Wall clock time and date at job start Tue Mar 31 2020 01:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46943 * 2 1 4 4 C 1.53001 * 109.47232 * 184.76250 * 3 2 1 5 5 N 1.46499 * 109.47108 * 184.92126 * 4 3 2 6 6 C 1.46898 * 124.37994 * 85.13976 * 5 4 3 7 7 C 1.54743 * 105.52810 * 163.18657 * 6 5 4 8 8 C 1.53443 * 101.45997 * 24.38126 * 7 6 5 9 9 C 1.53709 * 111.12053 * 214.92778 * 8 7 6 10 10 C 1.54808 * 102.78026 * 203.58340 * 9 8 7 11 11 C 1.54075 * 105.20527 * 20.77852 * 10 9 8 12 12 N 1.47445 * 111.50097 * 98.21702 * 8 7 6 13 13 C 1.46910 * 111.16620 * 278.16858 * 12 8 7 14 14 C 1.50703 * 109.46875 * 176.99374 * 13 12 8 15 15 H 1.08000 * 120.00309 * 5.02103 * 14 13 12 16 16 C 1.37876 * 119.99897 * 185.03019 * 14 13 12 17 17 N 1.31507 * 120.00164 * 185.39842 * 16 14 13 18 18 Si 1.86802 * 119.99901 * 5.39524 * 16 14 13 19 19 H 1.48506 * 109.47084 * 90.00208 * 18 16 14 20 20 H 1.48494 * 109.47242 * 209.99989 * 18 16 14 21 21 H 1.48499 * 109.47550 * 330.00538 * 18 16 14 22 22 C 1.34812 * 124.37143 * 265.11747 * 5 4 3 23 23 O 1.21274 * 125.17265 * 1.15794 * 22 5 4 24 24 H 1.08999 * 109.47054 * 295.14265 * 1 2 3 25 25 H 1.08994 * 109.47321 * 55.14620 * 1 2 3 26 26 H 1.09004 * 109.46634 * 175.14334 * 1 2 3 27 27 H 1.09003 * 109.47203 * 240.00493 * 2 1 3 28 28 H 1.08993 * 109.47462 * 119.99821 * 2 1 3 29 29 H 1.09002 * 109.46798 * 64.76064 * 3 2 1 30 30 H 1.08998 * 109.46754 * 304.76536 * 3 2 1 31 31 H 1.08998 * 109.46814 * 64.91421 * 4 3 2 32 32 H 1.09001 * 109.46922 * 304.91749 * 4 3 2 33 33 H 1.08998 * 110.23574 * 44.17266 * 6 5 4 34 34 H 1.09001 * 110.30955 * 282.24243 * 6 5 4 35 35 H 1.08996 * 111.02539 * 266.34383 * 7 6 5 36 36 H 1.08992 * 111.06288 * 142.44233 * 7 6 5 37 37 H 1.08999 * 110.74716 * 85.26308 * 9 8 7 38 38 H 1.08997 * 110.90872 * 321.97990 * 9 8 7 39 39 H 1.09003 * 110.29615 * 261.84719 * 10 9 8 40 40 H 1.09002 * 110.29791 * 139.71795 * 10 9 8 41 41 H 1.09003 * 109.90171 * 120.44888 * 11 10 9 42 42 H 1.09001 * 109.90475 * 241.51046 * 11 10 9 43 43 H 1.08999 * 109.46789 * 296.99111 * 13 12 8 44 44 H 1.08993 * 109.46935 * 56.98970 * 13 12 8 45 45 H 0.97005 * 120.00519 * 185.00633 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5653 1.4443 -0.1198 5 7 4.0628 2.8172 -0.0018 6 6 4.3423 3.4915 1.2729 7 6 5.2283 4.7080 0.9125 8 6 4.8418 4.9429 -0.5537 9 6 6.0484 5.4267 -1.3739 10 6 5.3821 6.1661 -2.5596 11 6 3.9610 6.5104 -2.0741 12 7 3.8389 6.0160 -0.6830 13 6 2.4846 5.5107 -0.4208 14 6 1.5011 6.6505 -0.4903 15 1 1.8343 7.6341 -0.7868 16 6 0.1758 6.4376 -0.1753 17 7 -0.7020 7.4033 -0.3374 18 14 -0.3730 4.7772 0.4818 19 1 -0.2779 4.7753 1.9638 20 1 -1.7787 4.5242 0.0757 21 1 0.5015 3.7122 -0.0716 22 6 4.3237 3.6248 -1.0493 23 8 4.1634 3.3309 -2.2149 24 1 -0.3633 0.4366 0.9303 25 1 -0.3634 0.5873 -0.8433 26 1 -0.3633 -1.0240 -0.0870 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.7479 1.9311 0.9296 30 1 1.6086 1.9804 -0.8442 31 1 3.8541 1.0349 -1.0878 32 1 3.9928 0.8334 0.6753 33 1 4.8780 2.8208 1.9447 34 1 3.4137 3.8253 1.7359 35 1 6.2862 4.4619 1.0034 36 1 4.9758 5.5722 1.5268 37 1 6.6383 4.5815 -1.7282 38 1 6.6662 6.1097 -0.7910 39 1 5.3360 5.5155 -3.4330 40 1 5.9326 7.0771 -2.7945 41 1 3.8119 7.5899 -2.0986 42 1 3.2230 6.0195 -2.7085 43 1 2.2255 4.7611 -1.1685 44 1 2.4503 5.0611 0.5714 45 1 -1.6195 7.2784 -0.0483 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274031583.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:11 Heat of formation + Delta-G solvation = -58.201427 kcal Electronic energy + Delta-G solvation = -24130.561873 eV Core-core repulsion = 20953.515433 eV Total energy + Delta-G solvation = -3177.046440 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.38036 -38.77468 -37.65346 -36.16372 -35.22510 -33.17623 -32.76879 -29.64076 -28.94722 -28.68275 -25.51187 -24.74131 -23.59716 -22.40320 -21.87053 -21.64689 -19.85454 -18.98354 -17.76804 -17.52707 -16.84407 -16.55686 -16.17192 -16.01209 -15.70889 -15.02913 -14.93805 -14.70126 -14.59224 -14.15799 -14.11840 -13.98527 -13.72029 -13.48202 -13.21156 -13.11856 -12.77430 -12.60023 -12.43778 -12.35375 -12.19245 -12.07807 -11.99247 -11.82636 -11.71560 -11.64516 -11.59986 -11.44061 -10.90015 -10.79492 -9.70593 -9.28990 -8.37820 -6.41418 1.20733 1.25938 1.36636 1.46124 2.03644 2.25207 2.93229 3.06368 3.43168 3.53257 3.73574 3.84177 3.86767 3.95600 4.09313 4.14586 4.21281 4.28358 4.34548 4.47941 4.55721 4.59846 4.64810 4.69857 4.71089 4.74586 4.85286 4.90086 4.92454 4.94285 5.02202 5.05458 5.12262 5.16662 5.20021 5.22512 5.33638 5.33927 5.41413 5.65395 5.85245 6.02839 6.06756 6.45552 6.64210 7.13187 7.22016 8.78011 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.011408 B = 0.009957 C = 0.006184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.793001 B = 2811.373866 C = 4526.840493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.127 3.873 5 N -0.621 5.621 6 C 0.093 3.907 7 C -0.107 4.107 8 C 0.041 3.959 9 C -0.088 4.088 10 C -0.121 4.121 11 C 0.048 3.952 12 N -0.477 5.477 13 C 0.179 3.821 14 C -0.518 4.518 15 H 0.041 0.959 16 C 0.014 3.986 17 N -0.941 5.941 18 Si 0.930 3.070 19 H -0.253 1.253 20 H -0.287 1.287 21 H -0.250 1.250 22 C 0.500 3.500 23 O -0.573 6.573 24 H 0.051 0.949 25 H 0.031 0.969 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.057 0.943 30 H 0.021 0.979 31 H 0.069 0.931 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.056 0.944 35 H 0.124 0.876 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.112 0.888 39 H 0.056 0.944 40 H 0.096 0.904 41 H 0.066 0.934 42 H 0.005 0.995 43 H -0.039 1.039 44 H 0.039 0.961 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.038 -14.346 6.050 20.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.149 4.149 3 C -0.180 4.180 4 C 0.005 3.995 5 N -0.354 5.354 6 C -0.029 4.029 7 C -0.145 4.145 8 C -0.053 4.053 9 C -0.126 4.126 10 C -0.159 4.159 11 C -0.081 4.081 12 N -0.201 5.201 13 C 0.052 3.948 14 C -0.556 4.556 15 H 0.060 0.940 16 C -0.184 4.184 17 N -0.582 5.582 18 Si 0.753 3.247 19 H -0.177 1.177 20 H -0.213 1.213 21 H -0.174 1.174 22 C 0.286 3.714 23 O -0.452 6.452 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.110 0.890 29 H 0.076 0.924 30 H 0.040 0.960 31 H 0.088 0.912 32 H 0.137 0.863 33 H 0.141 0.859 34 H 0.074 0.926 35 H 0.142 0.858 36 H 0.120 0.880 37 H 0.099 0.901 38 H 0.130 0.870 39 H 0.075 0.925 40 H 0.114 0.886 41 H 0.085 0.915 42 H 0.024 0.976 43 H -0.021 1.021 44 H 0.057 0.943 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.816 -14.139 5.794 20.600 hybrid contribution -1.764 -0.616 -0.862 2.057 sum 12.052 -14.755 4.931 19.680 Atomic orbital electron populations 1.21827 0.96278 1.02379 1.01087 1.21425 0.95696 0.94236 1.03558 1.22115 0.96529 0.98661 1.00649 1.21547 0.92974 0.81181 1.03762 1.48660 1.64458 1.14310 1.07923 1.22484 0.99893 0.95360 0.85146 1.22559 1.01528 0.98284 0.92101 1.22552 0.95314 0.87961 0.99451 1.22255 0.94594 1.00471 0.95321 1.22424 0.93860 1.01250 0.98349 1.22704 0.96944 0.99892 0.88511 1.64790 1.04447 1.27185 1.23724 1.19976 0.86625 0.93409 0.94805 1.21215 0.92561 0.96120 1.45749 0.94048 1.25752 0.96278 1.00600 0.95736 1.70039 1.04262 1.35795 1.48084 0.85997 0.77737 0.80808 0.80130 1.17708 1.21333 1.17389 1.21683 0.76758 0.87838 0.85074 1.90610 1.55753 1.79196 1.19624 0.92979 0.94927 0.90418 0.91233 0.88962 0.92434 0.96025 0.91219 0.86290 0.85887 0.92603 0.85789 0.87958 0.90076 0.86976 0.92483 0.88552 0.91526 0.97594 1.02124 0.94282 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 9.91 71.98 0.71 -2.92 16 2 C -0.11 -2.38 5.93 30.60 0.18 -2.20 16 3 C -0.14 -4.11 5.05 30.60 0.15 -3.95 16 4 C 0.13 3.23 5.99 86.38 0.52 3.75 16 5 N -0.62 -18.76 2.93 -818.20 -2.40 -21.16 16 6 C 0.09 2.19 6.59 86.90 0.57 2.76 16 7 C -0.11 -2.51 6.28 31.34 0.20 -2.31 16 8 C 0.04 1.34 0.64 2.86 0.00 1.35 16 9 C -0.09 -2.39 5.84 31.45 0.18 -2.21 16 10 C -0.12 -3.87 6.55 31.57 0.21 -3.66 16 11 C 0.05 2.05 5.70 86.43 0.49 2.54 16 12 N -0.48 -20.44 4.97 -847.58 -4.21 -24.65 16 13 C 0.18 9.06 2.69 85.56 0.23 9.29 16 14 C -0.52 -31.25 9.33 25.60 0.24 -31.02 16 15 H 0.04 2.75 7.76 -2.91 -0.02 2.72 16 16 C 0.01 0.86 5.47 84.66 0.46 1.33 16 17 N -0.94 -60.44 13.95 21.45 0.30 -60.14 16 18 Si 0.93 45.61 27.36 68.60 1.88 47.49 16 19 H -0.25 -11.41 7.11 99.48 0.71 -10.71 16 20 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 21 H -0.25 -11.91 5.58 99.48 0.56 -11.35 16 22 C 0.50 18.81 4.72 87.45 0.41 19.22 16 23 O -0.57 -26.15 17.01 -3.01 -0.05 -26.20 16 24 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 27 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.06 1.73 8.13 -2.39 -0.02 1.71 16 30 H 0.02 0.82 7.51 -2.39 -0.02 0.80 16 31 H 0.07 1.93 7.85 -2.39 -0.02 1.91 16 32 H 0.12 1.96 8.14 -2.39 -0.02 1.95 16 33 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.06 1.53 6.87 -2.39 -0.02 1.51 16 35 H 0.12 1.90 7.94 -2.39 -0.02 1.88 16 36 H 0.10 2.49 8.07 -2.39 -0.02 2.47 16 37 H 0.08 2.00 8.01 -2.39 -0.02 1.98 16 38 H 0.11 2.36 8.07 -2.39 -0.02 2.34 16 39 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.07 2.92 8.08 -2.39 -0.02 2.90 16 42 H 0.01 0.28 7.63 -2.39 -0.02 0.26 16 43 H -0.04 -2.20 6.46 -2.39 -0.02 -2.22 16 44 H 0.04 1.88 4.96 -2.39 -0.01 1.87 16 45 H 0.27 15.99 8.32 -92.70 -0.77 15.22 16 Total: -1.00 -79.30 345.64 0.87 -78.43 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.79 Total: 14.26 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: 4.57 Total: -8.03 kcal Atomic # 7 Polarization: -99.65 SS G_CDS: -6.31 Total: -105.96 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.05 Total: -26.20 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.88 Total: 47.49 kcal Total: -79.30 0.87 -78.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031583.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.227 kcal (2) G-P(sol) polarization free energy of solvation -79.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds