Wall clock time and date at job start Tue Mar 31 2020 01:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46820 * 2 1 4 4 C 1.53005 * 109.47035 * 180.02562 * 3 2 1 5 5 H 1.09002 * 115.55067 * 29.41783 * 4 3 2 6 6 C 1.52999 * 117.51737 * 243.71817 * 4 3 2 7 7 C 1.53005 * 117.49765 * 175.08796 * 4 3 2 8 8 H 1.08992 * 117.49816 * 0.02562 * 7 4 3 9 9 C 1.50697 * 117.49374 * 214.99903 * 7 4 3 10 10 O 1.21281 * 120.00635 * 0.02562 * 9 7 4 11 11 N 1.34783 * 119.99792 * 180.02562 * 9 7 4 12 12 C 1.46495 * 120.00094 * 180.02562 * 11 9 7 13 13 C 1.53781 * 113.61493 * 252.49541 * 12 11 9 14 14 C 1.53789 * 87.07923 * 270.88535 * 13 12 11 15 15 C 1.52998 * 113.61057 * 220.01936 * 14 13 12 16 16 N 1.46500 * 109.47128 * 272.49335 * 15 14 13 17 17 C 1.36940 * 120.00272 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99883 * 0.02562 * 17 16 15 19 19 C 1.38806 * 119.99946 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99843 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00295 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47137 * 89.99708 * 21 19 17 23 23 H 1.48500 * 109.46886 * 209.99941 * 21 19 17 24 24 H 1.48500 * 109.46833 * 329.99420 * 21 19 17 25 25 C 1.53780 * 87.08196 * 334.56553 * 14 13 12 26 26 H 1.08998 * 109.47242 * 60.00024 * 1 2 3 27 27 H 1.08998 * 109.47109 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47298 * 299.99741 * 1 2 3 29 29 H 1.09000 * 109.47298 * 240.00259 * 2 1 3 30 30 H 1.08998 * 109.47242 * 119.99976 * 2 1 3 31 31 H 1.08998 * 109.47460 * 60.00224 * 3 2 1 32 32 H 1.09001 * 109.47585 * 299.99666 * 3 2 1 33 33 H 1.09003 * 117.50034 * 0.02562 * 6 4 3 34 34 H 1.08995 * 117.49797 * 145.02727 * 6 4 3 35 35 H 0.97004 * 119.99427 * 359.97438 * 11 9 7 36 36 H 1.08997 * 112.84928 * 23.80517 * 12 11 9 37 37 H 1.09000 * 113.61086 * 25.42873 * 13 12 11 38 38 H 1.08999 * 113.61439 * 156.33610 * 13 12 11 39 39 H 1.08991 * 113.61582 * 89.11615 * 14 13 12 40 40 H 1.08999 * 109.47585 * 32.49866 * 15 14 13 41 41 H 1.09001 * 109.47058 * 152.49934 * 15 14 13 42 42 H 0.97005 * 119.99739 * 0.02562 * 16 15 14 43 43 H 0.97006 * 120.00091 * 179.97438 * 20 19 17 44 44 H 1.08997 * 113.61499 * 270.88840 * 25 14 13 45 45 H 1.08998 * 113.69139 * 139.99193 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 4.0399 0.5860 -0.4840 6 6 4.2773 2.0432 1.2158 7 6 4.2763 2.7948 -0.1170 8 1 3.6510 3.6843 -0.1926 9 6 5.5685 2.8404 -0.8909 10 8 6.0105 1.8290 -1.3936 11 7 6.2332 4.0053 -1.0246 12 6 7.4891 4.0499 -1.7775 13 6 8.7333 4.2228 -0.8904 14 6 8.5298 5.7401 -1.0367 15 6 9.8346 6.5191 -1.2141 16 7 10.3815 6.8617 0.1011 17 6 11.5537 7.5637 0.1936 18 1 12.0747 7.8652 -0.7030 19 6 12.0720 7.8878 1.4398 20 7 13.1984 8.5630 1.5287 21 14 11.1712 7.3657 2.9908 22 1 11.6515 6.0261 3.4150 23 1 11.4335 8.3505 4.0708 24 1 9.7124 7.3055 2.7193 25 6 7.8089 5.4365 -2.3607 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.6527 2.4382 2.0171 34 1 5.2126 1.5819 1.5327 35 1 5.8795 4.8144 -0.6229 36 1 7.5770 3.2406 -2.5023 37 1 8.5969 3.8603 0.1284 38 1 9.6518 3.8590 -1.3509 39 1 7.8800 6.1691 -0.2741 40 1 10.5531 5.9056 -1.7578 41 1 9.6389 7.4328 -1.7753 42 1 9.9137 6.5905 0.9065 43 1 13.5605 8.7898 2.3996 44 1 8.4747 5.4044 -3.2230 45 1 6.9261 6.0531 -2.5301 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275284645.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:26 Heat of formation + Delta-G solvation = -0.152610 kcal Electronic energy + Delta-G solvation = -21241.677736 eV Core-core repulsion = 18067.148482 eV Total energy + Delta-G solvation = -3174.529254 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.48257 -38.96976 -37.21096 -34.70145 -34.20874 -33.12946 -31.14927 -28.04906 -27.24049 -25.60402 -24.66973 -22.89611 -22.30425 -21.35545 -20.99042 -20.24523 -19.21469 -17.68272 -17.37789 -16.09428 -15.60836 -15.27902 -15.04843 -14.76595 -14.53357 -14.18583 -14.04780 -13.66322 -13.39001 -13.13464 -12.70685 -12.56458 -12.48539 -12.40301 -12.31186 -11.80403 -11.67906 -11.41994 -11.41620 -11.20227 -10.89727 -10.65641 -10.55480 -10.35646 -10.26743 -10.18250 -9.95477 -9.84744 -9.57320 -9.07950 -8.86739 -7.20699 -5.75885 -3.10797 2.32961 2.92814 3.36947 3.40108 3.45004 3.53138 4.22243 4.41960 4.46543 4.59417 4.60032 4.67595 4.70857 4.76768 4.84485 4.90033 5.01138 5.02070 5.15257 5.33462 5.38339 5.42876 5.47636 5.53968 5.62909 5.64945 5.67715 5.70551 5.83607 5.84328 5.85306 5.88297 5.95905 6.03686 6.10919 6.14298 6.26415 6.55959 6.69306 6.82933 7.39216 8.01026 8.10836 8.43504 9.23013 9.95568 10.15861 11.42667 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026797 B = 0.002756 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.653694 B =10158.107574 C =10894.833642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.090 4.090 4 C -0.117 4.117 5 H 0.118 0.882 6 C -0.148 4.148 7 C -0.192 4.192 8 H 0.123 0.877 9 C 0.545 3.455 10 O -0.542 6.542 11 N -0.706 5.706 12 C 0.115 3.885 13 C -0.141 4.141 14 C -0.118 4.118 15 C 0.166 3.834 16 N -0.756 5.756 17 C -0.243 4.243 18 H 0.090 0.910 19 C 0.002 3.998 20 N -0.935 5.935 21 Si 0.886 3.114 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.278 1.278 25 C -0.136 4.136 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.402 0.598 36 H 0.100 0.900 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.029 0.971 41 H 0.027 0.973 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.097 0.903 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.444 -14.125 -4.094 29.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.128 4.128 4 C -0.136 4.136 5 H 0.136 0.864 6 C -0.185 4.185 7 C -0.213 4.213 8 H 0.141 0.859 9 C 0.331 3.669 10 O -0.419 6.419 11 N -0.356 5.356 12 C 0.010 3.990 13 C -0.180 4.180 14 C -0.137 4.137 15 C 0.039 3.961 16 N -0.401 5.401 17 C -0.373 4.373 18 H 0.107 0.893 19 C -0.194 4.194 20 N -0.583 5.583 21 Si 0.717 3.283 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.205 1.205 25 C -0.175 4.175 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.236 0.764 36 H 0.118 0.882 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.047 0.953 41 H 0.044 0.956 42 H 0.193 0.807 43 H 0.069 0.931 44 H 0.115 0.885 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -24.906 -14.722 -4.541 29.286 hybrid contribution -0.570 0.336 1.452 1.595 sum -25.476 -14.386 -3.089 29.420 Atomic orbital electron populations 1.21781 0.95848 1.01676 1.01777 1.21502 0.95668 0.96456 1.02399 1.21251 0.91871 0.97436 1.02213 1.22457 0.94668 0.95335 1.01125 0.86416 1.23117 1.03205 1.01933 0.90285 1.22302 0.97754 0.98938 1.02322 0.85939 1.19660 0.84460 0.83154 0.79605 1.90689 1.68794 1.33983 1.48460 1.45629 1.23924 1.10916 1.55138 1.21947 0.83453 0.99003 0.94619 1.23454 0.97697 0.96427 1.00409 1.22811 0.98284 0.95619 0.96999 1.20621 0.91001 0.95853 0.88589 1.42702 1.27165 1.68161 1.02058 1.19083 0.97244 1.26568 0.94401 0.89261 1.24685 0.97156 1.00389 0.97125 1.69708 1.20740 1.44320 1.23555 0.86518 0.79363 0.78111 0.84343 1.21115 1.21767 1.20452 1.23295 1.00583 0.95233 0.98347 0.92747 0.92721 0.92771 0.91773 0.91771 0.91595 0.91398 0.87749 0.88205 0.76378 0.88218 0.91529 0.88846 0.89587 0.95320 0.95562 0.80747 0.93102 0.88504 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 37.16 0.37 -0.44 16 2 C -0.12 -0.75 5.89 -26.73 -0.16 -0.91 16 3 C -0.09 -0.58 5.50 -26.73 -0.15 -0.73 16 4 C -0.12 -0.98 5.25 -90.61 -0.48 -1.46 16 5 H 0.12 1.20 7.60 -51.93 -0.39 0.81 16 6 C -0.15 -1.20 9.88 -26.73 -0.26 -1.46 16 7 C -0.19 -1.70 5.91 -91.77 -0.54 -2.24 16 8 H 0.12 0.83 8.14 -51.93 -0.42 0.40 16 9 C 0.54 6.60 7.61 -10.98 -0.08 6.52 16 10 O -0.54 -8.62 15.86 5.56 0.09 -8.53 16 11 N -0.71 -7.69 5.26 -53.02 -0.28 -7.97 16 12 C 0.11 1.40 4.32 -67.12 -0.29 1.11 16 13 C -0.14 -1.98 7.43 -25.91 -0.19 -2.18 16 14 C -0.12 -1.71 3.63 -89.80 -0.33 -2.04 16 15 C 0.17 3.16 6.10 -4.04 -0.02 3.14 16 16 N -0.76 -18.08 5.41 -59.91 -0.32 -18.41 16 17 C -0.24 -6.98 10.47 -15.06 -0.16 -7.14 16 18 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 19 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 20 N -0.94 -29.69 13.97 55.49 0.78 -28.91 16 21 Si 0.89 22.35 27.74 -169.99 -4.71 17.63 16 22 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 24 H -0.28 -6.56 6.52 56.52 0.37 -6.20 16 25 C -0.14 -1.55 7.39 -25.92 -0.19 -1.74 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.37 7.88 -51.93 -0.41 -0.03 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.10 0.66 8.03 -51.93 -0.42 0.24 16 34 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.40 3.51 8.70 -40.82 -0.36 3.16 16 36 H 0.10 1.31 7.46 -51.93 -0.39 0.92 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.09 1.34 7.90 -51.93 -0.41 0.93 16 39 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.03 0.56 7.84 -51.93 -0.41 0.15 16 41 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.36 8.42 5.53 -40.82 -0.23 8.19 16 43 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 44 H 0.10 1.05 8.10 -51.93 -0.42 0.63 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 366.88 15.07 5.53 5.53 Total: -1.00 -33.67 366.88 -9.60 -43.26 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -8.09 Total: 7.00 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -2.58 Total: -9.60 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: 0.17 Total: -55.29 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.09 Total: -8.53 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.71 Total: 17.63 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.67 -9.60 -43.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275284645.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.111 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds