Wall clock time and date at job start Tue Mar 31 2020 01:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46941 * 2 1 4 4 C 1.52999 * 109.46941 * 179.97438 * 3 2 1 5 5 H 1.09006 * 115.55012 * 29.32750 * 4 3 2 6 6 C 1.53000 * 117.49881 * 243.62393 * 4 3 2 7 7 C 1.52998 * 117.49718 * 175.00122 * 4 3 2 8 8 H 1.08996 * 117.49669 * 359.97024 * 7 4 3 9 9 C 1.50700 * 117.49490 * 214.97892 * 7 4 3 10 10 O 1.21279 * 120.00246 * 359.72595 * 9 7 4 11 11 N 1.34780 * 119.99959 * 179.97438 * 9 7 4 12 12 C 1.46492 * 120.00281 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.47498 * 180.21363 * 12 11 9 14 14 N 1.46500 * 112.84829 * 292.10046 * 13 12 11 15 15 C 1.36941 * 120.00155 * 294.87071 * 14 13 12 16 16 H 1.08003 * 119.99461 * 353.77821 * 15 14 13 17 17 C 1.38813 * 120.00213 * 173.77574 * 15 14 13 18 18 N 1.31615 * 119.99827 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00062 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47074 * 59.99901 * 19 17 15 21 21 H 1.48492 * 109.47133 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47193 * 300.00371 * 19 17 15 23 23 C 1.53778 * 113.61682 * 160.90299 * 13 12 11 24 24 C 1.53954 * 87.01913 * 220.04708 * 23 13 12 25 25 C 1.53778 * 113.61243 * 63.29404 * 13 12 11 26 26 H 1.09000 * 109.47186 * 300.00082 * 1 2 3 27 27 H 1.08994 * 109.47362 * 60.00190 * 1 2 3 28 28 H 1.08999 * 109.47270 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47186 * 239.99918 * 2 1 3 30 30 H 1.09003 * 109.46809 * 119.99809 * 2 1 3 31 31 H 1.09000 * 109.47247 * 59.99956 * 3 2 1 32 32 H 1.08994 * 109.46937 * 300.00070 * 3 2 1 33 33 H 1.08996 * 117.50260 * 145.02361 * 6 4 3 34 34 H 1.09009 * 117.49748 * 359.97438 * 6 4 3 35 35 H 0.97004 * 119.99995 * 0.02562 * 11 9 7 36 36 H 1.08999 * 109.47099 * 300.21394 * 12 11 9 37 37 H 1.09004 * 109.47359 * 60.21100 * 12 11 9 38 38 H 0.96998 * 119.99919 * 114.86831 * 14 13 12 39 39 H 0.97003 * 120.00088 * 179.97438 * 18 17 15 40 40 H 1.09005 * 113.61616 * 334.56895 * 23 13 12 41 41 H 1.09005 * 113.61598 * 105.47355 * 23 13 12 42 42 H 1.09000 * 113.54091 * 270.80691 * 24 23 13 43 43 H 1.09002 * 113.74259 * 139.94550 * 24 23 13 44 44 H 1.09001 * 113.61668 * 254.53031 * 25 13 12 45 45 H 1.08997 * 113.61974 * 25.35586 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 4.0403 0.5851 -0.4807 6 6 4.2759 2.0457 1.2167 7 6 4.2764 2.7945 -0.1175 8 1 3.6512 3.6839 -0.1962 9 6 5.5695 2.8387 -0.8901 10 8 6.0148 1.8252 -1.3856 11 7 6.2338 4.0035 -1.0262 12 6 7.4906 4.0465 -1.7777 13 6 8.0373 5.4755 -1.7758 14 7 7.2069 6.4033 -2.5476 15 6 7.0816 6.2456 -3.9021 16 1 7.6722 5.5016 -4.4160 17 6 6.1956 7.0420 -4.6146 18 7 5.4763 7.9490 -3.9884 19 14 6.0252 6.8273 -6.4624 20 1 5.5821 5.4418 -6.7610 21 1 5.0215 7.7904 -6.9821 22 1 7.3363 7.0786 -7.1129 23 6 9.5351 5.5625 -2.1135 24 6 9.6364 6.6425 -1.0210 25 6 8.4010 5.9940 -0.3745 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8899 33 1 5.2108 1.5851 1.5357 34 1 3.6502 2.4429 2.0162 35 1 5.8797 4.8133 -0.6265 36 1 8.2157 3.3795 -1.3116 37 1 7.3111 3.7275 -2.8045 38 1 6.7457 7.1294 -2.0992 39 1 4.8574 8.5058 -4.4863 40 1 10.0887 4.6528 -1.8808 41 1 9.7353 5.9359 -3.1178 42 1 9.4570 7.6526 -1.3894 43 1 10.5376 6.5679 -0.4124 44 1 7.6870 6.7153 0.0231 45 1 8.6426 5.2025 0.3349 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273146900.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:05 Heat of formation + Delta-G solvation = -3.287196 kcal Electronic energy + Delta-G solvation = -22115.452791 eV Core-core repulsion = 18940.787611 eV Total energy + Delta-G solvation = -3174.665180 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.78721 -38.72379 -36.97611 -33.93658 -33.79556 -33.25548 -30.04523 -28.03360 -27.07492 -25.29499 -24.16756 -23.29920 -22.06852 -21.47574 -20.54076 -19.65511 -18.19459 -17.16189 -16.99139 -15.62141 -15.34730 -15.18192 -14.85630 -14.44697 -14.22060 -14.06963 -13.62734 -13.39889 -13.20368 -12.82397 -12.61270 -12.35993 -12.05008 -11.98361 -11.76187 -11.40889 -11.23715 -11.11789 -11.01321 -10.94075 -10.83526 -10.37534 -10.25724 -10.21404 -10.10847 -9.96955 -9.72995 -9.50788 -9.39286 -8.86995 -8.44679 -7.04478 -5.82929 -3.12591 2.86618 3.42316 3.46883 3.48309 3.59362 3.92832 4.53408 4.59265 4.78454 4.84971 4.98874 5.05898 5.17828 5.18957 5.26654 5.28721 5.37699 5.42157 5.46046 5.54987 5.61803 5.66898 5.69696 5.76048 5.79026 5.91125 5.96756 6.07978 6.11056 6.13583 6.15308 6.19399 6.32409 6.35801 6.39710 6.55578 6.72365 6.91976 6.98847 7.09048 7.69196 8.05201 8.36012 8.70769 9.47194 10.00796 10.36188 11.39074 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013874 B = 0.004363 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.743091 B = 6415.742658 C = 7801.985616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.091 4.091 4 C -0.119 4.119 5 H 0.116 0.884 6 C -0.151 4.151 7 C -0.186 4.186 8 H 0.122 0.878 9 C 0.538 3.462 10 O -0.557 6.557 11 N -0.700 5.700 12 C 0.120 3.880 13 C 0.174 3.826 14 N -0.699 5.699 15 C -0.236 4.236 16 H 0.070 0.930 17 C -0.008 4.008 18 N -0.931 5.931 19 Si 0.905 3.095 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.285 1.285 23 C -0.151 4.151 24 C -0.128 4.128 25 C -0.144 4.144 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.401 0.599 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.386 0.614 39 H 0.256 0.744 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.091 -9.603 12.248 15.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.128 4.128 4 C -0.138 4.138 5 H 0.134 0.866 6 C -0.188 4.188 7 C -0.207 4.207 8 H 0.140 0.860 9 C 0.324 3.676 10 O -0.436 6.436 11 N -0.348 5.348 12 C -0.006 4.006 13 C 0.081 3.919 14 N -0.340 5.340 15 C -0.367 4.367 16 H 0.088 0.912 17 C -0.204 4.204 18 N -0.579 5.579 19 Si 0.735 3.265 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 C -0.191 4.191 24 C -0.166 4.166 25 C -0.182 4.182 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.235 0.765 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.221 0.779 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.786 -10.325 11.685 15.840 hybrid contribution -0.458 0.717 -0.870 1.217 sum -3.244 -9.608 10.816 14.826 Atomic orbital electron populations 1.21782 0.95987 1.01475 1.01815 1.21498 0.95539 0.96651 1.02230 1.21246 0.92129 0.97182 1.02265 1.22402 0.94492 0.95836 1.01030 0.86587 1.23060 1.02899 1.02487 0.90392 1.22328 0.98218 0.98659 1.01536 0.85990 1.19559 0.84501 0.83512 0.80042 1.90642 1.68855 1.34325 1.49771 1.45693 1.24616 1.10221 1.54314 1.21853 0.84142 0.98351 0.96257 1.20809 0.90840 0.88875 0.91368 1.42054 1.55626 1.31655 1.04663 1.19061 1.17928 1.16270 0.83467 0.91211 1.24713 0.98730 0.98983 0.97965 1.69641 1.28910 1.24505 1.34865 0.86307 0.77348 0.77277 0.85524 1.21216 1.21714 1.21210 1.23345 0.97899 0.98023 0.99861 1.22661 0.96892 0.99270 0.97756 1.23133 0.98505 1.00101 0.96458 0.92845 0.92674 0.92875 0.91807 0.91939 0.91722 0.91282 0.88534 0.88103 0.76512 0.92897 0.91396 0.77934 0.93458 0.91345 0.90711 0.90056 0.92744 0.91679 0.90476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.12 -1.10 5.89 -26.73 -0.16 -1.26 16 3 C -0.09 -0.92 5.50 -26.73 -0.15 -1.07 16 4 C -0.12 -1.46 5.25 -90.62 -0.48 -1.93 16 5 H 0.12 1.62 7.60 -51.93 -0.39 1.23 16 6 C -0.15 -1.67 9.88 -26.73 -0.26 -1.93 16 7 C -0.19 -2.55 5.91 -91.77 -0.54 -3.10 16 8 H 0.12 1.55 8.14 -51.93 -0.42 1.13 16 9 C 0.54 9.53 7.61 -10.98 -0.08 9.45 16 10 O -0.56 -11.72 16.26 5.56 0.09 -11.63 16 11 N -0.70 -12.23 5.42 -60.30 -0.33 -12.56 16 12 C 0.12 2.27 5.08 -4.05 -0.02 2.25 16 13 C 0.17 3.24 0.80 -131.01 -0.11 3.13 16 14 N -0.70 -16.16 5.19 -46.48 -0.24 -16.40 16 15 C -0.24 -6.26 9.04 -15.06 -0.14 -6.39 16 16 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 17 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 18 N -0.93 -27.01 13.07 55.49 0.73 -26.29 16 19 Si 0.90 22.26 29.55 -169.99 -5.02 17.23 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 C -0.15 -2.60 7.29 -25.83 -0.19 -2.79 16 24 C -0.13 -2.00 8.00 -25.83 -0.21 -2.21 16 25 C -0.14 -2.22 7.04 -25.92 -0.18 -2.40 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.58 7.87 -51.93 -0.41 0.17 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.10 0.90 8.03 -51.92 -0.42 0.48 16 35 H 0.40 6.53 8.30 -40.82 -0.34 6.20 16 36 H 0.05 0.94 8.02 -51.93 -0.42 0.52 16 37 H 0.07 1.50 7.80 -51.93 -0.41 1.10 16 38 H 0.39 9.49 7.87 -40.82 -0.32 9.17 16 39 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.07 1.05 8.01 -51.93 -0.42 0.63 16 41 H 0.07 1.44 7.87 -51.93 -0.41 1.03 16 42 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.99 8.09 -51.93 -0.42 0.57 16 45 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 LS Contribution 368.62 15.07 5.56 5.56 Total: -1.00 -30.14 368.62 -9.60 -39.74 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: -8.14 Total: 13.77 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -2.24 Total: -9.42 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.16 Total: -55.25 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.63 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.14 -9.60 -39.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273146900.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.450 kcal (2) G-P(sol) polarization free energy of solvation -30.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds