 120.00272 * 264.99607 * 17 4 2 45 45 H 0.97006 * 119.99758 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2075 2.1393 6 6 1.5299 -2.1638 1.2493 7 7 2.1141 -2.8883 2.3806 8 6 1.8059 -4.1848 2.5821 9 8 1.0454 -4.7518 1.8265 10 6 2.4064 -4.9299 3.7463 11 6 1.8974 -6.3728 3.7455 12 1 2.0653 -6.8333 2.7720 13 6 0.4301 -6.4135 4.1037 14 6 0.1833 -7.3601 4.9678 15 6 1.4451 -8.1081 5.3304 16 6 2.5959 -7.1903 4.8569 17 7 3.5050 -0.7218 1.2489 18 6 4.1901 0.3528 1.7499 19 1 3.6505 1.2009 2.1448 20 6 5.5783 0.3520 1.7500 21 7 6.2359 -0.6813 1.2683 22 14 6.5129 1.8183 2.4328 23 1 6.7602 1.6159 3.8831 24 1 7.8107 1.9520 1.7234 25 1 5.7111 3.0524 2.2348 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9562 0.8900 33 1 1.8183 -2.6511 0.3179 34 1 0.4437 -2.1651 1.3388 35 1 2.7227 -2.4350 2.9848 36 1 3.4928 -4.9283 3.6573 37 1 2.1174 -4.4428 4.6775 38 1 -0.3166 -5.7469 3.6979 39 1 -0.7942 -7.5793 5.3713 40 1 1.4828 -9.0644 4.8088 41 1 1.5009 -8.2618 6.4082 42 1 3.4216 -7.7754 4.4517 43 1 2.9371 -6.5423 5.6642 44 1 3.9897 -1.4834 0.8939 45 1 7.2059 -0.6819 1.2688 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271808253.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:21 Heat of formation + Delta-G solvation = -31.798643 kcal Electronic energy + Delta-G solvation = -22274.832993 eV Core-core repulsion = 19098.931464 eV Total energy + Delta-G solvation = -3175.901529 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.76724 -38.29113 -37.10355 -33.76038 -33.13122 -31.56988 -30.34294 -28.96511 -28.07686 -26.18441 -25.27929 -23.54568 -21.81164 -20.54108 -20.07662 -19.27902 -18.61130 -17.34861 -16.56644 -15.89616 -15.76333 -15.32008 -14.87717 -14.66142 -13.99414 -13.62160 -13.52733 -13.38356 -12.95159 -12.56297 -12.17222 -12.04190 -11.92781 -11.85232 -11.82180 -11.63067 -11.28997 -11.10976 -11.04551 -10.97241 -10.82171 -10.73382 -10.62853 -10.30932 -10.10697 -9.95661 -9.56104 -9.40667 -8.93100 -8.89169 -8.54220 -7.04382 -5.83742 -3.12828 2.31157 3.04121 3.37676 3.44353 3.45577 3.65786 4.52251 4.60027 4.60935 4.88845 5.12152 5.26964 5.34196 5.37993 5.43982 5.52772 5.53739 5.54684 5.63406 5.66248 5.75864 5.78167 5.85948 5.92879 5.94845 6.02098 6.14856 6.19671 6.24939 6.28400 6.37590 6.46665 6.54270 6.57239 6.63268 6.69874 6.92153 6.98508 7.07666 7.29185 7.64906 8.01652 8.33672 8.65964 9.45721 10.00798 10.36832 11.38066 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016322 B = 0.004180 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.086669 B = 6696.721537 C = 8086.274344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.139 4.139 4 C 0.170 3.830 5 H 0.052 0.948 6 C 0.114 3.886 7 N -0.714 5.714 8 C 0.509 3.491 9 O -0.555 6.555 10 C -0.134 4.134 11 C -0.053 4.053 12 H 0.090 0.910 13 C -0.134 4.134 14 C -0.189 4.189 15 C -0.098 4.098 16 C -0.123 4.123 17 N -0.721 5.721 18 C -0.237 4.237 19 H 0.073 0.927 20 C -0.010 4.010 21 N -0.929 5.929 22 Si 0.902 3.098 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.031 0.969 32 H 0.040 0.960 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.410 0.590 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.745 -8.609 5.906 14.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.196 4.196 4 C 0.060 3.940 5 H 0.070 0.930 6 C -0.011 4.011 7 N -0.366 5.366 8 C 0.295 3.705 9 O -0.434 6.434 10 C -0.174 4.174 11 C -0.072 4.072 12 H 0.108 0.892 13 C -0.152 4.152 14 C -0.207 4.207 15 C -0.135 4.135 16 C -0.161 4.161 17 N -0.363 5.363 18 C -0.368 4.368 19 H 0.091 0.909 20 C -0.207 4.207 21 N -0.577 5.577 22 Si 0.733 3.267 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.208 1.208 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.246 0.754 36 H 0.115 0.885 37 H 0.110 0.890 38 H 0.142 0.858 39 H 0.137 0.863 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.191 -8.836 5.446 14.546 hybrid contribution 0.987 0.933 0.375 1.409 sum -9.204 -7.903 5.821 13.455 Atomic orbital electron populations 1.21939 0.96891 1.00942 1.00890 1.21728 0.93515 0.97773 1.00100 1.21819 1.04204 0.94654 0.98973 1.20545 0.86350 0.91248 0.95901 0.92963 1.21696 0.97152 0.93176 0.89038 1.46037 1.48599 1.11091 1.30842 1.20614 0.81411 0.82057 0.86371 1.90649 1.36904 1.67941 1.47919 1.21706 1.02220 0.95691 0.97775 1.20815 0.92703 0.93933 0.99715 0.89195 1.23324 0.97101 0.98222 0.96578 1.23209 0.98539 0.98492 1.00435 1.21314 0.92818 0.98520 1.00811 1.22575 0.97467 0.97963 0.98083 1.42460 0.98759 1.21211 1.73824 1.19202 0.88778 0.96399 1.32397 0.90943 1.24721 0.96461 0.97697 1.01792 1.69661 1.06909 1.29855 1.51309 0.86274 0.79616 0.82335 0.78455 1.21778 1.21877 1.20752 0.93221 0.93592 0.93054 0.91933 0.89503 0.95013 0.94092 0.92094 0.91805 0.75434 0.88550 0.89048 0.85838 0.86284 0.91091 0.91551 0.90859 0.90837 0.78103 0.93501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 8.84 37.15 0.33 -1.78 16 2 C -0.11 -1.86 2.69 -90.62 -0.24 -2.11 16 3 C -0.14 -2.50 8.26 37.16 0.31 -2.19 16 4 C 0.17 3.10 2.18 -67.93 -0.15 2.95 16 5 H 0.05 0.98 8.08 -51.92 -0.42 0.56 16 6 C 0.11 1.93 4.73 -4.04 -0.02 1.92 16 7 N -0.71 -11.71 5.39 -60.30 -0.32 -12.03 16 8 C 0.51 8.19 7.63 -10.98 -0.08 8.10 16 9 O -0.56 -10.45 14.92 5.56 0.08 -10.37 16 10 C -0.13 -1.69 5.09 -27.88 -0.14 -1.83 16 11 C -0.05 -0.65 2.52 -90.71 -0.23 -0.88 16 12 H 0.09 1.24 7.90 -51.93 -0.41 0.83 16 13 C -0.13 -1.68 9.26 -35.70 -0.33 -2.01 16 14 C -0.19 -2.03 10.77 -35.70 -0.38 -2.41 16 15 C -0.10 -0.92 6.81 -26.83 -0.18 -1.10 16 16 C -0.12 -1.22 6.71 -25.01 -0.17 -1.39 16 17 N -0.72 -16.16 4.44 -53.42 -0.24 -16.40 16 18 C -0.24 -5.91 7.57 -15.06 -0.11 -6.02 16 19 H 0.07 1.78 7.39 -52.49 -0.39 1.39 16 20 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 21 N -0.93 -26.39 13.06 55.49 0.72 -25.67 16 22 Si 0.90 21.24 29.55 -169.99 -5.02 16.21 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.69 6.55 -51.93 -0.34 0.35 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.09 1.85 6.01 -51.93 -0.31 1.54 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.06 1.03 6.71 -51.93 -0.35 0.68 16 35 H 0.41 6.77 8.14 -40.82 -0.33 6.44 16 36 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.09 1.03 8.13 -51.93 -0.42 0.60 16 38 H 0.12 1.69 7.58 -52.49 -0.40 1.29 16 39 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 43 H 0.07 0.68 7.91 -51.93 -0.41 0.27 16 44 H 0.38 9.50 7.80 -40.82 -0.32 9.18 16 45 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 357.23 15.07 5.38 5.38 Total: -1.00 -28.32 357.23 -8.79 -37.10 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: -7.89 Total: 14.90 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -1.51 Total: -9.12 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 0.16 Total: -54.10 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.08 Total: -10.37 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.32 -8.79 -37.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271808253.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.302 kcal (2) G-P(sol) polarization free energy of solvation -28.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds