Wall clock time and date at job start Tue Mar 31 2020 01:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47006 * 2 1 4 4 C 1.53001 * 109.47339 * 119.99640 * 2 1 3 5 5 H 1.09002 * 109.46918 * 300.00579 * 4 2 1 6 6 C 1.52998 * 109.47516 * 180.02562 * 4 2 1 7 7 N 1.46505 * 109.47271 * 185.00401 * 6 4 2 8 8 C 1.34775 * 119.99780 * 179.97438 * 7 6 4 9 9 O 1.21285 * 119.99961 * 0.02562 * 8 7 6 10 10 C 1.50694 * 119.99848 * 179.97438 * 8 7 6 11 11 C 1.52995 * 109.47526 * 180.02562 * 10 8 7 12 12 H 1.09005 * 110.34285 * 307.29383 * 11 10 8 13 13 C 1.51100 * 110.38835 * 69.69591 * 11 10 8 14 14 C 1.30724 * 111.14096 * 135.34907 * 13 11 10 15 15 C 1.51106 * 110.98690 * 359.84700 * 14 13 11 16 16 C 1.54630 * 110.39121 * 185.00436 * 11 10 8 17 17 N 1.46499 * 109.47135 * 59.99789 * 4 2 1 18 18 C 1.36934 * 120.00680 * 275.00489 * 17 4 2 19 19 H 1.07998 * 119.99558 * 359.97438 * 18 17 4 20 20 C 1.38813 * 120.00285 * 179.97438 * 18 17 4 21 21 N 1.31612 * 120.00075 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99701 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47461 * 89.99736 * 22 20 18 24 24 H 1.48506 * 109.46549 * 209.99918 * 22 20 18 25 25 H 1.48500 * 109.47418 * 329.99244 * 22 20 18 26 26 H 1.09002 * 109.47588 * 300.00191 * 1 2 3 27 27 H 1.09001 * 109.47566 * 60.00578 * 1 2 3 28 28 H 1.08999 * 109.47207 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47588 * 239.99809 * 2 1 3 30 30 H 1.08995 * 109.47282 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47035 * 299.99555 * 3 2 1 32 32 H 1.08997 * 109.47186 * 59.99954 * 3 2 1 33 33 H 1.08994 * 109.47135 * 64.99678 * 6 4 2 34 34 H 1.09005 * 109.46685 * 305.00041 * 6 4 2 35 35 H 0.96995 * 119.99627 * 359.97438 * 7 6 4 36 36 H 1.09004 * 109.47061 * 60.00329 * 10 8 7 37 37 H 1.09002 * 109.47721 * 300.00762 * 10 8 7 38 38 H 1.08005 * 124.44548 * 315.24094 * 13 11 10 39 39 H 1.07999 * 124.56221 * 179.97438 * 14 13 11 40 40 H 1.09002 * 110.38747 * 224.83749 * 15 14 13 41 41 H 1.09000 * 110.38500 * 102.57217 * 15 14 13 42 42 H 1.09003 * 111.03946 * 98.52311 * 16 11 10 43 43 H 1.09001 * 111.07005 * 334.60155 * 16 11 10 44 44 H 0.97009 * 119.99697 * 94.99862 * 17 4 2 45 45 H 0.96994 * 120.00493 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1392 6 6 3.5700 -0.7206 1.2496 7 7 4.0584 -1.5129 2.3811 8 6 5.3834 -1.6541 2.5827 9 8 6.1715 -1.1249 1.8278 10 6 5.8858 -2.4685 3.7469 11 6 7.4158 -2.4681 3.7472 12 1 7.7950 -2.7791 2.7737 13 6 7.9417 -1.0979 4.1062 14 6 8.9189 -1.1796 4.9708 15 6 9.2022 -2.6190 5.3329 16 6 7.9545 -3.3994 4.8578 17 7 1.5517 -2.1024 1.2494 18 6 0.3101 -2.3897 1.7505 19 1 -0.3089 -1.5981 2.1461 20 6 -0.1527 -3.6984 1.7501 21 7 0.6015 -4.6630 1.2676 22 14 -1.8467 -4.0901 2.4331 23 1 -2.8530 -3.9963 1.3452 24 1 -1.8488 -5.4659 2.9923 25 1 -2.1848 -3.1197 3.5051 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.9329 0.3032 1.3393 34 1 3.9336 -1.1548 0.3182 35 1 3.4280 -1.9357 2.9850 36 1 5.5225 -3.4923 3.6577 37 1 5.5225 -2.0339 4.6782 38 1 7.5616 -0.1720 3.7004 39 1 9.4519 -0.3316 5.3748 40 1 9.3267 -2.7219 6.4109 41 1 10.0923 -2.9732 4.8130 42 1 8.2326 -4.3722 4.4521 43 1 7.2297 -3.5071 5.6647 44 1 2.1078 -2.8135 0.8944 45 1 0.2780 -5.5774 1.2670 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271808257.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:32 Heat of formation + Delta-G solvation = -32.002499 kcal Electronic energy + Delta-G solvation = -22273.300554 eV Core-core repulsion = 19097.390185 eV Total energy + Delta-G solvation = -3175.910369 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.76256 -38.28163 -37.10260 -33.76003 -33.13207 -31.56889 -30.34370 -28.95253 -28.07840 -26.18628 -25.28210 -23.54660 -21.81234 -20.53746 -20.07664 -19.28039 -18.61500 -17.34924 -16.56664 -15.89452 -15.76098 -15.32030 -14.87655 -14.66149 -13.99587 -13.62070 -13.52874 -13.38626 -12.95167 -12.56346 -12.17240 -12.04330 -11.92814 -11.84887 -11.82047 -11.63167 -11.29075 -11.11080 -11.04332 -10.96148 -10.85002 -10.73546 -10.62468 -10.29443 -10.11787 -9.95496 -9.56242 -9.40828 -8.93081 -8.88184 -8.54249 -7.04423 -5.83726 -3.12813 2.30404 3.04058 3.37938 3.44124 3.45468 3.65741 4.52248 4.59963 4.61125 4.88697 5.12071 5.26963 5.34017 5.37974 5.43874 5.52709 5.53789 5.54671 5.63333 5.66249 5.75806 5.78167 5.85898 5.92855 5.94851 6.02049 6.14803 6.19521 6.24915 6.28303 6.37491 6.46587 6.54121 6.56930 6.63146 6.69733 6.91850 6.98423 7.07559 7.28681 7.64920 8.01645 8.33680 8.65921 9.45698 10.00798 10.36826 11.38120 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016326 B = 0.004179 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.636896 B = 6699.264967 C = 8088.004936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.170 3.830 5 H 0.052 0.948 6 C 0.114 3.886 7 N -0.714 5.714 8 C 0.509 3.491 9 O -0.555 6.555 10 C -0.134 4.134 11 C -0.053 4.053 12 H 0.090 0.910 13 C -0.134 4.134 14 C -0.189 4.189 15 C -0.098 4.098 16 C -0.123 4.123 17 N -0.721 5.721 18 C -0.237 4.237 19 H 0.073 0.927 20 C -0.010 4.010 21 N -0.929 5.929 22 Si 0.902 3.098 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 H 0.040 0.960 27 H 0.031 0.969 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.410 0.590 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.387 6.311 5.944 14.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.131 4.131 3 C -0.207 4.207 4 C 0.060 3.940 5 H 0.070 0.930 6 C -0.011 4.011 7 N -0.366 5.366 8 C 0.295 3.705 9 O -0.434 6.434 10 C -0.174 4.174 11 C -0.072 4.072 12 H 0.108 0.892 13 C -0.152 4.152 14 C -0.207 4.207 15 C -0.135 4.135 16 C -0.161 4.161 17 N -0.362 5.362 18 C -0.368 4.368 19 H 0.091 0.909 20 C -0.207 4.207 21 N -0.577 5.577 22 Si 0.733 3.267 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.208 1.208 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.105 0.895 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.246 0.754 36 H 0.115 0.885 37 H 0.110 0.890 38 H 0.142 0.858 39 H 0.138 0.862 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.757 6.653 5.502 14.587 hybrid contribution -1.218 -0.616 0.352 1.410 sum 10.539 6.038 5.854 13.483 Atomic orbital electron populations 1.21820 0.94980 1.03879 0.98982 1.21728 0.96879 0.94409 1.00104 1.21938 1.00488 0.97347 1.00890 1.20541 0.89473 0.88133 0.95900 0.92962 1.21697 0.95526 0.94799 0.89035 1.46039 1.06859 1.52821 1.30849 1.20612 0.82420 0.81056 0.86363 1.90651 1.55515 1.49300 1.47953 1.21702 0.96411 1.01500 0.97774 1.20807 0.93267 0.93360 0.99717 0.89196 1.23379 0.97044 0.98241 0.96569 1.23265 0.99639 0.97359 1.00446 1.21316 0.98256 0.93094 1.00802 1.22570 0.97211 0.98210 0.98086 1.42460 1.18061 1.01893 1.73835 1.19199 0.92811 0.92360 1.32397 0.90947 1.24719 0.98257 0.95876 1.01816 1.69654 1.36810 0.99893 1.51381 0.86273 0.84456 0.77368 0.78581 1.21768 1.21869 1.20779 0.94071 0.95010 0.89518 0.91933 0.93055 0.93592 0.93218 0.91800 0.92096 0.75432 0.88543 0.89048 0.85841 0.86242 0.91565 0.91096 0.90857 0.90842 0.78107 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.26 37.15 0.31 -2.19 16 2 C -0.11 -1.86 2.69 -90.62 -0.24 -2.11 16 3 C -0.15 -2.10 8.84 37.16 0.33 -1.77 16 4 C 0.17 3.10 2.18 -67.93 -0.15 2.95 16 5 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 6 C 0.11 1.93 4.73 -4.04 -0.02 1.92 16 7 N -0.71 -11.70 5.39 -60.29 -0.32 -12.03 16 8 C 0.51 8.18 7.63 -10.99 -0.08 8.10 16 9 O -0.56 -10.45 14.92 5.55 0.08 -10.37 16 10 C -0.13 -1.69 5.09 -27.89 -0.14 -1.83 16 11 C -0.05 -0.65 2.52 -90.72 -0.23 -0.88 16 12 H 0.09 1.24 7.90 -51.93 -0.41 0.83 16 13 C -0.13 -1.68 9.27 -35.75 -0.33 -2.01 16 14 C -0.19 -2.03 10.79 -35.75 -0.39 -2.41 16 15 C -0.10 -0.92 6.80 -26.82 -0.18 -1.10 16 16 C -0.12 -1.22 6.71 -25.01 -0.17 -1.38 16 17 N -0.72 -16.16 4.44 -53.43 -0.24 -16.40 16 18 C -0.24 -5.91 7.57 -15.06 -0.11 -6.02 16 19 H 0.07 1.78 7.40 -52.49 -0.39 1.39 16 20 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 21 N -0.93 -26.39 13.06 55.49 0.72 -25.67 16 22 Si 0.90 21.24 29.55 -169.99 -5.02 16.22 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 1.84 6.01 -51.93 -0.31 1.53 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.05 0.69 6.55 -51.93 -0.34 0.35 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 1.03 6.71 -51.93 -0.35 0.68 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.41 6.77 8.14 -40.82 -0.33 6.43 16 36 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.09 1.02 8.13 -51.93 -0.42 0.60 16 38 H 0.12 1.69 7.58 -52.48 -0.40 1.29 16 39 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.68 7.91 -51.93 -0.41 0.27 16 44 H 0.38 9.50 7.80 -40.82 -0.32 9.18 16 45 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 357.26 15.07 5.38 5.38 Total: -1.00 -28.33 357.26 -8.79 -37.11 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: -7.89 Total: 14.86 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -1.51 Total: -9.12 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 0.16 Total: -54.10 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.08 Total: -10.37 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.33 -8.79 -37.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271808257.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.111 kcal (2) G-P(sol) polarization free energy of solvation -28.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds