Wall clock time and date at job start Tue Mar 31 2020 01:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00100 * 2 1 3 5 5 N 1.46494 * 109.47140 * 295.00115 * 4 2 1 6 6 C 1.46881 * 124.37874 * 90.00651 * 5 4 2 7 7 C 1.54715 * 105.52203 * 196.77954 * 6 5 4 8 8 C 1.53586 * 101.50571 * 335.49703 * 7 6 5 9 9 C 1.53319 * 111.07341 * 262.65479 * 8 7 6 10 10 C 1.54501 * 104.75434 * 216.60260 * 9 8 7 11 11 C 1.54456 * 105.04756 * 359.25499 * 10 9 8 12 12 N 1.47395 * 111.07572 * 145.00250 * 8 7 6 13 13 C 1.46897 * 111.00100 * 278.33585 * 12 8 7 14 14 C 1.50696 * 109.47529 * 170.00097 * 13 12 8 15 15 H 1.08009 * 119.99894 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00618 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99359 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00423 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47367 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47142 * 119.99965 * 18 16 14 21 21 H 1.48500 * 109.47266 * 240.00184 * 18 16 14 22 22 C 1.34760 * 124.37019 * 269.69335 * 5 4 2 23 23 O 1.21285 * 125.14033 * 358.99330 * 22 5 4 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 27 27 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 28 28 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 29 29 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 31 31 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 32 32 H 1.09001 * 109.46992 * 174.99449 * 4 2 1 33 33 H 1.09005 * 110.22922 * 315.78192 * 6 5 4 34 34 H 1.08997 * 110.24308 * 77.67152 * 6 5 4 35 35 H 1.08996 * 111.02325 * 93.55387 * 7 6 5 36 36 H 1.09001 * 111.01481 * 217.40753 * 7 6 5 37 37 H 1.09004 * 110.38301 * 335.41971 * 9 8 7 38 38 H 1.08998 * 110.38580 * 97.78147 * 9 8 7 39 39 H 1.09000 * 110.32625 * 118.15299 * 10 9 8 40 40 H 1.09006 * 110.32508 * 240.36228 * 10 9 8 41 41 H 1.08997 * 110.37740 * 142.37379 * 11 10 9 42 42 H 1.08998 * 110.38319 * 264.62345 * 11 10 9 43 43 H 1.09001 * 109.47134 * 289.99940 * 13 12 8 44 44 H 1.08999 * 109.47328 * 49.99521 * 13 12 8 45 45 H 0.96998 * 119.99661 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 1.6525 -2.1327 -1.1906 6 6 0.3973 -2.6713 -1.7309 7 6 0.2280 -4.0628 -1.0760 8 6 1.6823 -4.4196 -0.7345 9 6 2.2958 -5.3225 -1.8111 10 6 3.2046 -6.3004 -1.0334 11 6 3.0692 -5.8823 0.4473 12 7 1.7593 -5.1813 0.5251 13 6 1.7107 -4.2838 1.6869 14 6 1.5442 -5.0979 2.9441 15 1 1.4804 -6.1745 2.8858 16 6 1.4733 -4.4685 4.1688 17 7 1.5515 -3.1576 4.2398 18 14 1.2662 -5.4776 5.7270 19 1 1.2043 -6.9198 5.3782 20 1 2.4196 -5.2355 6.6305 21 1 0.0096 -5.0800 6.4110 22 6 2.4043 -3.1058 -0.6393 23 8 3.4977 -2.9448 -0.1398 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6055 -0.2617 -2.1370 32 1 3.1264 -0.6442 -1.2952 33 1 -0.4374 -2.0239 -1.4617 34 1 0.4641 -2.7686 -2.8144 35 1 -0.3810 -3.9991 -0.1743 36 1 -0.1953 -4.7779 -1.7814 37 1 1.5141 -5.8689 -2.3389 38 1 2.8858 -4.7313 -2.5113 39 1 2.8617 -7.3260 -1.1702 40 1 4.2388 -6.1991 -1.3624 41 1 3.0679 -6.7616 1.0914 42 1 3.8792 -5.2087 0.7272 43 1 2.6374 -3.7128 1.7440 44 1 0.8684 -3.5998 1.5827 45 1 1.5019 -2.7148 5.1014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274032247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:18 Heat of formation + Delta-G solvation = -56.563089 kcal Electronic energy + Delta-G solvation = -24094.004881 eV Core-core repulsion = 20917.029485 eV Total energy + Delta-G solvation = -3176.975396 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.30192 -38.88878 -37.76269 -36.23799 -35.16058 -32.80050 -32.15897 -28.98127 -28.39723 -27.98011 -27.32585 -24.94781 -24.05048 -22.30183 -21.79420 -21.15009 -19.82323 -18.55712 -17.73511 -17.24791 -16.71023 -16.47885 -16.24494 -15.87568 -15.48586 -15.25121 -15.09641 -14.55098 -14.33638 -13.90827 -13.84810 -13.74619 -13.46680 -13.27366 -13.08146 -12.93233 -12.78696 -12.70070 -12.51914 -12.29363 -12.18308 -12.03505 -11.91186 -11.88227 -11.78324 -11.68905 -11.46144 -11.32243 -10.94522 -10.65682 -9.62431 -9.13849 -8.24206 -6.35715 1.34629 1.36294 1.50319 1.56032 2.12844 2.35645 3.06900 3.14172 3.54747 3.61742 3.72291 3.86162 3.91864 3.96984 4.08327 4.22929 4.27560 4.37188 4.43630 4.57923 4.62844 4.67398 4.73372 4.75612 4.79345 4.88652 4.92360 4.95101 4.95928 5.07412 5.09027 5.12439 5.20023 5.21823 5.27713 5.31660 5.37601 5.39618 5.58358 5.72585 5.96013 6.10947 6.15756 6.43953 6.80249 7.23566 7.33641 8.87040 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013456 B = 0.007483 C = 0.005493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.401239 B = 3740.723283 C = 5095.740684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.118 4.118 3 C -0.134 4.134 4 C 0.133 3.867 5 N -0.619 5.619 6 C 0.099 3.901 7 C -0.110 4.110 8 C 0.041 3.959 9 C -0.090 4.090 10 C -0.114 4.114 11 C 0.036 3.964 12 N -0.479 5.479 13 C 0.206 3.794 14 C -0.525 4.525 15 H 0.063 0.937 16 C -0.002 4.002 17 N -0.934 5.934 18 Si 0.973 3.027 19 H -0.259 1.259 20 H -0.281 1.281 21 H -0.273 1.273 22 C 0.495 3.505 23 O -0.577 6.577 24 H 0.043 0.957 25 H 0.044 0.956 26 H 0.089 0.911 27 H 0.012 0.988 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.121 0.879 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.058 0.942 36 H 0.131 0.869 37 H 0.118 0.882 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.010 0.990 43 H -0.034 1.034 44 H -0.006 1.006 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.420 2.800 -17.739 18.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.138 4.138 3 C -0.192 4.192 4 C 0.011 3.989 5 N -0.352 5.352 6 C -0.022 4.022 7 C -0.148 4.148 8 C -0.053 4.053 9 C -0.128 4.128 10 C -0.152 4.152 11 C -0.092 4.092 12 N -0.202 5.202 13 C 0.079 3.921 14 C -0.563 4.563 15 H 0.081 0.919 16 C -0.200 4.200 17 N -0.574 5.574 18 Si 0.797 3.203 19 H -0.183 1.183 20 H -0.207 1.207 21 H -0.199 1.199 22 C 0.282 3.718 23 O -0.457 6.457 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.108 0.892 27 H 0.031 0.969 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.107 0.893 31 H 0.139 0.861 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.130 0.870 35 H 0.077 0.923 36 H 0.149 0.851 37 H 0.136 0.864 38 H 0.091 0.909 39 H 0.115 0.885 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.028 0.972 43 H -0.016 1.016 44 H 0.012 0.988 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.301 2.733 -17.305 18.040 hybrid contribution 1.054 0.648 1.893 2.262 sum -3.247 3.381 -15.412 16.109 Atomic orbital electron populations 1.21835 0.93587 1.01439 1.02626 1.21506 0.97693 0.97375 0.97192 1.21698 1.00594 0.93785 1.03127 1.21536 0.99751 0.78904 0.98690 1.48577 1.21281 1.07468 1.57903 1.22576 0.85469 0.94434 0.99763 1.22589 0.93027 0.97297 1.01839 1.22470 0.97648 0.90813 0.94386 1.22165 0.99768 0.95824 0.95010 1.22365 1.00088 1.00684 0.92045 1.23035 0.90048 0.97716 0.98431 1.65481 1.30393 1.23791 1.00568 1.19438 0.93066 0.90901 0.88697 1.21476 1.49412 0.93857 0.91578 0.91906 1.26010 0.94848 0.96107 1.03045 1.70155 1.51532 1.09821 1.25926 0.85277 0.77796 0.79090 0.78118 1.18313 1.20695 1.19870 1.21895 0.84734 0.89131 0.76022 1.90636 1.22928 1.85986 1.46102 0.93793 0.93641 0.89180 0.96938 0.92762 0.93383 0.89343 0.86057 0.92416 0.88767 0.87027 0.92281 0.85052 0.86391 0.90918 0.88525 0.91080 0.91270 0.97167 1.01618 0.98821 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 8.58 71.98 0.62 -3.05 16 2 C -0.12 -3.68 3.13 -10.79 -0.03 -3.71 16 3 C -0.13 -3.25 9.19 71.98 0.66 -2.59 16 4 C 0.13 3.72 5.37 86.38 0.46 4.19 16 5 N -0.62 -19.88 2.72 -818.15 -2.22 -22.10 16 6 C 0.10 2.25 6.80 86.89 0.59 2.84 16 7 C -0.11 -3.07 6.29 31.38 0.20 -2.87 16 8 C 0.04 1.49 0.56 2.84 0.00 1.49 16 9 C -0.09 -2.45 6.17 31.21 0.19 -2.25 16 10 C -0.11 -3.47 7.01 31.60 0.22 -3.25 16 11 C 0.04 1.57 5.79 86.44 0.50 2.07 16 12 N -0.48 -22.22 5.01 -845.41 -4.24 -26.46 16 13 C 0.21 12.04 3.56 85.56 0.30 12.35 16 14 C -0.52 -32.17 8.98 25.60 0.23 -31.94 16 15 H 0.06 3.75 7.81 -2.91 -0.02 3.72 16 16 C 0.00 -0.15 5.46 84.65 0.46 0.32 16 17 N -0.93 -60.48 13.29 21.45 0.28 -60.20 16 18 Si 0.97 46.95 29.54 68.60 2.03 48.98 16 19 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 20 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 21 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 22 C 0.49 20.84 5.48 87.51 0.48 21.32 16 23 O -0.58 -30.52 14.82 -3.04 -0.05 -30.56 16 24 H 0.04 1.30 5.65 -2.39 -0.01 1.29 16 25 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.12 2.21 8.14 -2.38 -0.02 2.20 16 32 H 0.06 1.83 7.93 -2.39 -0.02 1.81 16 33 H 0.09 1.88 5.89 -2.38 -0.01 1.87 16 34 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.06 2.06 7.39 -2.39 -0.02 2.04 16 36 H 0.13 2.51 7.45 -2.39 -0.02 2.49 16 37 H 0.12 2.30 7.46 -2.38 -0.02 2.28 16 38 H 0.07 1.85 7.84 -2.39 -0.02 1.83 16 39 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 41 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 42 H 0.01 0.51 6.80 -2.39 -0.02 0.50 16 43 H -0.03 -2.31 5.93 -2.39 -0.01 -2.32 16 44 H -0.01 -0.39 7.28 -2.39 -0.02 -0.41 16 45 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -83.97 344.36 1.64 -82.33 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.95 Total: 13.11 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: 4.89 Total: -5.10 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -6.18 Total: -108.76 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -0.05 Total: -30.56 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -83.97 1.64 -82.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.769 kcal (2) G-P(sol) polarization free energy of solvation -83.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds