Wall clock time and date at job start Tue Mar 31 2020 01:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47338 * 2 1 4 4 C 1.52999 * 109.47438 * 120.00279 * 2 1 3 5 5 N 1.46506 * 109.46967 * 64.99452 * 4 2 1 6 6 C 1.46877 * 124.37531 * 269.72674 * 5 4 2 7 7 C 1.54853 * 105.44263 * 163.10545 * 6 5 4 8 8 C 1.53622 * 101.44782 * 24.83386 * 7 6 5 9 9 C 1.53892 * 110.67942 * 96.40096 * 8 7 6 10 10 C 1.55320 * 101.53843 * 156.79883 * 9 8 7 11 11 C 1.54409 * 103.13290 * 325.41625 * 10 9 8 12 12 N 1.46713 * 111.40422 * 214.19604 * 8 7 6 13 13 C 1.46906 * 111.00292 * 94.57432 * 12 8 7 14 14 C 1.50701 * 109.47045 * 190.00403 * 13 12 8 15 15 H 1.07998 * 120.00339 * 359.97438 * 14 13 12 16 16 C 1.37883 * 119.99406 * 180.02562 * 14 13 12 17 17 N 1.31505 * 120.00301 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99507 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47331 * 59.99982 * 18 16 14 20 20 H 1.48505 * 109.46884 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47459 * 299.99737 * 18 16 14 22 22 C 1.34746 * 124.37146 * 90.03137 * 5 4 2 23 23 O 1.21281 * 125.13283 * 0.99486 * 22 5 4 24 24 H 1.08999 * 109.47231 * 59.99935 * 1 2 3 25 25 H 1.09001 * 109.47357 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46577 * 300.00210 * 1 2 3 27 27 H 1.09010 * 109.46910 * 239.99827 * 2 1 3 28 28 H 1.09008 * 109.47421 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47012 * 300.00199 * 3 2 1 30 30 H 1.08997 * 109.47546 * 59.99852 * 3 2 1 31 31 H 1.08994 * 109.46812 * 304.99950 * 4 2 1 32 32 H 1.08997 * 109.47178 * 184.99573 * 4 2 1 33 33 H 1.09003 * 110.23448 * 282.23038 * 6 5 4 34 34 H 1.09002 * 110.23662 * 44.20074 * 6 5 4 35 35 H 1.08994 * 111.21107 * 266.73133 * 7 6 5 36 36 H 1.09002 * 110.92318 * 142.81069 * 7 6 5 37 37 H 1.09000 * 111.01195 * 274.86260 * 9 8 7 38 38 H 1.09003 * 111.01120 * 38.73820 * 9 8 7 39 39 H 1.09000 * 110.68787 * 207.00227 * 10 9 8 40 40 H 1.08999 * 110.83013 * 83.89564 * 10 9 8 41 41 H 1.08999 * 109.89478 * 262.79496 * 11 10 9 42 42 H 1.09001 * 109.89228 * 141.58740 * 11 10 9 43 43 H 1.08998 * 109.46581 * 310.00388 * 13 12 8 44 44 H 1.09002 * 109.46637 * 70.00050 * 13 12 8 45 45 H 0.97000 * 120.00049 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1905 6 6 0.3998 -2.6722 1.7358 7 6 0.2278 -4.0626 1.0760 8 6 1.6822 -4.4201 0.7346 9 6 2.2944 -5.3110 1.8299 10 6 3.4349 -6.0217 1.0511 11 6 2.8388 -6.1955 -0.3627 12 7 1.7659 -5.1912 -0.5108 13 6 2.0233 -4.3112 -1.6587 14 6 1.8596 -5.0922 -2.9370 15 1 1.5916 -6.1378 -2.9006 16 6 2.0530 -4.4720 -4.1533 17 7 2.3798 -3.1990 -4.1977 18 14 1.8508 -5.4403 -5.7378 19 1 0.4659 -5.9696 -5.8212 20 1 2.1121 -4.5509 -6.8981 21 1 2.8144 -6.5701 -5.7540 22 6 2.4017 -3.1051 0.6344 23 8 3.4926 -2.9431 0.1298 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8901 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 1.6055 -0.2618 2.1369 32 1 3.1264 -0.6444 1.2950 33 1 0.4723 -2.7725 2.8187 34 1 -0.4362 -2.0246 1.4716 35 1 -0.3810 -3.9985 0.1742 36 1 -0.1955 -4.7782 1.7808 37 1 2.6945 -4.7086 2.6455 38 1 1.5654 -6.0321 2.1999 39 1 3.6592 -6.9911 1.4962 40 1 4.3286 -5.3986 1.0182 41 1 2.4256 -7.1984 -0.4704 42 1 3.6106 -6.0273 -1.1138 43 1 1.3160 -3.4819 -1.6464 44 1 3.0399 -3.9227 -1.5977 45 1 2.5162 -2.7629 -5.0533 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274032249.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:22 Heat of formation + Delta-G solvation = -54.497030 kcal Electronic energy + Delta-G solvation = -24109.962256 eV Core-core repulsion = 20933.076451 eV Total energy + Delta-G solvation = -3176.885805 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.28221 -38.91744 -37.74288 -36.26603 -35.10522 -32.69939 -32.15477 -28.98920 -28.33912 -27.98067 -27.29327 -24.97200 -24.04991 -22.27670 -21.87824 -21.10528 -19.77611 -18.45482 -17.69346 -17.16220 -16.95550 -16.52213 -16.30136 -15.91497 -15.29850 -15.12629 -14.82892 -14.56260 -14.37218 -13.92720 -13.91034 -13.71721 -13.50185 -13.22733 -13.07553 -12.94753 -12.73860 -12.71542 -12.55082 -12.37405 -12.18459 -12.07356 -12.00417 -11.85627 -11.72077 -11.65759 -11.41165 -11.31745 -10.83511 -10.65040 -9.59964 -8.97848 -8.21532 -6.34029 1.34151 1.39396 1.47160 1.58925 2.15281 2.36240 3.08990 3.15927 3.54853 3.59278 3.78630 3.88005 3.93241 3.94869 4.09036 4.19460 4.24831 4.38619 4.44634 4.59222 4.64011 4.67589 4.73945 4.76205 4.83084 4.90290 4.92995 4.95345 4.97001 5.04082 5.09324 5.13870 5.21008 5.26627 5.31737 5.33380 5.38824 5.44372 5.61187 5.75904 6.01725 6.16800 6.22221 6.53119 6.83094 7.28504 7.35171 8.88710 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013663 B = 0.007442 C = 0.005508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.877242 B = 3761.771318 C = 5082.442448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C -0.135 4.135 4 C 0.133 3.867 5 N -0.620 5.620 6 C 0.099 3.901 7 C -0.107 4.107 8 C 0.049 3.951 9 C -0.090 4.090 10 C -0.134 4.134 11 C 0.048 3.952 12 N -0.501 5.501 13 C 0.211 3.789 14 C -0.528 4.528 15 H 0.063 0.937 16 C -0.004 4.004 17 N -0.935 5.935 18 Si 0.973 3.027 19 H -0.262 1.262 20 H -0.283 1.283 21 H -0.267 1.267 22 C 0.495 3.505 23 O -0.574 6.574 24 H 0.046 0.954 25 H 0.045 0.955 26 H 0.089 0.911 27 H 0.012 0.988 28 H 0.045 0.955 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.121 0.879 32 H 0.055 0.945 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.130 0.870 37 H 0.084 0.916 38 H 0.120 0.880 39 H 0.107 0.893 40 H 0.040 0.960 41 H 0.085 0.915 42 H 0.018 0.982 43 H -0.018 1.018 44 H -0.022 1.022 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.391 2.662 17.760 19.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.138 4.138 3 C -0.192 4.192 4 C 0.012 3.988 5 N -0.354 5.354 6 C -0.022 4.022 7 C -0.145 4.145 8 C -0.045 4.045 9 C -0.128 4.128 10 C -0.173 4.173 11 C -0.080 4.080 12 N -0.225 5.225 13 C 0.085 3.915 14 C -0.566 4.566 15 H 0.082 0.918 16 C -0.201 4.201 17 N -0.575 5.575 18 Si 0.797 3.203 19 H -0.186 1.186 20 H -0.209 1.209 21 H -0.192 1.192 22 C 0.282 3.718 23 O -0.453 6.453 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.108 0.892 27 H 0.030 0.970 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.107 0.893 31 H 0.139 0.861 32 H 0.073 0.927 33 H 0.128 0.872 34 H 0.113 0.887 35 H 0.080 0.920 36 H 0.148 0.852 37 H 0.102 0.898 38 H 0.138 0.862 39 H 0.125 0.875 40 H 0.059 0.941 41 H 0.103 0.897 42 H 0.037 0.963 43 H 0.000 1.000 44 H -0.004 1.004 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.251 2.720 17.284 18.579 hybrid contribution 1.270 0.460 -1.802 2.251 sum -4.981 3.179 15.482 16.571 Atomic orbital electron populations 1.21837 0.93396 1.01534 1.02701 1.21511 0.97824 0.97298 0.97206 1.21697 1.00522 0.93876 1.03133 1.21516 0.99626 0.78990 0.98690 1.48549 1.21653 1.07418 1.57789 1.22609 0.85506 0.94518 0.99598 1.22594 0.93075 0.97119 1.01755 1.22418 0.97684 0.90873 0.93477 1.22550 0.97722 0.97619 0.94930 1.22825 0.97730 1.01991 0.94734 1.22777 0.92124 0.96710 0.96379 1.63814 1.43490 1.13689 1.01474 1.19500 0.92818 0.90678 0.88526 1.21484 1.46621 0.97168 0.91325 0.91837 1.26032 0.94791 0.95968 1.03327 1.70166 1.48741 1.12089 1.26493 0.85387 0.79321 0.78183 0.77425 1.18630 1.20862 1.19223 1.21793 0.84713 0.89089 0.76206 1.90653 1.23193 1.85953 1.45465 0.93516 0.93622 0.89186 0.96969 0.93571 0.92716 0.89326 0.86055 0.92689 0.87183 0.88660 0.92039 0.85195 0.89786 0.86216 0.87459 0.94133 0.89720 0.96348 1.00012 1.00398 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 8.58 71.98 0.62 -2.93 16 2 C -0.12 -3.69 3.13 -10.80 -0.03 -3.73 16 3 C -0.13 -3.29 9.19 71.98 0.66 -2.63 16 4 C 0.13 3.77 5.37 86.38 0.46 4.23 16 5 N -0.62 -19.93 2.71 -817.87 -2.22 -22.15 16 6 C 0.10 2.19 6.81 86.94 0.59 2.79 16 7 C -0.11 -2.92 6.47 31.44 0.20 -2.72 16 8 C 0.05 1.79 0.68 3.18 0.00 1.79 16 9 C -0.09 -2.46 5.97 31.69 0.19 -2.27 16 10 C -0.13 -4.37 6.85 31.87 0.22 -4.15 16 11 C 0.05 2.02 6.41 86.63 0.56 2.58 16 12 N -0.50 -23.17 4.84 -848.75 -4.11 -27.28 16 13 C 0.21 12.54 3.33 85.56 0.29 12.82 16 14 C -0.53 -32.58 8.63 25.60 0.22 -32.36 16 15 H 0.06 3.78 7.77 -2.91 -0.02 3.76 16 16 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 17 N -0.93 -61.63 13.29 21.45 0.28 -61.34 16 18 Si 0.97 47.30 29.54 68.60 2.03 49.33 16 19 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 21 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 22 C 0.49 21.04 5.36 87.52 0.47 21.51 16 23 O -0.57 -31.07 15.30 -3.03 -0.05 -31.12 16 24 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.04 1.30 5.67 -2.39 -0.01 1.29 16 26 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 28 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 29 H 0.05 1.34 8.14 -2.39 -0.02 1.33 16 30 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.12 2.22 8.14 -2.39 -0.02 2.21 16 32 H 0.05 1.78 7.93 -2.39 -0.02 1.76 16 33 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.10 1.81 5.92 -2.39 -0.01 1.80 16 35 H 0.06 2.05 8.12 -2.39 -0.02 2.03 16 36 H 0.13 2.38 7.63 -2.39 -0.02 2.36 16 37 H 0.08 2.02 8.00 -2.39 -0.02 2.00 16 38 H 0.12 2.39 7.78 -2.39 -0.02 2.38 16 39 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 40 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 42 H 0.02 0.91 7.30 -2.39 -0.02 0.89 16 43 H -0.02 -1.19 7.73 -2.39 -0.02 -1.21 16 44 H -0.02 -1.49 5.80 -2.39 -0.01 -1.50 16 45 H 0.26 16.21 8.31 -92.71 -0.77 15.44 16 Total: -1.00 -85.65 346.75 1.79 -83.87 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 0.94 Total: 13.51 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: 4.91 Total: -4.82 kcal Atomic # 7 Polarization: -104.73 SS G_CDS: -6.04 Total: -110.77 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -0.05 Total: -31.12 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -85.65 1.79 -83.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032249.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.368 kcal (2) G-P(sol) polarization free energy of solvation -85.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds