Wall clock time and date at job start Tue Mar 31 2020 01:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46943 * 2 1 4 4 C 1.53001 * 109.47232 * 184.76250 * 3 2 1 5 5 N 1.46499 * 109.47108 * 184.92126 * 4 3 2 6 6 C 1.46898 * 124.37994 * 85.13976 * 5 4 3 7 7 C 1.54743 * 105.52810 * 163.18657 * 6 5 4 8 8 C 1.53443 * 101.45997 * 24.38126 * 7 6 5 9 9 C 1.53709 * 111.12053 * 214.92778 * 8 7 6 10 10 C 1.54808 * 102.78026 * 203.58340 * 9 8 7 11 11 C 1.54075 * 105.20527 * 20.77852 * 10 9 8 12 12 N 1.47445 * 111.50097 * 98.21702 * 8 7 6 13 13 C 1.46910 * 111.16620 * 278.16858 * 12 8 7 14 14 C 1.50703 * 109.46875 * 176.99374 * 13 12 8 15 15 H 1.08000 * 120.00309 * 5.02103 * 14 13 12 16 16 C 1.37876 * 119.99897 * 185.03019 * 14 13 12 17 17 N 1.31507 * 120.00164 * 185.39842 * 16 14 13 18 18 Si 1.86802 * 119.99901 * 5.39524 * 16 14 13 19 19 H 1.48506 * 109.47084 * 90.00208 * 18 16 14 20 20 H 1.48494 * 109.47242 * 209.99989 * 18 16 14 21 21 H 1.48499 * 109.47550 * 330.00538 * 18 16 14 22 22 C 1.34812 * 124.37143 * 265.11747 * 5 4 3 23 23 O 1.21274 * 125.17265 * 1.15794 * 22 5 4 24 24 H 1.08999 * 109.47054 * 295.14265 * 1 2 3 25 25 H 1.08994 * 109.47321 * 55.14620 * 1 2 3 26 26 H 1.09004 * 109.46634 * 175.14334 * 1 2 3 27 27 H 1.09003 * 109.47203 * 240.00493 * 2 1 3 28 28 H 1.08993 * 109.47462 * 119.99821 * 2 1 3 29 29 H 1.09002 * 109.46798 * 64.76064 * 3 2 1 30 30 H 1.08998 * 109.46754 * 304.76536 * 3 2 1 31 31 H 1.08998 * 109.46814 * 64.91421 * 4 3 2 32 32 H 1.09001 * 109.46922 * 304.91749 * 4 3 2 33 33 H 1.08998 * 110.23574 * 44.17266 * 6 5 4 34 34 H 1.09001 * 110.30955 * 282.24243 * 6 5 4 35 35 H 1.08996 * 111.02539 * 266.34383 * 7 6 5 36 36 H 1.08992 * 111.06288 * 142.44233 * 7 6 5 37 37 H 1.08999 * 110.74716 * 85.26308 * 9 8 7 38 38 H 1.08997 * 110.90872 * 321.97990 * 9 8 7 39 39 H 1.09003 * 110.29615 * 261.84719 * 10 9 8 40 40 H 1.09002 * 110.29791 * 139.71795 * 10 9 8 41 41 H 1.09003 * 109.90171 * 120.44888 * 11 10 9 42 42 H 1.09001 * 109.90475 * 241.51046 * 11 10 9 43 43 H 1.08999 * 109.46789 * 296.99111 * 13 12 8 44 44 H 1.08993 * 109.46935 * 56.98970 * 13 12 8 45 45 H 0.97005 * 120.00519 * 185.00633 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5653 1.4443 -0.1198 5 7 4.0628 2.8172 -0.0018 6 6 4.3423 3.4915 1.2729 7 6 5.2283 4.7080 0.9125 8 6 4.8418 4.9429 -0.5537 9 6 6.0484 5.4267 -1.3739 10 6 5.3821 6.1661 -2.5596 11 6 3.9610 6.5104 -2.0741 12 7 3.8389 6.0160 -0.6830 13 6 2.4846 5.5107 -0.4208 14 6 1.5011 6.6505 -0.4903 15 1 1.8343 7.6341 -0.7868 16 6 0.1758 6.4376 -0.1753 17 7 -0.7020 7.4033 -0.3374 18 14 -0.3730 4.7772 0.4818 19 1 -0.2779 4.7753 1.9638 20 1 -1.7787 4.5242 0.0757 21 1 0.5015 3.7122 -0.0716 22 6 4.3237 3.6248 -1.0493 23 8 4.1634 3.3309 -2.2149 24 1 -0.3633 0.4366 0.9303 25 1 -0.3634 0.5873 -0.8433 26 1 -0.3633 -1.0240 -0.0870 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.7479 1.9311 0.9296 30 1 1.6086 1.9804 -0.8442 31 1 3.8541 1.0349 -1.0878 32 1 3.9928 0.8334 0.6753 33 1 4.8780 2.8208 1.9447 34 1 3.4137 3.8253 1.7359 35 1 6.2862 4.4619 1.0034 36 1 4.9758 5.5722 1.5268 37 1 6.6383 4.5815 -1.7282 38 1 6.6662 6.1097 -0.7910 39 1 5.3360 5.5155 -3.4330 40 1 5.9326 7.0771 -2.7945 41 1 3.8119 7.5899 -2.0986 42 1 3.2230 6.0195 -2.7085 43 1 2.2255 4.7611 -1.1685 44 1 2.4503 5.0611 0.5714 45 1 -1.6195 7.2784 -0.0483 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274031583.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:11 Heat of formation + Delta-G solvation = -34.694071 kcal Electronic energy + Delta-G solvation = -24129.542518 eV Core-core repulsion = 20953.515433 eV Total energy + Delta-G solvation = -3176.027084 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.99835 -37.34203 -36.26423 -35.01764 -33.16705 -31.63031 -31.27571 -28.45204 -27.51594 -26.87321 -24.25595 -23.33637 -21.89325 -21.31329 -20.57636 -20.12057 -18.43788 -16.93632 -16.29959 -16.12527 -15.43820 -15.18736 -14.69042 -14.43814 -14.15082 -13.79190 -13.52668 -13.35110 -12.91952 -12.76913 -12.62175 -12.51457 -12.37124 -12.04954 -11.96006 -11.66010 -11.36657 -11.23987 -11.08510 -10.96532 -10.90921 -10.65404 -10.54389 -10.45030 -10.29660 -10.13250 -9.82202 -9.52756 -9.27993 -8.54848 -8.42819 -7.56793 -6.07443 -4.05229 2.90509 3.22011 3.24651 3.33866 3.36329 4.40764 4.48047 4.65599 4.82343 4.90390 4.94386 5.04714 5.11249 5.16074 5.23065 5.29425 5.39501 5.49210 5.54539 5.56013 5.65255 5.67950 5.81070 5.82617 5.90384 5.96093 6.04120 6.08419 6.17558 6.18478 6.25391 6.29451 6.37923 6.43510 6.62277 6.67954 6.79911 6.82266 6.97004 7.35167 7.44620 7.79758 7.86039 8.51140 8.59637 9.00122 9.53756 11.05040 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.011408 B = 0.009957 C = 0.006184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.793001 B = 2811.373866 C = 4526.840493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.143 4.143 4 C 0.130 3.870 5 N -0.622 5.622 6 C 0.100 3.900 7 C -0.115 4.115 8 C 0.054 3.946 9 C -0.097 4.097 10 C -0.129 4.129 11 C 0.050 3.950 12 N -0.471 5.471 13 C 0.153 3.847 14 C -0.508 4.508 15 H 0.081 0.919 16 C 0.071 3.929 17 N -0.897 5.897 18 Si 0.862 3.138 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.257 1.257 22 C 0.514 3.486 23 O -0.528 6.528 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.049 0.951 43 H -0.008 1.008 44 H 0.027 0.973 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.523 -11.752 3.482 16.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.182 4.182 4 C 0.007 3.993 5 N -0.357 5.357 6 C -0.023 4.023 7 C -0.153 4.153 8 C -0.040 4.040 9 C -0.135 4.135 10 C -0.167 4.167 11 C -0.078 4.078 12 N -0.195 5.195 13 C 0.027 3.973 14 C -0.546 4.546 15 H 0.099 0.901 16 C -0.130 4.130 17 N -0.536 5.536 18 Si 0.689 3.311 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.181 1.181 22 C 0.300 3.700 23 O -0.403 6.403 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.122 0.878 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.068 0.932 43 H 0.010 0.990 44 H 0.045 0.955 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.279 -11.540 3.182 16.447 hybrid contribution -0.959 -1.494 -0.002 1.775 sum 10.321 -13.034 3.180 16.926 Atomic orbital electron populations 1.21776 0.95768 1.01339 1.02253 1.21433 0.96154 0.96320 1.01703 1.22158 0.95614 0.97037 1.03357 1.21341 0.93794 0.81679 1.02447 1.48452 1.65838 1.13720 1.07689 1.22219 0.99961 0.94341 0.85778 1.22447 0.99047 0.98297 0.95525 1.22235 0.95870 0.89799 0.96112 1.22170 0.95365 0.99624 0.96342 1.22479 0.96451 0.99795 0.97969 1.22733 0.94971 1.01140 0.88963 1.64862 1.05558 1.25366 1.23734 1.20427 0.85386 0.96066 0.95427 1.20964 0.91158 0.96351 1.46155 0.90119 1.24854 0.96258 0.96486 0.95448 1.69897 1.03697 1.33236 1.46798 0.87070 0.78459 0.85941 0.79654 1.20235 1.21327 1.18078 1.21330 0.76744 0.86801 0.85112 1.90643 1.53740 1.78223 1.17683 0.92769 0.92535 0.92781 0.91971 0.92080 0.91688 0.91068 0.90263 0.90942 0.90822 0.90900 0.90074 0.87817 0.91610 0.90131 0.91496 0.91518 0.90368 0.93224 0.99009 0.95462 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 37.16 0.37 -1.52 16 2 C -0.12 -1.41 5.93 -26.73 -0.16 -1.57 16 3 C -0.14 -2.17 5.05 -26.73 -0.13 -2.31 16 4 C 0.13 1.82 5.99 -4.04 -0.02 1.79 16 5 N -0.62 -10.11 2.93 -172.55 -0.51 -10.62 16 6 C 0.10 1.38 6.59 -2.91 -0.02 1.36 16 7 C -0.12 -1.58 6.28 -25.58 -0.16 -1.74 16 8 C 0.05 0.93 0.64 -132.17 -0.08 0.85 16 9 C -0.10 -1.45 5.84 -25.41 -0.15 -1.59 16 10 C -0.13 -2.10 6.55 -25.22 -0.17 -2.27 16 11 C 0.05 1.02 5.70 -2.58 -0.01 1.00 16 12 N -0.47 -9.94 4.97 -219.25 -1.09 -11.03 16 13 C 0.15 3.76 2.69 -4.97 -0.01 3.75 16 14 C -0.51 -14.58 9.33 -34.44 -0.32 -14.90 16 15 H 0.08 2.51 7.76 -52.49 -0.41 2.10 16 16 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 17 N -0.90 -27.73 13.95 55.43 0.77 -26.96 16 18 Si 0.86 21.46 27.36 -169.99 -4.65 16.81 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.26 -6.12 5.58 56.52 0.32 -5.81 16 22 C 0.51 9.84 4.72 -11.29 -0.05 9.79 16 23 O -0.53 -11.74 17.01 5.56 0.09 -11.64 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 1.04 8.13 -51.93 -0.42 0.62 16 30 H 0.07 1.34 7.51 -51.93 -0.39 0.95 16 31 H 0.08 1.15 7.85 -51.93 -0.41 0.74 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 1.11 6.87 -51.93 -0.36 0.75 16 35 H 0.08 0.87 7.94 -51.93 -0.41 0.46 16 36 H 0.10 1.45 8.07 -51.93 -0.42 1.03 16 37 H 0.07 0.93 8.01 -51.93 -0.42 0.51 16 38 H 0.08 1.04 8.07 -51.93 -0.42 0.62 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.08 1.60 8.08 -51.93 -0.42 1.18 16 42 H 0.05 1.15 7.63 -51.93 -0.40 0.75 16 43 H -0.01 -0.21 6.46 -51.93 -0.34 -0.54 16 44 H 0.03 0.66 4.96 -51.93 -0.26 0.40 16 45 H 0.26 7.64 8.32 -40.82 -0.34 7.30 16 LS Contribution 345.64 15.07 5.21 5.21 Total: -1.00 -33.25 345.64 -9.28 -42.54 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -8.08 Total: 1.08 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -1.03 Total: -5.38 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: -0.82 Total: -48.60 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.65 Total: 16.81 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.25 -9.28 -42.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031583.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.841 kcal (2) G-P(sol) polarization free energy of solvation -33.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds