Wall clock time and date at job start Tue Mar 31 2020 01:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47338 * 2 1 4 4 C 1.52999 * 109.47438 * 120.00279 * 2 1 3 5 5 N 1.46506 * 109.46967 * 64.99452 * 4 2 1 6 6 C 1.46877 * 124.37531 * 269.72674 * 5 4 2 7 7 C 1.54853 * 105.44263 * 163.10545 * 6 5 4 8 8 C 1.53622 * 101.44782 * 24.83386 * 7 6 5 9 9 C 1.53892 * 110.67942 * 96.40096 * 8 7 6 10 10 C 1.55320 * 101.53843 * 156.79883 * 9 8 7 11 11 C 1.54409 * 103.13290 * 325.41625 * 10 9 8 12 12 N 1.46713 * 111.40422 * 214.19604 * 8 7 6 13 13 C 1.46906 * 111.00292 * 94.57432 * 12 8 7 14 14 C 1.50701 * 109.47045 * 190.00403 * 13 12 8 15 15 H 1.07998 * 120.00339 * 359.97438 * 14 13 12 16 16 C 1.37883 * 119.99406 * 180.02562 * 14 13 12 17 17 N 1.31505 * 120.00301 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99507 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47331 * 59.99982 * 18 16 14 20 20 H 1.48505 * 109.46884 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47459 * 299.99737 * 18 16 14 22 22 C 1.34746 * 124.37146 * 90.03137 * 5 4 2 23 23 O 1.21281 * 125.13283 * 0.99486 * 22 5 4 24 24 H 1.08999 * 109.47231 * 59.99935 * 1 2 3 25 25 H 1.09001 * 109.47357 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46577 * 300.00210 * 1 2 3 27 27 H 1.09010 * 109.46910 * 239.99827 * 2 1 3 28 28 H 1.09008 * 109.47421 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47012 * 300.00199 * 3 2 1 30 30 H 1.08997 * 109.47546 * 59.99852 * 3 2 1 31 31 H 1.08994 * 109.46812 * 304.99950 * 4 2 1 32 32 H 1.08997 * 109.47178 * 184.99573 * 4 2 1 33 33 H 1.09003 * 110.23448 * 282.23038 * 6 5 4 34 34 H 1.09002 * 110.23662 * 44.20074 * 6 5 4 35 35 H 1.08994 * 111.21107 * 266.73133 * 7 6 5 36 36 H 1.09002 * 110.92318 * 142.81069 * 7 6 5 37 37 H 1.09000 * 111.01195 * 274.86260 * 9 8 7 38 38 H 1.09003 * 111.01120 * 38.73820 * 9 8 7 39 39 H 1.09000 * 110.68787 * 207.00227 * 10 9 8 40 40 H 1.08999 * 110.83013 * 83.89564 * 10 9 8 41 41 H 1.08999 * 109.89478 * 262.79496 * 11 10 9 42 42 H 1.09001 * 109.89228 * 141.58740 * 11 10 9 43 43 H 1.08998 * 109.46581 * 310.00388 * 13 12 8 44 44 H 1.09002 * 109.46637 * 70.00050 * 13 12 8 45 45 H 0.97000 * 120.00049 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1905 6 6 0.3998 -2.6722 1.7358 7 6 0.2278 -4.0626 1.0760 8 6 1.6822 -4.4201 0.7346 9 6 2.2944 -5.3110 1.8299 10 6 3.4349 -6.0217 1.0511 11 6 2.8388 -6.1955 -0.3627 12 7 1.7659 -5.1912 -0.5108 13 6 2.0233 -4.3112 -1.6587 14 6 1.8596 -5.0922 -2.9370 15 1 1.5916 -6.1378 -2.9006 16 6 2.0530 -4.4720 -4.1533 17 7 2.3798 -3.1990 -4.1977 18 14 1.8508 -5.4403 -5.7378 19 1 0.4659 -5.9696 -5.8212 20 1 2.1121 -4.5509 -6.8981 21 1 2.8144 -6.5701 -5.7540 22 6 2.4017 -3.1051 0.6344 23 8 3.4926 -2.9431 0.1298 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8901 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 1.6055 -0.2618 2.1369 32 1 3.1264 -0.6444 1.2950 33 1 0.4723 -2.7725 2.8187 34 1 -0.4362 -2.0246 1.4716 35 1 -0.3810 -3.9985 0.1742 36 1 -0.1955 -4.7782 1.7808 37 1 2.6945 -4.7086 2.6455 38 1 1.5654 -6.0321 2.1999 39 1 3.6592 -6.9911 1.4962 40 1 4.3286 -5.3986 1.0182 41 1 2.4256 -7.1984 -0.4704 42 1 3.6106 -6.0273 -1.1138 43 1 1.3160 -3.4819 -1.6464 44 1 3.0399 -3.9227 -1.5977 45 1 2.5162 -2.7629 -5.0533 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274032249.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:22 Heat of formation + Delta-G solvation = -30.297028 kcal Electronic energy + Delta-G solvation = -24108.912866 eV Core-core repulsion = 20933.076451 eV Total energy + Delta-G solvation = -3175.836414 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.83046 -37.48180 -36.18909 -34.94658 -32.98249 -30.86901 -30.85123 -27.68132 -26.86881 -26.25172 -26.03935 -23.41919 -22.22643 -20.97048 -20.37750 -19.77311 -18.28516 -16.42729 -16.06446 -15.66503 -15.54172 -14.97811 -14.76126 -14.26097 -13.89942 -13.52047 -13.42838 -13.17797 -12.81685 -12.60628 -12.41317 -12.18063 -12.05998 -11.81775 -11.66153 -11.59130 -11.41601 -11.04307 -10.98869 -10.77435 -10.69199 -10.63524 -10.58677 -10.45598 -10.21884 -10.04740 -9.70992 -9.32830 -9.09022 -8.36289 -8.26620 -7.15155 -5.91668 -3.93270 3.11329 3.38374 3.39640 3.41911 3.44895 4.47461 4.65369 4.84592 4.87826 5.02771 5.06425 5.18584 5.24477 5.25777 5.41955 5.42608 5.50818 5.56472 5.65150 5.71193 5.74897 5.81449 5.87578 5.96163 5.99031 6.06025 6.09852 6.13430 6.23699 6.28265 6.38185 6.45581 6.48547 6.58161 6.74309 6.80089 7.00345 7.23459 7.48799 7.67121 7.86883 8.08252 8.27577 8.55819 8.79755 9.14326 9.69119 11.18407 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013663 B = 0.007442 C = 0.005508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.877242 B = 3761.771318 C = 5082.442448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 C -0.141 4.141 4 C 0.136 3.864 5 N -0.624 5.624 6 C 0.101 3.899 7 C -0.113 4.113 8 C 0.066 3.934 9 C -0.104 4.104 10 C -0.142 4.142 11 C 0.053 3.947 12 N -0.496 5.496 13 C 0.178 3.822 14 C -0.507 4.507 15 H 0.060 0.940 16 C 0.056 3.944 17 N -0.893 5.893 18 Si 0.896 3.104 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.278 1.278 22 C 0.512 3.488 23 O -0.510 6.510 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.048 0.952 27 H 0.083 0.917 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.020 0.980 44 H 0.026 0.974 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.061 3.477 14.893 15.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.139 4.139 3 C -0.199 4.199 4 C 0.014 3.986 5 N -0.360 5.360 6 C -0.023 4.023 7 C -0.151 4.151 8 C -0.028 4.028 9 C -0.142 4.142 10 C -0.180 4.180 11 C -0.075 4.075 12 N -0.220 5.220 13 C 0.053 3.947 14 C -0.546 4.546 15 H 0.079 0.921 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.724 3.276 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 C 0.298 3.702 23 O -0.383 6.383 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.102 0.898 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.038 0.962 44 H 0.044 0.956 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.868 3.531 14.367 15.292 hybrid contribution 0.536 0.154 -0.935 1.089 sum -3.332 3.685 13.431 14.321 Atomic orbital electron populations 1.21877 0.95216 1.02011 1.01027 1.21568 0.96320 0.96186 0.99806 1.21738 1.01057 0.95630 1.01454 1.21341 1.00334 0.79703 0.97263 1.48376 1.21126 1.07219 1.59297 1.22259 0.86838 0.95720 0.97469 1.22529 0.96189 0.94667 1.01713 1.22034 0.95110 0.91468 0.94229 1.22472 0.98048 0.97685 0.96036 1.22890 0.98238 1.00106 0.96812 1.22727 0.93376 0.96499 0.94906 1.63875 1.43150 1.13901 1.01080 1.20175 0.96867 0.91322 0.86366 1.21097 1.46553 0.96907 0.90069 0.92148 1.24971 0.95559 0.94939 0.99075 1.69980 1.47826 1.10006 1.25465 0.86605 0.78570 0.79721 0.82738 1.20272 1.21445 1.20319 1.21290 0.85071 0.87157 0.76638 1.90695 1.20232 1.84815 1.42584 0.92801 0.92107 0.93329 0.89837 0.92653 0.92479 0.93053 0.91144 0.90584 0.91847 0.90532 0.89061 0.89602 0.91710 0.90063 0.91490 0.91452 0.91647 0.91744 0.96154 0.95589 0.93068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.58 37.16 0.32 -1.60 16 2 C -0.12 -1.79 3.13 -90.62 -0.28 -2.07 16 3 C -0.14 -1.73 9.19 37.15 0.34 -1.39 16 4 C 0.14 1.95 5.37 -4.04 -0.02 1.93 16 5 N -0.62 -10.12 2.71 -172.44 -0.47 -10.58 16 6 C 0.10 1.28 6.81 -2.86 -0.02 1.26 16 7 C -0.11 -1.66 6.47 -25.43 -0.16 -1.82 16 8 C 0.07 1.21 0.68 -132.29 -0.09 1.12 16 9 C -0.10 -1.57 5.97 -25.04 -0.15 -1.72 16 10 C -0.14 -2.36 6.85 -24.76 -0.17 -2.53 16 11 C 0.05 1.08 6.41 -2.64 -0.02 1.07 16 12 N -0.50 -11.05 4.84 -219.62 -1.06 -12.12 16 13 C 0.18 4.87 3.33 -4.97 -0.02 4.86 16 14 C -0.51 -14.86 8.63 -34.44 -0.30 -15.15 16 15 H 0.06 1.74 7.77 -52.49 -0.41 1.33 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -27.71 13.29 55.43 0.74 -26.98 16 18 Si 0.90 22.39 29.54 -169.99 -5.02 17.37 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 C 0.51 10.40 5.36 -11.23 -0.06 10.34 16 23 O -0.51 -12.58 15.30 5.56 0.08 -12.49 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.88 5.67 -51.93 -0.29 0.58 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 1.66 8.14 -51.92 -0.42 1.24 16 28 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.18 7.93 -51.93 -0.41 0.77 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.87 5.92 -51.93 -0.31 0.56 16 35 H 0.09 1.53 8.12 -51.93 -0.42 1.11 16 36 H 0.09 1.01 7.63 -51.93 -0.40 0.61 16 37 H 0.06 0.90 8.00 -51.93 -0.42 0.49 16 38 H 0.08 1.05 7.78 -51.93 -0.40 0.64 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.06 1.50 7.30 -51.93 -0.38 1.12 16 43 H 0.02 0.61 7.73 -51.93 -0.40 0.21 16 44 H 0.03 0.81 5.80 -51.93 -0.30 0.51 16 45 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 346.75 15.07 5.23 5.23 Total: -1.00 -33.93 346.75 -9.16 -43.08 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -7.93 Total: 0.66 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -0.73 Total: -4.17 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: -0.79 Total: -49.68 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.08 Total: -12.49 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.93 -9.16 -43.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032249.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.787 kcal (2) G-P(sol) polarization free energy of solvation -33.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds