Wall clock time and date at job start Tue Mar 31 2020 01:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47470 * 2 1 4 4 C 1.53000 * 109.47265 * 120.00305 * 2 1 3 5 5 H 1.09009 * 109.47141 * 299.99900 * 4 2 1 6 6 C 1.53005 * 109.47478 * 59.99520 * 4 2 1 7 7 N 1.46496 * 109.47059 * 175.00100 * 6 4 2 8 8 C 1.34774 * 119.99544 * 180.02562 * 7 6 4 9 9 O 1.21279 * 120.00472 * 0.02562 * 8 7 6 10 10 C 1.50706 * 120.00020 * 180.02562 * 8 7 6 11 11 C 1.52997 * 109.47238 * 180.02562 * 10 8 7 12 12 H 1.08995 * 110.34648 * 52.70972 * 11 10 8 13 13 C 1.51099 * 110.38551 * 290.29950 * 11 10 8 14 14 C 1.30524 * 111.10475 * 224.75110 * 13 11 10 15 15 C 1.51100 * 111.10334 * 0.02562 * 14 13 11 16 16 C 1.54629 * 104.72411 * 16.43929 * 15 14 13 17 17 N 1.46502 * 109.47308 * 179.97438 * 4 2 1 18 18 C 1.36941 * 119.99722 * 85.00020 * 17 4 2 19 19 H 1.08000 * 120.00218 * 359.97438 * 18 17 4 20 20 C 1.38812 * 119.99448 * 179.97438 * 18 17 4 21 21 N 1.31616 * 120.00339 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99560 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46708 * 90.00611 * 22 20 18 24 24 H 1.48504 * 109.47219 * 209.99934 * 22 20 18 25 25 H 1.48499 * 109.47517 * 330.00400 * 22 20 18 26 26 H 1.09006 * 109.47237 * 300.00134 * 1 2 3 27 27 H 1.09003 * 109.47419 * 59.99665 * 1 2 3 28 28 H 1.09000 * 109.47338 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47237 * 239.99866 * 2 1 3 30 30 H 1.08993 * 109.47403 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.47078 * 300.00495 * 3 2 1 32 32 H 1.09001 * 109.46463 * 60.00173 * 3 2 1 33 33 H 1.08996 * 109.46524 * 55.00206 * 6 4 2 34 34 H 1.08992 * 109.46876 * 295.00539 * 6 4 2 35 35 H 0.96994 * 120.00700 * 0.02562 * 7 6 4 36 36 H 1.09001 * 109.46953 * 299.99667 * 10 8 7 37 37 H 1.09000 * 109.47318 * 59.99264 * 10 8 7 38 38 H 1.07999 * 124.45102 * 44.75669 * 13 11 10 39 39 H 1.08003 * 124.45031 * 179.97438 * 14 13 11 40 40 H 1.08996 * 110.38768 * 257.62264 * 15 14 13 41 41 H 1.09005 * 110.47756 * 135.29575 * 15 14 13 42 42 H 1.09009 * 111.03536 * 217.33457 * 16 15 14 43 43 H 1.08996 * 111.04062 * 93.40135 * 16 15 14 44 44 H 0.96995 * 120.00272 * 264.99607 * 17 4 2 45 45 H 0.97006 * 119.99758 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2075 2.1393 6 6 1.5299 -2.1638 1.2493 7 7 2.1141 -2.8883 2.3806 8 6 1.8059 -4.1848 2.5821 9 8 1.0454 -4.7518 1.8265 10 6 2.4064 -4.9299 3.7463 11 6 1.8974 -6.3728 3.7455 12 1 2.0653 -6.8333 2.7720 13 6 0.4301 -6.4135 4.1037 14 6 0.1833 -7.3601 4.9678 15 6 1.4451 -8.1081 5.3304 16 6 2.5959 -7.1903 4.8569 17 7 3.5050 -0.7218 1.2489 18 6 4.1901 0.3528 1.7499 19 1 3.6505 1.2009 2.1448 20 6 5.5783 0.3520 1.7500 21 7 6.2359 -0.6813 1.2683 22 14 6.5129 1.8183 2.4328 23 1 6.7602 1.6159 3.8831 24 1 7.8107 1.9520 1.7234 25 1 5.7111 3.0524 2.2348 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9562 0.8900 33 1 1.8183 -2.6511 0.3179 34 1 0.4437 -2.1651 1.3388 35 1 2.7227 -2.4350 2.9848 36 1 3.4928 -4.9283 3.6573 37 1 2.1174 -4.4428 4.6775 38 1 -0.3166 -5.7469 3.6979 39 1 -0.7942 -7.5793 5.3713 40 1 1.4828 -9.0644 4.8088 41 1 1.5009 -8.2618 6.4082 42 1 3.4216 -7.7754 4.4517 43 1 2.9371 -6.5423 5.6642 44 1 3.9897 -1.4834 0.8939 45 1 7.2059 -0.6819 1.2688 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271808253.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:21 Heat of formation + Delta-G solvation = -48.115311 kcal Electronic energy + Delta-G solvation = -22275.540537 eV Core-core repulsion = 19098.931464 eV Total energy + Delta-G solvation = -3176.609073 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.97797 -39.38998 -38.52759 -35.19096 -34.90443 -32.65168 -32.05729 -29.82975 -29.51266 -27.50869 -26.49170 -25.23402 -23.27246 -21.56220 -21.25124 -20.68846 -19.60314 -19.13579 -17.83389 -17.15717 -16.94818 -16.73927 -16.19204 -15.84138 -15.58794 -15.16316 -14.89649 -14.83846 -14.33723 -13.90484 -13.51149 -13.41649 -12.93867 -12.89465 -12.84692 -12.74693 -12.68583 -12.65407 -12.43282 -12.27750 -12.07144 -12.01261 -11.97458 -11.75852 -11.65962 -11.44327 -11.28042 -10.88468 -10.67232 -9.93457 -9.76467 -8.94789 -7.86512 -5.13560 1.41787 1.50817 1.52606 1.59226 1.75072 2.38460 2.60931 3.46734 3.67823 3.76205 3.87343 3.94608 4.01344 4.07957 4.29955 4.32574 4.37660 4.47017 4.54007 4.59376 4.66144 4.69258 4.79053 4.79777 4.92410 4.97963 5.00240 5.02333 5.07598 5.12332 5.15507 5.26646 5.31336 5.33850 5.43727 5.57130 5.62655 5.65326 5.70771 5.77566 6.03190 6.33585 6.68331 7.34703 7.41709 8.12873 8.38432 9.36367 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016322 B = 0.004180 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.086669 B = 6696.721537 C = 8086.274344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.134 4.134 4 C 0.173 3.827 5 H 0.056 0.944 6 C 0.123 3.877 7 N -0.715 5.715 8 C 0.506 3.494 9 O -0.585 6.585 10 C -0.127 4.127 11 C -0.053 4.053 12 H 0.067 0.933 13 C -0.165 4.165 14 C -0.171 4.171 15 C -0.098 4.098 16 C -0.119 4.119 17 N -0.727 5.727 18 C -0.215 4.215 19 H 0.079 0.921 20 C -0.070 4.070 21 N -0.967 5.967 22 Si 0.958 3.042 23 H -0.289 1.289 24 H -0.305 1.305 25 H -0.272 1.272 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.410 0.590 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.134 0.866 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.372 0.628 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.001 -8.595 7.351 15.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.128 4.128 3 C -0.192 4.192 4 C 0.064 3.936 5 H 0.074 0.926 6 C -0.002 4.002 7 N -0.366 5.366 8 C 0.294 3.706 9 O -0.466 6.466 10 C -0.167 4.167 11 C -0.072 4.072 12 H 0.085 0.915 13 C -0.184 4.184 14 C -0.189 4.189 15 C -0.135 4.135 16 C -0.156 4.156 17 N -0.367 5.367 18 C -0.347 4.347 19 H 0.097 0.903 20 C -0.262 4.262 21 N -0.619 5.619 22 Si 0.789 3.211 23 H -0.216 1.216 24 H -0.232 1.232 25 H -0.197 1.197 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.095 0.905 35 H 0.246 0.754 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.122 0.878 39 H 0.152 0.848 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.204 0.796 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -11.497 -8.798 6.905 16.039 hybrid contribution 1.248 0.909 -0.100 1.548 sum -10.249 -7.888 6.805 14.614 Atomic orbital electron populations 1.21845 0.94013 1.01782 1.02158 1.21630 0.95869 0.96818 0.98520 1.21731 1.01683 0.95487 1.00281 1.20670 0.83967 0.92294 0.96629 0.92604 1.21554 0.97794 0.92126 0.88697 1.46070 1.48568 1.11406 1.30569 1.21236 0.80791 0.81745 0.86830 1.90631 1.38311 1.68420 1.49226 1.21742 1.02340 0.95764 0.96816 1.20797 0.93106 0.93699 0.99597 0.91511 1.23226 0.96966 0.99679 0.98480 1.23512 0.99829 0.97005 0.98563 1.21382 0.91617 0.98415 1.02098 1.22589 0.97757 0.97910 0.97394 1.42564 1.00475 1.20121 1.73493 1.19470 0.88818 0.96534 1.29885 0.90346 1.25339 0.97532 0.99857 1.03517 1.69806 1.06372 1.31757 1.53928 0.85366 0.77944 0.80263 0.77551 1.21635 1.23224 1.19738 0.92192 0.92104 0.92467 0.93305 0.93195 0.93077 0.93443 0.93780 0.90452 0.75419 0.87751 0.87212 0.87808 0.84788 0.90286 0.89620 0.89976 0.89799 0.79604 0.94438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 8.84 71.98 0.64 -2.97 16 2 C -0.11 -3.51 2.69 -10.79 -0.03 -3.54 16 3 C -0.13 -4.64 8.26 71.98 0.59 -4.05 16 4 C 0.17 6.20 2.18 44.99 0.10 6.29 16 5 H 0.06 1.99 8.08 -2.38 -0.02 1.97 16 6 C 0.12 4.14 4.73 86.38 0.41 4.54 16 7 N -0.72 -23.35 5.39 -463.07 -2.49 -25.85 16 8 C 0.51 16.31 7.63 87.66 0.67 16.98 16 9 O -0.58 -22.41 14.92 -3.02 -0.05 -22.46 16 10 C -0.13 -3.12 5.09 29.85 0.15 -2.97 16 11 C -0.05 -1.28 2.52 -10.85 -0.03 -1.30 16 12 H 0.07 1.88 7.90 -2.39 -0.02 1.86 16 13 C -0.17 -4.06 9.26 26.26 0.24 -3.82 16 14 C -0.17 -3.36 10.77 26.26 0.28 -3.08 16 15 C -0.10 -1.59 6.81 30.53 0.21 -1.38 16 16 C -0.12 -2.11 6.71 31.71 0.21 -1.90 16 17 N -0.73 -32.72 4.44 -322.92 -1.43 -34.15 16 18 C -0.22 -10.70 7.57 84.03 0.64 -10.06 16 19 H 0.08 3.77 7.39 -2.91 -0.02 3.74 16 20 C -0.07 -3.75 5.50 84.86 0.47 -3.29 16 21 N -0.97 -56.10 13.06 21.65 0.28 -55.82 16 22 Si 0.96 43.94 29.55 68.60 2.03 45.97 16 23 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 24 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 26 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.06 1.41 6.55 -2.39 -0.02 1.40 16 29 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.05 2.09 6.01 -2.39 -0.01 2.08 16 31 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.08 2.41 6.71 -2.39 -0.02 2.39 16 35 H 0.41 13.43 8.14 -92.71 -0.75 12.68 16 36 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.11 2.30 8.13 -2.39 -0.02 2.28 16 38 H 0.10 2.92 7.58 -2.91 -0.02 2.90 16 39 H 0.13 2.18 8.06 -2.91 -0.02 2.15 16 40 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 42 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 43 H 0.08 1.32 7.91 -2.39 -0.02 1.30 16 44 H 0.37 18.74 7.80 -92.71 -0.72 18.02 16 45 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 Total: -1.00 -61.26 357.23 2.38 -58.88 By element: Atomic # 1 Polarization: 44.48 SS G_CDS: -0.51 Total: 43.96 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: 4.55 Total: -10.54 kcal Atomic # 7 Polarization: -112.18 SS G_CDS: -3.65 Total: -115.82 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.05 Total: -22.46 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -61.26 2.38 -58.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271808253.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.769 kcal (2) G-P(sol) polarization free energy of solvation -61.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds