Wall clock time and date at job start Tue Mar 31 2020 02:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47286 * 2 1 4 4 H 1.09008 * 115.56055 * 29.29399 * 3 2 1 5 5 C 1.53000 * 117.49997 * 243.60886 * 3 2 1 6 6 C 1.53002 * 60.02940 * 252.49592 * 5 3 2 7 7 H 1.09000 * 117.49996 * 107.50493 * 6 5 3 8 8 C 1.50706 * 117.49668 * 252.51929 * 6 5 3 9 9 O 1.21277 * 120.00023 * 68.61167 * 8 6 5 10 10 N 1.34780 * 119.99945 * 248.60941 * 8 6 5 11 11 C 1.46920 * 120.62905 * 359.72150 * 10 8 6 12 12 C 1.52770 * 109.00698 * 233.58095 * 11 10 8 13 13 C 1.53034 * 109.38290 * 305.59192 * 12 11 10 14 14 C 1.53000 * 109.44816 * 181.25443 * 13 12 11 15 15 N 1.46508 * 109.45974 * 301.21790 * 13 12 11 16 16 C 1.36935 * 119.99987 * 300.06851 * 15 13 12 17 17 H 1.08000 * 119.99761 * 0.02562 * 16 15 13 18 18 C 1.38807 * 119.99916 * 180.02562 * 16 15 13 19 19 N 1.31618 * 120.00353 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99973 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47054 * 60.00075 * 20 18 16 22 22 H 1.48505 * 109.47109 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47317 * 300.00279 * 20 18 16 24 24 C 1.53037 * 109.53948 * 61.23683 * 13 12 11 25 25 C 1.46929 * 120.62796 * 179.97438 * 10 8 6 26 26 H 1.08997 * 109.47122 * 300.00432 * 1 2 3 27 27 H 1.09000 * 109.46540 * 60.00014 * 1 2 3 28 28 H 1.08994 * 109.46916 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47637 * 239.99610 * 2 1 3 30 30 H 1.09004 * 109.47028 * 119.99895 * 2 1 3 31 31 H 1.09002 * 117.49833 * 359.97438 * 5 3 2 32 32 H 1.09002 * 117.49953 * 144.99738 * 5 3 2 33 33 H 1.09000 * 109.59034 * 353.42239 * 11 10 8 34 34 H 1.09000 * 109.58582 * 113.84662 * 11 10 8 35 35 H 1.09005 * 109.56221 * 185.55355 * 12 11 10 36 36 H 1.08993 * 109.38091 * 65.51813 * 12 11 10 37 37 H 1.09000 * 109.46527 * 299.93504 * 14 13 12 38 38 H 1.08994 * 109.47229 * 59.93919 * 14 13 12 39 39 H 1.09003 * 109.46820 * 179.97438 * 14 13 12 40 40 H 0.97001 * 119.99632 * 120.07169 * 15 13 12 41 41 H 0.97001 * 120.00490 * 180.02562 * 19 18 16 42 42 H 1.09009 * 109.49930 * 178.67993 * 24 13 12 43 43 H 1.08999 * 109.52479 * 58.60246 * 24 13 12 44 44 H 1.08999 * 109.58832 * 246.15497 * 25 10 8 45 45 H 1.08995 * 109.58598 * 6.43937 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3883 2.1718 0.4812 5 6 2.8443 1.9074 -1.2157 6 6 3.5508 1.6583 0.1184 7 1 4.1815 0.7727 0.1963 8 6 4.0231 2.8629 0.8912 9 8 3.2158 3.6174 1.3910 10 7 5.3426 3.1016 1.0269 11 6 6.3326 2.1934 0.4323 12 6 7.3142 1.7494 1.5155 13 6 7.9179 2.9830 2.1904 14 6 8.9245 2.5404 3.2542 15 7 8.5985 3.8047 1.1864 16 6 9.6361 3.2812 0.4622 17 1 9.9524 2.2624 0.6309 18 6 10.2812 4.0599 -0.4887 19 7 9.8961 5.3016 -0.6939 20 14 11.6971 3.3459 -1.4762 21 1 11.2212 2.1658 -2.2418 22 1 12.2106 4.3724 -2.4185 23 1 12.7847 2.9317 -0.5537 24 6 6.8056 3.8014 2.8501 25 6 5.8183 4.2721 1.7769 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8935 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.0104 1.1855 -2.0153 32 1 2.7214 2.9425 -1.5345 33 1 5.8265 1.3206 0.0197 34 1 6.8753 2.7114 -0.3584 35 1 8.1095 1.1548 1.0658 36 1 6.7870 1.1500 2.2576 37 1 8.4182 1.9295 4.0015 38 1 9.7168 1.9576 2.7846 39 1 9.3551 3.4189 3.7349 40 1 8.3141 4.7196 1.0347 41 1 10.3467 5.8457 -1.3587 42 1 7.2390 4.6674 3.3505 43 1 6.2826 3.1835 3.5799 44 1 6.3182 4.9628 1.0978 45 1 4.9726 4.7718 2.2491 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274375568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:42 Heat of formation + Delta-G solvation = -11.079605 kcal Electronic energy + Delta-G solvation = -23007.389740 eV Core-core repulsion = 19832.386656 eV Total energy + Delta-G solvation = -3175.003084 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.17201 -38.30386 -36.74267 -34.42934 -32.43226 -32.11300 -30.73004 -29.04647 -27.80056 -24.90389 -23.94471 -23.68291 -22.85893 -21.96598 -20.57814 -19.23929 -18.04422 -17.09320 -16.95142 -15.76977 -15.16052 -14.79268 -14.73625 -14.27242 -13.98649 -13.79086 -13.69402 -13.40157 -13.12036 -12.58269 -12.44309 -12.42777 -12.21726 -12.03385 -11.54866 -11.43076 -11.26516 -11.21204 -11.13384 -10.90055 -10.79190 -10.69939 -10.34347 -10.31352 -10.24741 -9.98076 -9.67267 -9.53751 -9.39395 -8.94006 -8.16362 -6.97761 -5.78675 -3.07210 2.74116 3.29975 3.40601 3.45882 3.47052 3.85115 4.49388 4.56230 4.73204 4.77089 5.00375 5.07999 5.17324 5.29340 5.32648 5.37394 5.42990 5.57408 5.59366 5.62490 5.70069 5.75012 5.78851 5.83683 5.89426 5.97946 5.98787 6.07030 6.10541 6.20288 6.27561 6.30096 6.41822 6.46619 6.52602 6.58512 6.78158 6.88904 7.02870 7.08906 7.68402 7.82516 8.39570 8.49649 9.51065 10.08230 10.43728 11.43811 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021200 B = 0.004373 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.425661 B = 6401.870427 C = 6884.638242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.121 4.121 4 H 0.116 0.884 5 C -0.148 4.148 6 C -0.187 4.187 7 H 0.123 0.877 8 C 0.541 3.459 9 O -0.559 6.559 10 N -0.594 5.594 11 C 0.115 3.885 12 C -0.136 4.136 13 C 0.198 3.802 14 C -0.150 4.150 15 N -0.717 5.717 16 C -0.233 4.233 17 H 0.070 0.930 18 C -0.012 4.012 19 N -0.933 5.933 20 Si 0.902 3.098 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.287 1.287 24 C -0.129 4.129 25 C 0.116 3.884 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.047 0.953 37 H 0.035 0.965 38 H 0.055 0.945 39 H 0.049 0.951 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.076 0.924 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.245 -9.682 2.446 16.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.132 4.132 3 C -0.140 4.140 4 H 0.134 0.866 5 C -0.185 4.185 6 C -0.208 4.208 7 H 0.141 0.859 8 C 0.329 3.671 9 O -0.438 6.438 10 N -0.325 5.325 11 C -0.007 4.007 12 C -0.176 4.176 13 C 0.106 3.894 14 C -0.209 4.209 15 N -0.359 5.359 16 C -0.364 4.364 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.581 5.581 20 Si 0.733 3.267 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.214 1.214 24 C -0.167 4.167 25 C -0.007 4.007 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.500 -9.348 2.621 16.628 hybrid contribution 1.133 -0.118 -0.660 1.316 sum -12.367 -9.466 1.962 15.697 Atomic orbital electron populations 1.21734 0.95328 1.01446 1.02100 1.21145 0.96108 0.93853 1.02076 1.22463 0.91755 0.98407 1.01366 0.86619 1.23070 1.02006 1.03090 0.90342 1.22340 0.97007 0.99399 1.02074 0.85889 1.19580 0.82059 0.85485 0.79964 1.90630 1.53722 1.49376 1.50113 1.48013 1.05077 1.26569 1.52825 1.21676 0.89422 0.92624 0.96954 1.22245 0.98305 0.99263 0.97798 1.19526 0.90252 0.90314 0.89290 1.22220 0.99894 1.00596 0.98221 1.42508 1.38062 1.13190 1.42127 1.19069 1.07562 0.96680 1.13090 0.91240 1.24693 0.99876 0.96062 1.00143 1.69638 1.43785 1.07434 1.37223 0.86353 0.82653 0.77748 0.79918 1.21363 1.21831 1.21413 1.22085 0.96543 1.00643 0.97442 1.21573 0.97485 0.87440 0.94178 0.92551 0.92567 0.92761 0.91703 0.91514 0.87954 0.88374 0.91218 0.89253 0.90656 0.93409 0.94618 0.92565 0.93149 0.78138 0.93514 0.90832 0.92001 0.90543 0.89998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.87 37.16 0.37 -0.81 16 2 C -0.09 -0.84 6.22 -26.73 -0.17 -1.01 16 3 C -0.12 -1.39 5.25 -90.59 -0.48 -1.86 16 4 H 0.12 1.51 7.60 -51.92 -0.39 1.11 16 5 C -0.15 -1.68 9.88 -26.73 -0.26 -1.94 16 6 C -0.19 -2.43 4.86 -91.73 -0.45 -2.88 16 7 H 0.12 1.42 6.55 -51.93 -0.34 1.08 16 8 C 0.54 9.06 7.48 -10.98 -0.08 8.98 16 9 O -0.56 -10.94 15.67 5.56 0.09 -10.85 16 10 N -0.59 -10.02 2.98 -173.00 -0.52 -10.54 16 11 C 0.12 1.90 6.06 -3.93 -0.02 1.87 16 12 C -0.14 -2.27 4.69 -26.83 -0.13 -2.39 16 13 C 0.20 3.63 0.74 -131.78 -0.10 3.53 16 14 C -0.15 -2.63 8.44 37.16 0.31 -2.32 16 15 N -0.72 -16.32 4.14 -47.20 -0.20 -16.52 16 16 C -0.23 -5.91 8.68 -15.06 -0.13 -6.04 16 17 H 0.07 1.72 6.70 -52.49 -0.35 1.37 16 18 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 19 N -0.93 -26.99 13.06 55.49 0.72 -26.27 16 20 Si 0.90 21.56 29.55 -169.99 -5.02 16.54 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 24 C -0.13 -2.13 4.96 -26.59 -0.13 -2.26 16 25 C 0.12 2.01 6.16 -3.69 -0.02 1.99 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.52 7.87 -51.93 -0.41 0.11 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.10 0.96 8.03 -51.93 -0.42 0.54 16 32 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.07 0.96 5.51 -51.93 -0.29 0.67 16 34 H 0.09 1.75 7.74 -51.93 -0.40 1.35 16 35 H 0.07 1.32 7.31 -51.93 -0.38 0.94 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 1.05 7.27 -51.93 -0.38 0.67 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.38 9.53 6.46 -40.82 -0.26 9.26 16 41 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.07 1.20 8.14 -51.92 -0.42 0.77 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.08 1.47 6.94 -51.93 -0.36 1.11 16 45 H 0.08 1.43 7.00 -51.93 -0.36 1.06 16 LS Contribution 350.23 15.07 5.28 5.28 Total: -1.00 -29.34 350.23 -8.73 -38.07 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -7.71 Total: 9.85 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -1.38 Total: -5.57 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.01 Total: -53.32 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.34 -8.73 -38.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274375568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.990 kcal (2) G-P(sol) polarization free energy of solvation -29.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds