Wall clock time and date at job start Tue Mar 31 2020 01:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47006 * 2 1 4 4 C 1.53001 * 109.47339 * 119.99640 * 2 1 3 5 5 H 1.09002 * 109.46918 * 300.00579 * 4 2 1 6 6 C 1.52998 * 109.47516 * 180.02562 * 4 2 1 7 7 N 1.46505 * 109.47271 * 185.00401 * 6 4 2 8 8 C 1.34775 * 119.99780 * 179.97438 * 7 6 4 9 9 O 1.21285 * 119.99961 * 0.02562 * 8 7 6 10 10 C 1.50694 * 119.99848 * 179.97438 * 8 7 6 11 11 C 1.52995 * 109.47526 * 180.02562 * 10 8 7 12 12 H 1.09005 * 110.34285 * 307.29383 * 11 10 8 13 13 C 1.51100 * 110.38835 * 69.69591 * 11 10 8 14 14 C 1.30724 * 111.14096 * 135.34907 * 13 11 10 15 15 C 1.51106 * 110.98690 * 359.84700 * 14 13 11 16 16 C 1.54630 * 110.39121 * 185.00436 * 11 10 8 17 17 N 1.46499 * 109.47135 * 59.99789 * 4 2 1 18 18 C 1.36934 * 120.00680 * 275.00489 * 17 4 2 19 19 H 1.07998 * 119.99558 * 359.97438 * 18 17 4 20 20 C 1.38813 * 120.00285 * 179.97438 * 18 17 4 21 21 N 1.31612 * 120.00075 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99701 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47461 * 89.99736 * 22 20 18 24 24 H 1.48506 * 109.46549 * 209.99918 * 22 20 18 25 25 H 1.48500 * 109.47418 * 329.99244 * 22 20 18 26 26 H 1.09002 * 109.47588 * 300.00191 * 1 2 3 27 27 H 1.09001 * 109.47566 * 60.00578 * 1 2 3 28 28 H 1.08999 * 109.47207 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47588 * 239.99809 * 2 1 3 30 30 H 1.08995 * 109.47282 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47035 * 299.99555 * 3 2 1 32 32 H 1.08997 * 109.47186 * 59.99954 * 3 2 1 33 33 H 1.08994 * 109.47135 * 64.99678 * 6 4 2 34 34 H 1.09005 * 109.46685 * 305.00041 * 6 4 2 35 35 H 0.96995 * 119.99627 * 359.97438 * 7 6 4 36 36 H 1.09004 * 109.47061 * 60.00329 * 10 8 7 37 37 H 1.09002 * 109.47721 * 300.00762 * 10 8 7 38 38 H 1.08005 * 124.44548 * 315.24094 * 13 11 10 39 39 H 1.07999 * 124.56221 * 179.97438 * 14 13 11 40 40 H 1.09002 * 110.38747 * 224.83749 * 15 14 13 41 41 H 1.09000 * 110.38500 * 102.57217 * 15 14 13 42 42 H 1.09003 * 111.03946 * 98.52311 * 16 11 10 43 43 H 1.09001 * 111.07005 * 334.60155 * 16 11 10 44 44 H 0.97009 * 119.99697 * 94.99862 * 17 4 2 45 45 H 0.96994 * 120.00493 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1392 6 6 3.5700 -0.7206 1.2496 7 7 4.0584 -1.5129 2.3811 8 6 5.3834 -1.6541 2.5827 9 8 6.1715 -1.1249 1.8278 10 6 5.8858 -2.4685 3.7469 11 6 7.4158 -2.4681 3.7472 12 1 7.7950 -2.7791 2.7737 13 6 7.9417 -1.0979 4.1062 14 6 8.9189 -1.1796 4.9708 15 6 9.2022 -2.6190 5.3329 16 6 7.9545 -3.3994 4.8578 17 7 1.5517 -2.1024 1.2494 18 6 0.3101 -2.3897 1.7505 19 1 -0.3089 -1.5981 2.1461 20 6 -0.1527 -3.6984 1.7501 21 7 0.6015 -4.6630 1.2676 22 14 -1.8467 -4.0901 2.4331 23 1 -2.8530 -3.9963 1.3452 24 1 -1.8488 -5.4659 2.9923 25 1 -2.1848 -3.1197 3.5051 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.9329 0.3032 1.3393 34 1 3.9336 -1.1548 0.3182 35 1 3.4280 -1.9357 2.9850 36 1 5.5225 -3.4923 3.6577 37 1 5.5225 -2.0339 4.6782 38 1 7.5616 -0.1720 3.7004 39 1 9.4519 -0.3316 5.3748 40 1 9.3267 -2.7219 6.4109 41 1 10.0923 -2.9732 4.8130 42 1 8.2326 -4.3722 4.4521 43 1 7.2297 -3.5071 5.6647 44 1 2.1078 -2.8135 0.8944 45 1 0.2780 -5.5774 1.2670 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271808257.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:32 Heat of formation + Delta-G solvation = -48.333988 kcal Electronic energy + Delta-G solvation = -22274.008741 eV Core-core repulsion = 19097.390185 eV Total energy + Delta-G solvation = -3176.618556 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.97395 -39.38027 -38.52397 -35.19014 -34.90479 -32.64980 -32.05753 -29.81849 -29.51101 -27.50911 -26.49365 -25.23511 -23.27253 -21.56056 -21.24752 -20.68880 -19.60619 -19.13670 -17.83394 -17.15660 -16.94664 -16.73471 -16.19157 -15.84185 -15.58781 -15.16332 -14.89674 -14.83835 -14.33678 -13.90493 -13.51272 -13.41719 -12.93909 -12.89510 -12.83053 -12.74230 -12.70556 -12.65305 -12.45501 -12.26362 -12.07025 -11.98836 -11.96879 -11.77137 -11.66241 -11.44215 -11.28247 -10.88808 -10.67240 -9.93402 -9.75408 -8.94869 -7.86491 -5.13544 1.41100 1.50711 1.52538 1.59113 1.75119 2.38499 2.60903 3.46710 3.67912 3.76443 3.87302 3.94694 4.01288 4.07998 4.29938 4.32585 4.37811 4.47030 4.54042 4.59377 4.66117 4.69212 4.79088 4.79838 4.92436 4.97989 5.00258 5.02432 5.07625 5.12436 5.15499 5.26618 5.31397 5.33877 5.43735 5.57140 5.62642 5.65272 5.70559 5.77422 6.02947 6.33610 6.68443 7.34774 7.41676 8.12847 8.38408 9.36431 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016326 B = 0.004179 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.636896 B = 6699.264967 C = 8088.004936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C -0.140 4.140 4 C 0.173 3.827 5 H 0.056 0.944 6 C 0.123 3.877 7 N -0.715 5.715 8 C 0.506 3.494 9 O -0.585 6.585 10 C -0.127 4.127 11 C -0.053 4.053 12 H 0.067 0.933 13 C -0.166 4.166 14 C -0.172 4.172 15 C -0.098 4.098 16 C -0.119 4.119 17 N -0.727 5.727 18 C -0.215 4.215 19 H 0.079 0.921 20 C -0.070 4.070 21 N -0.967 5.967 22 Si 0.958 3.042 23 H -0.296 1.296 24 H -0.302 1.302 25 H -0.269 1.269 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.044 0.956 35 H 0.410 0.590 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.135 0.865 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.372 0.628 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.804 7.501 7.421 15.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.129 4.129 3 C -0.198 4.198 4 C 0.064 3.936 5 H 0.074 0.926 6 C -0.002 4.002 7 N -0.366 5.366 8 C 0.294 3.706 9 O -0.466 6.466 10 C -0.167 4.167 11 C -0.072 4.072 12 H 0.085 0.915 13 C -0.184 4.184 14 C -0.189 4.189 15 C -0.135 4.135 16 C -0.156 4.156 17 N -0.366 5.366 18 C -0.347 4.347 19 H 0.097 0.903 20 C -0.262 4.262 21 N -0.619 5.619 22 Si 0.789 3.211 23 H -0.223 1.223 24 H -0.229 1.229 25 H -0.194 1.194 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.246 0.754 36 H 0.123 0.877 37 H 0.128 0.872 38 H 0.122 0.878 39 H 0.153 0.847 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.204 0.796 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 12.168 7.899 6.995 16.105 hybrid contribution -1.287 -0.870 -0.135 1.559 sum 10.882 7.029 6.860 14.659 Atomic orbital electron populations 1.21732 0.95399 1.01755 1.00310 1.21631 0.96416 0.96290 0.98515 1.21844 1.00823 0.94969 1.02159 1.20666 0.90203 0.86063 0.96625 0.92607 1.21555 0.94442 0.95474 0.88696 1.46072 1.07174 1.52792 1.30575 1.21235 0.81853 0.80691 0.86822 1.90633 1.56096 1.50609 1.49263 1.21738 0.96885 1.01220 0.96814 1.20789 0.92777 0.94020 0.99594 0.91517 1.23281 0.98957 0.97656 0.98477 1.23570 0.98026 0.98771 0.98568 1.21384 0.98216 0.91838 1.02087 1.22584 0.97587 0.98068 0.97401 1.42565 1.17240 1.03340 1.73502 1.19470 0.93226 0.92106 1.29886 0.90339 1.25336 1.01188 0.96164 1.03555 1.69798 1.38336 0.99746 1.53988 0.85364 0.81052 0.76725 0.77984 1.22348 1.22894 1.19388 0.93375 0.93085 0.93215 0.93321 0.92474 0.92106 0.92183 0.90449 0.93784 0.75412 0.87734 0.87208 0.87816 0.84741 0.89637 0.90291 0.89975 0.89796 0.79608 0.94430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.64 8.26 71.98 0.59 -4.04 16 2 C -0.11 -3.52 2.69 -10.79 -0.03 -3.55 16 3 C -0.14 -3.60 8.84 71.98 0.64 -2.97 16 4 C 0.17 6.20 2.18 44.99 0.10 6.29 16 5 H 0.06 1.99 8.08 -2.39 -0.02 1.97 16 6 C 0.12 4.14 4.73 86.38 0.41 4.54 16 7 N -0.72 -23.33 5.39 -463.06 -2.50 -25.83 16 8 C 0.51 16.30 7.63 87.66 0.67 16.97 16 9 O -0.58 -22.41 14.92 -3.04 -0.05 -22.45 16 10 C -0.13 -3.12 5.09 29.84 0.15 -2.96 16 11 C -0.05 -1.27 2.52 -10.86 -0.03 -1.30 16 12 H 0.07 1.87 7.90 -2.38 -0.02 1.86 16 13 C -0.17 -4.06 9.27 26.06 0.24 -3.82 16 14 C -0.17 -3.36 10.79 26.06 0.28 -3.08 16 15 C -0.10 -1.59 6.80 30.53 0.21 -1.38 16 16 C -0.12 -2.10 6.71 31.71 0.21 -1.89 16 17 N -0.73 -32.71 4.44 -322.94 -1.43 -34.15 16 18 C -0.22 -10.69 7.57 84.03 0.64 -10.05 16 19 H 0.08 3.77 7.40 -2.91 -0.02 3.74 16 20 C -0.07 -3.75 5.50 84.86 0.47 -3.29 16 21 N -0.97 -56.10 13.06 21.65 0.28 -55.82 16 22 Si 0.96 43.95 29.55 68.60 2.03 45.98 16 23 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 24 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.05 2.08 6.01 -2.39 -0.01 2.07 16 29 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.06 1.41 6.55 -2.39 -0.02 1.40 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 33 H 0.08 2.41 6.71 -2.39 -0.02 2.39 16 34 H 0.04 1.63 8.14 -2.38 -0.02 1.62 16 35 H 0.41 13.41 8.14 -92.71 -0.75 12.66 16 36 H 0.10 2.40 8.14 -2.38 -0.02 2.38 16 37 H 0.11 2.29 8.13 -2.39 -0.02 2.27 16 38 H 0.10 2.92 7.58 -2.91 -0.02 2.89 16 39 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 40 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.08 1.32 7.91 -2.39 -0.02 1.30 16 44 H 0.37 18.74 7.80 -92.70 -0.72 18.02 16 45 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -61.30 357.26 2.37 -58.92 By element: Atomic # 1 Polarization: 44.38 SS G_CDS: -0.51 Total: 43.87 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: 4.55 Total: -10.53 kcal Atomic # 7 Polarization: -112.15 SS G_CDS: -3.65 Total: -115.79 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.05 Total: -22.45 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -61.30 2.37 -58.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271808257.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.591 kcal (2) G-P(sol) polarization free energy of solvation -61.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds