Wall clock time and date at job start Tue Mar 31 2020 01:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00100 * 2 1 3 5 5 N 1.46494 * 109.47140 * 295.00115 * 4 2 1 6 6 C 1.46881 * 124.37874 * 90.00651 * 5 4 2 7 7 C 1.54715 * 105.52203 * 196.77954 * 6 5 4 8 8 C 1.53586 * 101.50571 * 335.49703 * 7 6 5 9 9 C 1.53319 * 111.07341 * 262.65479 * 8 7 6 10 10 C 1.54501 * 104.75434 * 216.60260 * 9 8 7 11 11 C 1.54456 * 105.04756 * 359.25499 * 10 9 8 12 12 N 1.47395 * 111.07572 * 145.00250 * 8 7 6 13 13 C 1.46897 * 111.00100 * 278.33585 * 12 8 7 14 14 C 1.50696 * 109.47529 * 170.00097 * 13 12 8 15 15 H 1.08009 * 119.99894 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00618 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99359 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00423 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47367 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47142 * 119.99965 * 18 16 14 21 21 H 1.48500 * 109.47266 * 240.00184 * 18 16 14 22 22 C 1.34760 * 124.37019 * 269.69335 * 5 4 2 23 23 O 1.21285 * 125.14033 * 358.99330 * 22 5 4 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 27 27 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 28 28 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 29 29 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 31 31 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 32 32 H 1.09001 * 109.46992 * 174.99449 * 4 2 1 33 33 H 1.09005 * 110.22922 * 315.78192 * 6 5 4 34 34 H 1.08997 * 110.24308 * 77.67152 * 6 5 4 35 35 H 1.08996 * 111.02325 * 93.55387 * 7 6 5 36 36 H 1.09001 * 111.01481 * 217.40753 * 7 6 5 37 37 H 1.09004 * 110.38301 * 335.41971 * 9 8 7 38 38 H 1.08998 * 110.38580 * 97.78147 * 9 8 7 39 39 H 1.09000 * 110.32625 * 118.15299 * 10 9 8 40 40 H 1.09006 * 110.32508 * 240.36228 * 10 9 8 41 41 H 1.08997 * 110.37740 * 142.37379 * 11 10 9 42 42 H 1.08998 * 110.38319 * 264.62345 * 11 10 9 43 43 H 1.09001 * 109.47134 * 289.99940 * 13 12 8 44 44 H 1.08999 * 109.47328 * 49.99521 * 13 12 8 45 45 H 0.96998 * 119.99661 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 1.6525 -2.1327 -1.1906 6 6 0.3973 -2.6713 -1.7309 7 6 0.2280 -4.0628 -1.0760 8 6 1.6823 -4.4196 -0.7345 9 6 2.2958 -5.3225 -1.8111 10 6 3.2046 -6.3004 -1.0334 11 6 3.0692 -5.8823 0.4473 12 7 1.7593 -5.1813 0.5251 13 6 1.7107 -4.2838 1.6869 14 6 1.5442 -5.0979 2.9441 15 1 1.4804 -6.1745 2.8858 16 6 1.4733 -4.4685 4.1688 17 7 1.5515 -3.1576 4.2398 18 14 1.2662 -5.4776 5.7270 19 1 1.2043 -6.9198 5.3782 20 1 2.4196 -5.2355 6.6305 21 1 0.0096 -5.0800 6.4110 22 6 2.4043 -3.1058 -0.6393 23 8 3.4977 -2.9448 -0.1398 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6055 -0.2617 -2.1370 32 1 3.1264 -0.6442 -1.2952 33 1 -0.4374 -2.0239 -1.4617 34 1 0.4641 -2.7686 -2.8144 35 1 -0.3810 -3.9991 -0.1743 36 1 -0.1953 -4.7779 -1.7814 37 1 1.5141 -5.8689 -2.3389 38 1 2.8858 -4.7313 -2.5113 39 1 2.8617 -7.3260 -1.1702 40 1 4.2388 -6.1991 -1.3624 41 1 3.0679 -6.7616 1.0914 42 1 3.8792 -5.2087 0.7272 43 1 2.6374 -3.7128 1.7440 44 1 0.8684 -3.5998 1.5827 45 1 1.5019 -2.7148 5.1014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274032247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:19 Heat of formation + Delta-G solvation = -32.649816 kcal Electronic energy + Delta-G solvation = -24092.967924 eV Core-core repulsion = 20917.029485 eV Total energy + Delta-G solvation = -3175.938439 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.85248 -37.45581 -36.21885 -34.91857 -33.05800 -30.99257 -30.83726 -27.67203 -26.85507 -26.33315 -26.05838 -23.39131 -22.23885 -20.94920 -20.27506 -19.86477 -18.34002 -16.53716 -16.15645 -15.70609 -15.32542 -14.97909 -14.66154 -14.24905 -13.90203 -13.75118 -13.62991 -13.31605 -12.73360 -12.60909 -12.26576 -12.17597 -12.05324 -11.90424 -11.70019 -11.60796 -11.41311 -11.01860 -10.91483 -10.73097 -10.71279 -10.54561 -10.52923 -10.46041 -10.23943 -10.11295 -9.76989 -9.53638 -9.08553 -8.38271 -8.29532 -7.30294 -5.95806 -3.96739 3.08318 3.34379 3.37103 3.41356 3.46532 4.45706 4.61117 4.83831 4.92172 5.01566 5.05622 5.19575 5.23910 5.25990 5.39360 5.42175 5.50670 5.55788 5.63507 5.70882 5.72055 5.80756 5.87134 5.97224 5.99783 6.07808 6.11547 6.17144 6.26008 6.28188 6.35570 6.46121 6.50037 6.57280 6.69681 6.80421 6.97131 7.15553 7.44781 7.53770 7.80203 7.99954 8.20547 8.50944 8.73855 9.10549 9.66173 11.14938 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013456 B = 0.007483 C = 0.005493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.401239 B = 3740.723283 C = 5095.740684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 C -0.141 4.141 4 C 0.135 3.865 5 N -0.623 5.623 6 C 0.100 3.900 7 C -0.113 4.113 8 C 0.055 3.945 9 C -0.098 4.098 10 C -0.124 4.124 11 C 0.041 3.959 12 N -0.475 5.475 13 C 0.174 3.826 14 C -0.503 4.503 15 H 0.062 0.938 16 C 0.055 3.945 17 N -0.895 5.895 18 Si 0.896 3.104 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.285 1.285 22 C 0.512 3.488 23 O -0.518 6.518 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.047 0.953 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.052 0.948 43 H 0.017 0.983 44 H 0.024 0.976 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.452 3.503 -14.874 15.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.138 4.138 3 C -0.199 4.199 4 C 0.013 3.987 5 N -0.358 5.358 6 C -0.023 4.023 7 C -0.152 4.152 8 C -0.040 4.040 9 C -0.136 4.136 10 C -0.162 4.162 11 C -0.087 4.087 12 N -0.199 5.199 13 C 0.048 3.952 14 C -0.542 4.542 15 H 0.080 0.920 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.724 3.276 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.211 1.211 22 C 0.299 3.701 23 O -0.392 6.392 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.101 0.899 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.071 0.929 43 H 0.034 0.966 44 H 0.042 0.958 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.287 3.429 -14.394 14.973 hybrid contribution 0.432 0.363 1.008 1.155 sum -1.855 3.792 -13.386 14.036 Atomic orbital electron populations 1.21874 0.95125 1.02083 1.01034 1.21561 0.96429 0.96145 0.99678 1.21741 1.00981 0.95653 1.01508 1.21358 1.00312 0.79704 0.97355 1.48405 1.20805 1.07212 1.59374 1.22243 0.86769 0.95743 0.97569 1.22518 0.95938 0.94743 1.01956 1.22118 0.95212 0.91216 0.95427 1.22076 0.98951 0.96545 0.96072 1.22386 0.98763 0.98895 0.96161 1.23032 0.91972 0.99233 0.94508 1.65585 1.29800 1.24204 1.00328 1.20057 0.97035 0.91422 0.86637 1.21119 1.49153 0.93687 0.90260 0.91953 1.24977 0.95631 0.94916 0.99101 1.69990 1.50871 1.07777 1.24838 0.86467 0.77512 0.80433 0.83158 1.19660 1.21158 1.21114 1.21452 0.85032 0.87307 0.76337 1.90678 1.20146 1.84920 1.43432 0.92067 0.92723 0.93368 0.89906 0.92441 0.92709 0.93024 0.91093 0.90588 0.90423 0.91784 0.88950 0.89411 0.90458 0.92102 0.91450 0.92062 0.90461 0.92944 0.96561 0.95799 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.58 37.16 0.32 -1.64 16 2 C -0.12 -1.78 3.13 -90.62 -0.28 -2.06 16 3 C -0.14 -1.73 9.19 37.16 0.34 -1.39 16 4 C 0.14 1.93 5.37 -4.05 -0.02 1.91 16 5 N -0.62 -10.09 2.72 -172.53 -0.47 -10.56 16 6 C 0.10 1.29 6.80 -2.93 -0.02 1.27 16 7 C -0.11 -1.70 6.29 -25.52 -0.16 -1.86 16 8 C 0.05 1.00 0.56 -132.25 -0.07 0.93 16 9 C -0.10 -1.48 6.17 -25.78 -0.16 -1.64 16 10 C -0.12 -1.99 7.01 -25.18 -0.18 -2.16 16 11 C 0.04 0.85 5.79 -2.02 -0.01 0.84 16 12 N -0.48 -10.60 5.01 -218.57 -1.10 -11.69 16 13 C 0.17 4.72 3.56 -4.98 -0.02 4.70 16 14 C -0.50 -14.65 8.98 -34.44 -0.31 -14.96 16 15 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 16 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 18 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 C 0.51 10.33 5.48 -11.23 -0.06 10.27 16 23 O -0.52 -12.54 14.82 5.55 0.08 -12.46 16 24 H 0.06 0.91 5.65 -51.93 -0.29 0.62 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.16 7.93 -51.93 -0.41 0.75 16 33 H 0.08 0.90 5.89 -51.93 -0.31 0.60 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 1.60 7.39 -51.93 -0.38 1.21 16 36 H 0.09 1.05 7.45 -51.93 -0.39 0.66 16 37 H 0.08 0.98 7.46 -51.93 -0.39 0.59 16 38 H 0.06 0.87 7.84 -51.93 -0.41 0.47 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 42 H 0.05 1.23 6.80 -51.93 -0.35 0.88 16 43 H 0.02 0.51 5.93 -51.93 -0.31 0.20 16 44 H 0.02 0.69 7.28 -51.93 -0.38 0.31 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 344.36 15.07 5.19 5.19 Total: -1.00 -33.64 344.36 -9.12 -42.76 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -7.81 Total: 0.51 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -0.73 Total: -4.30 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: -0.83 Total: -48.95 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.08 Total: -12.46 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.64 -9.12 -42.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.113 kcal (2) G-P(sol) polarization free energy of solvation -33.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds