Wall clock time and date at job start Tue Mar 31 2020 01:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46941 * 2 1 4 4 C 1.52999 * 109.46941 * 179.97438 * 3 2 1 5 5 H 1.09006 * 115.55012 * 29.32750 * 4 3 2 6 6 C 1.53000 * 117.49881 * 243.62393 * 4 3 2 7 7 C 1.52998 * 117.49718 * 175.00122 * 4 3 2 8 8 H 1.08996 * 117.49669 * 359.97024 * 7 4 3 9 9 C 1.50700 * 117.49490 * 214.97892 * 7 4 3 10 10 O 1.21279 * 120.00246 * 359.72595 * 9 7 4 11 11 N 1.34780 * 119.99959 * 179.97438 * 9 7 4 12 12 C 1.46492 * 120.00281 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.47498 * 180.21363 * 12 11 9 14 14 N 1.46500 * 112.84829 * 292.10046 * 13 12 11 15 15 C 1.36941 * 120.00155 * 294.87071 * 14 13 12 16 16 H 1.08003 * 119.99461 * 353.77821 * 15 14 13 17 17 C 1.38813 * 120.00213 * 173.77574 * 15 14 13 18 18 N 1.31615 * 119.99827 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00062 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47074 * 59.99901 * 19 17 15 21 21 H 1.48492 * 109.47133 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47193 * 300.00371 * 19 17 15 23 23 C 1.53778 * 113.61682 * 160.90299 * 13 12 11 24 24 C 1.53954 * 87.01913 * 220.04708 * 23 13 12 25 25 C 1.53778 * 113.61243 * 63.29404 * 13 12 11 26 26 H 1.09000 * 109.47186 * 300.00082 * 1 2 3 27 27 H 1.08994 * 109.47362 * 60.00190 * 1 2 3 28 28 H 1.08999 * 109.47270 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47186 * 239.99918 * 2 1 3 30 30 H 1.09003 * 109.46809 * 119.99809 * 2 1 3 31 31 H 1.09000 * 109.47247 * 59.99956 * 3 2 1 32 32 H 1.08994 * 109.46937 * 300.00070 * 3 2 1 33 33 H 1.08996 * 117.50260 * 145.02361 * 6 4 3 34 34 H 1.09009 * 117.49748 * 359.97438 * 6 4 3 35 35 H 0.97004 * 119.99995 * 0.02562 * 11 9 7 36 36 H 1.08999 * 109.47099 * 300.21394 * 12 11 9 37 37 H 1.09004 * 109.47359 * 60.21100 * 12 11 9 38 38 H 0.96998 * 119.99919 * 114.86831 * 14 13 12 39 39 H 0.97003 * 120.00088 * 179.97438 * 18 17 15 40 40 H 1.09005 * 113.61616 * 334.56895 * 23 13 12 41 41 H 1.09005 * 113.61598 * 105.47355 * 23 13 12 42 42 H 1.09000 * 113.54091 * 270.80691 * 24 23 13 43 43 H 1.09002 * 113.74259 * 139.94550 * 24 23 13 44 44 H 1.09001 * 113.61668 * 254.53031 * 25 13 12 45 45 H 1.08997 * 113.61974 * 25.35586 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 4.0403 0.5851 -0.4807 6 6 4.2759 2.0457 1.2167 7 6 4.2764 2.7945 -0.1175 8 1 3.6512 3.6839 -0.1962 9 6 5.5695 2.8387 -0.8901 10 8 6.0148 1.8252 -1.3856 11 7 6.2338 4.0035 -1.0262 12 6 7.4906 4.0465 -1.7777 13 6 8.0373 5.4755 -1.7758 14 7 7.2069 6.4033 -2.5476 15 6 7.0816 6.2456 -3.9021 16 1 7.6722 5.5016 -4.4160 17 6 6.1956 7.0420 -4.6146 18 7 5.4763 7.9490 -3.9884 19 14 6.0252 6.8273 -6.4624 20 1 5.5821 5.4418 -6.7610 21 1 5.0215 7.7904 -6.9821 22 1 7.3363 7.0786 -7.1129 23 6 9.5351 5.5625 -2.1135 24 6 9.6364 6.6425 -1.0210 25 6 8.4010 5.9940 -0.3745 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8899 33 1 5.2108 1.5851 1.5357 34 1 3.6502 2.4429 2.0162 35 1 5.8797 4.8133 -0.6265 36 1 8.2157 3.3795 -1.3116 37 1 7.3111 3.7275 -2.8045 38 1 6.7457 7.1294 -2.0992 39 1 4.8574 8.5058 -4.4863 40 1 10.0887 4.6528 -1.8808 41 1 9.7353 5.9359 -3.1178 42 1 9.4570 7.6526 -1.3894 43 1 10.5376 6.5679 -0.4124 44 1 7.6870 6.7153 0.0231 45 1 8.6426 5.2025 0.3349 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273146900.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:05 Heat of formation + Delta-G solvation = -21.292708 kcal Electronic energy + Delta-G solvation = -22116.233568 eV Core-core repulsion = 18940.787611 eV Total energy + Delta-G solvation = -3175.445958 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.15235 -40.10518 -38.09034 -35.30646 -35.19686 -34.71628 -31.94078 -29.31476 -28.10676 -26.73708 -25.87407 -24.69324 -23.00318 -22.68359 -21.48639 -20.97301 -19.70191 -19.12168 -18.30617 -17.09962 -16.69726 -16.27934 -16.13824 -15.92225 -15.63587 -15.41308 -15.05679 -14.95229 -14.33002 -14.09783 -13.73168 -13.69610 -13.13745 -13.07602 -12.97471 -12.92267 -12.89209 -12.58159 -12.22287 -12.19007 -11.94908 -11.94110 -11.67720 -11.61193 -11.49762 -11.19325 -11.02362 -10.94173 -10.86878 -10.63681 -9.95812 -8.99841 -7.95406 -5.22198 1.43840 1.45453 1.50678 1.54552 2.28072 2.53440 2.87455 3.36237 3.63499 3.73393 3.77638 3.80581 3.89214 3.98533 4.07428 4.18330 4.21054 4.27366 4.31424 4.39024 4.62593 4.64191 4.81668 4.83870 4.87890 4.89043 4.90527 4.94055 4.99109 5.01383 5.08835 5.12237 5.20735 5.29734 5.36805 5.40845 5.41347 5.50501 5.52828 5.62671 5.69918 6.28980 6.65197 7.30579 7.35184 8.08874 8.33067 9.26774 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013874 B = 0.004363 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.743091 B = 6415.742658 C = 7801.985616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.086 4.086 4 C -0.122 4.122 5 H 0.093 0.907 6 C -0.123 4.123 7 C -0.203 4.203 8 H 0.134 0.866 9 C 0.531 3.469 10 O -0.597 6.597 11 N -0.697 5.697 12 C 0.129 3.871 13 C 0.159 3.841 14 N -0.705 5.705 15 C -0.226 4.226 16 H 0.064 0.936 17 C -0.064 4.064 18 N -0.961 5.961 19 Si 0.957 3.043 20 H -0.289 1.289 21 H -0.294 1.294 22 H -0.279 1.279 23 C -0.151 4.151 24 C -0.120 4.120 25 C -0.126 4.126 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.133 0.867 35 H 0.408 0.592 36 H 0.068 0.932 37 H 0.026 0.974 38 H 0.378 0.622 39 H 0.250 0.750 40 H 0.093 0.907 41 H 0.047 0.953 42 H 0.061 0.939 43 H 0.086 0.914 44 H 0.067 0.933 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.079 -10.089 14.440 17.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.123 4.123 4 C -0.140 4.140 5 H 0.111 0.889 6 C -0.160 4.160 7 C -0.224 4.224 8 H 0.152 0.848 9 C 0.319 3.681 10 O -0.479 6.479 11 N -0.345 5.345 12 C 0.002 3.998 13 C 0.067 3.933 14 N -0.344 5.344 15 C -0.358 4.358 16 H 0.082 0.918 17 C -0.257 4.257 18 N -0.611 5.611 19 Si 0.787 3.213 20 H -0.216 1.216 21 H -0.220 1.220 22 H -0.206 1.206 23 C -0.191 4.191 24 C -0.157 4.157 25 C -0.163 4.163 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.151 0.849 35 H 0.243 0.757 36 H 0.086 0.914 37 H 0.044 0.956 38 H 0.211 0.789 39 H 0.059 0.941 40 H 0.111 0.889 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.105 0.895 44 H 0.086 0.914 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.746 -10.821 13.898 17.827 hybrid contribution -0.385 0.780 -1.529 1.759 sum -3.131 -10.042 12.369 16.237 Atomic orbital electron populations 1.21769 0.94986 1.02083 1.02052 1.21489 0.96382 0.95927 1.02063 1.21242 0.90412 0.97969 1.02688 1.22436 0.95773 0.94038 1.01797 0.88893 1.23193 1.02867 1.00113 0.89821 1.22312 0.96536 1.00035 1.03513 0.84821 1.20286 0.85462 0.82737 0.79595 1.90616 1.70196 1.35612 1.51514 1.45702 1.24291 1.10648 1.53897 1.21672 0.85189 0.98573 0.94345 1.21107 0.90779 0.87835 0.93537 1.42089 1.56223 1.32285 1.03842 1.19259 1.16534 1.14830 0.85192 0.91825 1.25312 0.99490 0.99648 1.01227 1.69755 1.29975 1.25645 1.35712 0.85469 0.77257 0.76646 0.81944 1.21591 1.21969 1.20564 1.23371 0.96767 0.99781 0.99155 1.22584 0.98408 0.97529 0.97175 1.23085 0.98045 1.00554 0.94657 0.91872 0.93165 0.92139 0.93039 0.91125 0.89756 0.92334 0.88793 0.84861 0.75716 0.91420 0.95553 0.78902 0.94121 0.88874 0.93451 0.92001 0.89516 0.91381 0.87783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 71.98 0.71 -1.44 16 2 C -0.12 -2.03 5.89 30.60 0.18 -1.85 16 3 C -0.09 -1.60 5.50 30.60 0.17 -1.43 16 4 C -0.12 -2.85 5.25 -10.79 -0.06 -2.91 16 5 H 0.09 2.63 7.60 -2.38 -0.02 2.61 16 6 C -0.12 -2.39 9.88 30.60 0.30 -2.09 16 7 C -0.20 -5.32 5.91 -11.54 -0.07 -5.39 16 8 H 0.13 3.18 8.14 -2.39 -0.02 3.17 16 9 C 0.53 18.78 7.61 87.66 0.67 19.45 16 10 O -0.60 -25.63 16.26 -3.03 -0.05 -25.68 16 11 N -0.70 -24.10 5.42 -463.07 -2.51 -26.61 16 12 C 0.13 4.84 5.08 86.38 0.44 5.28 16 13 C 0.16 5.78 0.80 4.13 0.00 5.79 16 14 N -0.70 -32.85 5.19 -300.97 -1.56 -34.41 16 15 C -0.23 -12.18 9.04 84.03 0.76 -11.42 16 16 H 0.06 3.45 7.83 -2.91 -0.02 3.43 16 17 C -0.06 -3.59 5.50 84.86 0.47 -3.13 16 18 N -0.96 -56.65 13.07 21.65 0.28 -56.36 16 19 Si 0.96 46.56 29.55 68.60 2.03 48.58 16 20 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 21 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 22 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 23 C -0.15 -5.00 7.29 31.18 0.23 -4.78 16 24 C -0.12 -3.44 8.00 31.18 0.25 -3.19 16 25 C -0.13 -3.54 7.04 31.12 0.22 -3.32 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.96 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.25 7.87 -2.39 -0.02 1.23 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 33 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.13 1.78 8.03 -2.38 -0.02 1.76 16 35 H 0.41 12.95 8.30 -92.71 -0.77 12.18 16 36 H 0.07 2.34 8.02 -2.39 -0.02 2.32 16 37 H 0.03 1.20 7.80 -2.38 -0.02 1.18 16 38 H 0.38 18.74 7.87 -92.71 -0.73 18.01 16 39 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 40 H 0.09 2.63 8.01 -2.38 -0.02 2.61 16 41 H 0.05 1.82 7.87 -2.38 -0.02 1.80 16 42 H 0.06 2.03 8.14 -2.39 -0.02 2.02 16 43 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.07 1.91 8.09 -2.39 -0.02 1.89 16 45 H 0.10 2.43 8.10 -2.39 -0.02 2.41 16 Total: -1.00 -66.60 368.62 1.92 -64.68 By element: Atomic # 1 Polarization: 40.75 SS G_CDS: -0.54 Total: 40.22 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: 4.27 Total: -10.42 kcal Atomic # 7 Polarization: -113.59 SS G_CDS: -3.79 Total: -117.38 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.05 Total: -25.68 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.58 kcal Total: -66.60 1.92 -64.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273146900.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.386 kcal (2) G-P(sol) polarization free energy of solvation -66.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds