Wall clock time and date at job start Tue Mar 31 2020 02:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47286 * 2 1 4 4 H 1.09008 * 115.56055 * 29.29399 * 3 2 1 5 5 C 1.53000 * 117.49997 * 243.60886 * 3 2 1 6 6 C 1.53002 * 60.02940 * 252.49592 * 5 3 2 7 7 H 1.09000 * 117.49996 * 107.50493 * 6 5 3 8 8 C 1.50706 * 117.49668 * 252.51929 * 6 5 3 9 9 O 1.21277 * 120.00023 * 68.61167 * 8 6 5 10 10 N 1.34780 * 119.99945 * 248.60941 * 8 6 5 11 11 C 1.46920 * 120.62905 * 359.72150 * 10 8 6 12 12 C 1.52770 * 109.00698 * 233.58095 * 11 10 8 13 13 C 1.53034 * 109.38290 * 305.59192 * 12 11 10 14 14 C 1.53000 * 109.44816 * 181.25443 * 13 12 11 15 15 N 1.46508 * 109.45974 * 301.21790 * 13 12 11 16 16 C 1.36935 * 119.99987 * 300.06851 * 15 13 12 17 17 H 1.08000 * 119.99761 * 0.02562 * 16 15 13 18 18 C 1.38807 * 119.99916 * 180.02562 * 16 15 13 19 19 N 1.31618 * 120.00353 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99973 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47054 * 60.00075 * 20 18 16 22 22 H 1.48505 * 109.47109 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47317 * 300.00279 * 20 18 16 24 24 C 1.53037 * 109.53948 * 61.23683 * 13 12 11 25 25 C 1.46929 * 120.62796 * 179.97438 * 10 8 6 26 26 H 1.08997 * 109.47122 * 300.00432 * 1 2 3 27 27 H 1.09000 * 109.46540 * 60.00014 * 1 2 3 28 28 H 1.08994 * 109.46916 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47637 * 239.99610 * 2 1 3 30 30 H 1.09004 * 109.47028 * 119.99895 * 2 1 3 31 31 H 1.09002 * 117.49833 * 359.97438 * 5 3 2 32 32 H 1.09002 * 117.49953 * 144.99738 * 5 3 2 33 33 H 1.09000 * 109.59034 * 353.42239 * 11 10 8 34 34 H 1.09000 * 109.58582 * 113.84662 * 11 10 8 35 35 H 1.09005 * 109.56221 * 185.55355 * 12 11 10 36 36 H 1.08993 * 109.38091 * 65.51813 * 12 11 10 37 37 H 1.09000 * 109.46527 * 299.93504 * 14 13 12 38 38 H 1.08994 * 109.47229 * 59.93919 * 14 13 12 39 39 H 1.09003 * 109.46820 * 179.97438 * 14 13 12 40 40 H 0.97001 * 119.99632 * 120.07169 * 15 13 12 41 41 H 0.97001 * 120.00490 * 180.02562 * 19 18 16 42 42 H 1.09009 * 109.49930 * 178.67993 * 24 13 12 43 43 H 1.08999 * 109.52479 * 58.60246 * 24 13 12 44 44 H 1.08999 * 109.58832 * 246.15497 * 25 10 8 45 45 H 1.08995 * 109.58598 * 6.43937 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3883 2.1718 0.4812 5 6 2.8443 1.9074 -1.2157 6 6 3.5508 1.6583 0.1184 7 1 4.1815 0.7727 0.1963 8 6 4.0231 2.8629 0.8912 9 8 3.2158 3.6174 1.3910 10 7 5.3426 3.1016 1.0269 11 6 6.3326 2.1934 0.4323 12 6 7.3142 1.7494 1.5155 13 6 7.9179 2.9830 2.1904 14 6 8.9245 2.5404 3.2542 15 7 8.5985 3.8047 1.1864 16 6 9.6361 3.2812 0.4622 17 1 9.9524 2.2624 0.6309 18 6 10.2812 4.0599 -0.4887 19 7 9.8961 5.3016 -0.6939 20 14 11.6971 3.3459 -1.4762 21 1 11.2212 2.1658 -2.2418 22 1 12.2106 4.3724 -2.4185 23 1 12.7847 2.9317 -0.5537 24 6 6.8056 3.8014 2.8501 25 6 5.8183 4.2721 1.7769 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8935 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.0104 1.1855 -2.0153 32 1 2.7214 2.9425 -1.5345 33 1 5.8265 1.3206 0.0197 34 1 6.8753 2.7114 -0.3584 35 1 8.1095 1.1548 1.0658 36 1 6.7870 1.1500 2.2576 37 1 8.4182 1.9295 4.0015 38 1 9.7168 1.9576 2.7846 39 1 9.3551 3.4189 3.7349 40 1 8.3141 4.7196 1.0347 41 1 10.3467 5.8457 -1.3587 42 1 7.2390 4.6674 3.3505 43 1 6.2826 3.1835 3.5799 44 1 6.3182 4.9628 1.0978 45 1 4.9726 4.7718 2.2491 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274375568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:41 Heat of formation + Delta-G solvation = -27.156590 kcal Electronic energy + Delta-G solvation = -23008.086891 eV Core-core repulsion = 19832.386656 eV Total energy + Delta-G solvation = -3175.700235 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.47872 -39.62617 -37.88247 -36.00431 -34.17640 -32.97727 -32.07019 -30.85483 -29.21056 -26.20499 -25.56835 -24.62857 -24.23192 -23.28159 -21.46162 -20.56817 -19.48225 -18.97046 -18.24955 -17.05990 -16.58686 -16.29296 -15.77368 -15.55565 -15.44071 -15.18363 -14.90819 -14.89988 -14.45628 -14.08552 -13.65310 -13.39513 -13.35398 -13.14919 -12.96508 -12.80132 -12.67598 -12.62209 -12.54074 -12.20979 -12.17121 -12.04965 -11.92238 -11.79636 -11.46717 -11.21540 -11.11341 -10.94299 -10.80243 -10.67801 -9.60303 -8.88883 -7.84574 -5.10664 1.48918 1.51002 1.52092 1.57660 2.01556 2.62204 2.86482 3.44795 3.49472 3.76666 3.81677 3.84396 3.97066 3.99587 4.13810 4.19647 4.28849 4.35002 4.43204 4.51418 4.58734 4.67516 4.71107 4.77908 4.79643 4.88509 4.94739 4.99419 5.02566 5.05647 5.10162 5.17881 5.18063 5.24854 5.31807 5.35926 5.37526 5.52442 5.58014 5.66380 5.70355 6.36953 6.49993 7.16712 7.44094 8.20447 8.43868 9.39138 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021200 B = 0.004373 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.425661 B = 6401.870427 C = 6884.638242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 C -0.113 4.113 4 H 0.094 0.906 5 C -0.141 4.141 6 C -0.198 4.198 7 H 0.146 0.854 8 C 0.535 3.465 9 O -0.593 6.593 10 N -0.595 5.595 11 C 0.122 3.878 12 C -0.130 4.130 13 C 0.187 3.813 14 C -0.144 4.144 15 N -0.725 5.725 16 C -0.211 4.211 17 H 0.079 0.921 18 C -0.077 4.077 19 N -0.973 5.973 20 Si 0.959 3.041 21 H -0.277 1.277 22 H -0.305 1.305 23 H -0.283 1.283 24 C -0.118 4.118 25 C 0.118 3.882 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.131 0.869 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.043 0.957 39 H 0.038 0.962 40 H 0.370 0.630 41 H 0.245 0.755 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.050 0.950 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.996 -12.746 2.793 19.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.127 4.127 3 C -0.132 4.132 4 H 0.112 0.888 5 C -0.178 4.178 6 C -0.219 4.219 7 H 0.163 0.837 8 C 0.325 3.675 9 O -0.475 6.475 10 N -0.326 5.326 11 C 0.000 4.000 12 C -0.170 4.170 13 C 0.098 3.902 14 C -0.203 4.203 15 N -0.365 5.365 16 C -0.343 4.343 17 H 0.097 0.903 18 C -0.269 4.269 19 N -0.625 5.625 20 Si 0.790 3.210 21 H -0.203 1.203 22 H -0.232 1.232 23 H -0.210 1.210 24 C -0.157 4.157 25 C -0.005 4.005 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.149 0.851 32 H 0.100 0.900 33 H 0.122 0.878 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.203 0.797 41 H 0.054 0.946 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.068 0.932 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.257 -12.473 2.998 19.179 hybrid contribution 1.276 0.839 -0.687 1.674 sum -12.981 -11.634 2.310 17.584 Atomic orbital electron populations 1.21739 0.94770 1.02326 1.01800 1.21167 0.96560 0.91910 1.03068 1.22497 0.90340 0.99638 1.00720 0.88803 1.23180 1.01002 1.03065 0.90550 1.22382 0.98393 0.98311 1.02777 0.83655 1.20275 0.81459 0.86200 0.79538 1.90611 1.54425 1.50932 1.51578 1.48075 1.05502 1.26303 1.52687 1.21604 0.89369 0.93087 0.95954 1.22170 0.98263 0.98310 0.98250 1.19852 0.90774 0.90792 0.88805 1.22135 0.99364 1.00423 0.98382 1.42692 1.37868 1.13079 1.42890 1.19403 1.06729 0.96586 1.11604 0.90337 1.25366 1.02737 0.96568 1.02190 1.69803 1.45427 1.08850 1.38386 0.85414 0.80227 0.76865 0.78498 1.20330 1.23246 1.20968 1.22004 0.95731 1.00752 0.97201 1.21423 0.97358 0.87672 0.94023 0.93306 0.92520 0.91268 0.90049 0.91092 0.85132 0.89972 0.87843 0.92956 0.91207 0.90619 0.91400 0.93796 0.94233 0.79726 0.94602 0.90871 0.89925 0.93205 0.90280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.87 71.98 0.71 -1.29 16 2 C -0.09 -1.33 6.22 30.59 0.19 -1.14 16 3 C -0.11 -2.37 5.25 -10.77 -0.06 -2.43 16 4 H 0.09 2.41 7.60 -2.38 -0.02 2.39 16 5 C -0.14 -2.90 9.88 30.60 0.30 -2.60 16 6 C -0.20 -4.70 4.86 -11.51 -0.06 -4.75 16 7 H 0.15 2.77 6.55 -2.39 -0.02 2.76 16 8 C 0.53 17.46 7.48 87.66 0.66 18.12 16 9 O -0.59 -23.32 15.67 -3.02 -0.05 -23.37 16 10 N -0.60 -19.61 2.98 -819.65 -2.44 -22.05 16 11 C 0.12 3.80 6.06 86.22 0.52 4.33 16 12 C -0.13 -4.00 4.69 30.53 0.14 -3.86 16 13 C 0.19 6.61 0.74 3.63 0.00 6.61 16 14 C -0.14 -4.73 8.44 71.98 0.61 -4.13 16 15 N -0.72 -33.15 4.14 -303.23 -1.25 -34.41 16 16 C -0.21 -10.68 8.68 84.03 0.73 -9.95 16 17 H 0.08 3.78 6.70 -2.91 -0.02 3.76 16 18 C -0.08 -4.21 5.50 84.86 0.47 -3.75 16 19 N -0.97 -58.02 13.06 21.65 0.28 -57.74 16 20 Si 0.96 44.69 29.55 68.60 2.03 46.72 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.31 -14.78 7.11 99.48 0.71 -14.08 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 24 C -0.12 -3.79 4.96 30.68 0.15 -3.63 16 25 C 0.12 4.15 6.16 86.38 0.53 4.68 16 26 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.08 0.97 7.87 -2.39 -0.02 0.95 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.13 1.97 8.03 -2.39 -0.02 1.95 16 32 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.10 2.51 5.51 -2.39 -0.01 2.50 16 34 H 0.05 2.05 7.74 -2.39 -0.02 2.03 16 35 H 0.07 2.25 7.31 -2.38 -0.02 2.24 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.04 1.54 7.27 -2.39 -0.02 1.52 16 39 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.37 18.93 6.46 -92.71 -0.60 18.33 16 41 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 42 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 43 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.05 2.01 6.94 -2.39 -0.02 1.99 16 45 H 0.08 2.81 7.00 -2.39 -0.02 2.79 16 Total: -1.00 -64.56 350.23 3.84 -60.72 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: 0.37 Total: 33.92 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: 4.90 Total: -3.79 kcal Atomic # 7 Polarization: -110.79 SS G_CDS: -3.41 Total: -114.20 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.05 Total: -23.37 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -64.56 3.84 -60.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274375568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.568 kcal (2) G-P(sol) polarization free energy of solvation -64.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds