Wall clock time and date at job start Tue Mar 31 2020 01:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46820 * 2 1 4 4 C 1.53005 * 109.47035 * 180.02562 * 3 2 1 5 5 H 1.09002 * 115.55067 * 29.41783 * 4 3 2 6 6 C 1.52999 * 117.51737 * 243.71817 * 4 3 2 7 7 C 1.53005 * 117.49765 * 175.08796 * 4 3 2 8 8 H 1.08992 * 117.49816 * 0.02562 * 7 4 3 9 9 C 1.50697 * 117.49374 * 214.99903 * 7 4 3 10 10 O 1.21281 * 120.00635 * 0.02562 * 9 7 4 11 11 N 1.34783 * 119.99792 * 180.02562 * 9 7 4 12 12 C 1.46495 * 120.00094 * 180.02562 * 11 9 7 13 13 C 1.53781 * 113.61493 * 252.49541 * 12 11 9 14 14 C 1.53789 * 87.07923 * 270.88535 * 13 12 11 15 15 C 1.52998 * 113.61057 * 220.01936 * 14 13 12 16 16 N 1.46500 * 109.47128 * 272.49335 * 15 14 13 17 17 C 1.36940 * 120.00272 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99883 * 0.02562 * 17 16 15 19 19 C 1.38806 * 119.99946 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99843 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00295 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47137 * 89.99708 * 21 19 17 23 23 H 1.48500 * 109.46886 * 209.99941 * 21 19 17 24 24 H 1.48500 * 109.46833 * 329.99420 * 21 19 17 25 25 C 1.53780 * 87.08196 * 334.56553 * 14 13 12 26 26 H 1.08998 * 109.47242 * 60.00024 * 1 2 3 27 27 H 1.08998 * 109.47109 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47298 * 299.99741 * 1 2 3 29 29 H 1.09000 * 109.47298 * 240.00259 * 2 1 3 30 30 H 1.08998 * 109.47242 * 119.99976 * 2 1 3 31 31 H 1.08998 * 109.47460 * 60.00224 * 3 2 1 32 32 H 1.09001 * 109.47585 * 299.99666 * 3 2 1 33 33 H 1.09003 * 117.50034 * 0.02562 * 6 4 3 34 34 H 1.08995 * 117.49797 * 145.02727 * 6 4 3 35 35 H 0.97004 * 119.99427 * 359.97438 * 11 9 7 36 36 H 1.08997 * 112.84928 * 23.80517 * 12 11 9 37 37 H 1.09000 * 113.61086 * 25.42873 * 13 12 11 38 38 H 1.08999 * 113.61439 * 156.33610 * 13 12 11 39 39 H 1.08991 * 113.61582 * 89.11615 * 14 13 12 40 40 H 1.08999 * 109.47585 * 32.49866 * 15 14 13 41 41 H 1.09001 * 109.47058 * 152.49934 * 15 14 13 42 42 H 0.97005 * 119.99739 * 0.02562 * 16 15 14 43 43 H 0.97006 * 120.00091 * 179.97438 * 20 19 17 44 44 H 1.08997 * 113.61499 * 270.88840 * 25 14 13 45 45 H 1.08998 * 113.69139 * 139.99193 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 4.0399 0.5860 -0.4840 6 6 4.2773 2.0432 1.2158 7 6 4.2763 2.7948 -0.1170 8 1 3.6510 3.6843 -0.1926 9 6 5.5685 2.8404 -0.8909 10 8 6.0105 1.8290 -1.3936 11 7 6.2332 4.0053 -1.0246 12 6 7.4891 4.0499 -1.7775 13 6 8.7333 4.2228 -0.8904 14 6 8.5298 5.7401 -1.0367 15 6 9.8346 6.5191 -1.2141 16 7 10.3815 6.8617 0.1011 17 6 11.5537 7.5637 0.1936 18 1 12.0747 7.8652 -0.7030 19 6 12.0720 7.8878 1.4398 20 7 13.1984 8.5630 1.5287 21 14 11.1712 7.3657 2.9908 22 1 11.6515 6.0261 3.4150 23 1 11.4335 8.3505 4.0708 24 1 9.7124 7.3055 2.7193 25 6 7.8089 5.4365 -2.3607 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.6527 2.4382 2.0171 34 1 5.2126 1.5819 1.5327 35 1 5.8795 4.8144 -0.6229 36 1 7.5770 3.2406 -2.5023 37 1 8.5969 3.8603 0.1284 38 1 9.6518 3.8590 -1.3509 39 1 7.8800 6.1691 -0.2741 40 1 10.5531 5.9056 -1.7578 41 1 9.6389 7.4328 -1.7753 42 1 9.9137 6.5905 0.9065 43 1 13.5605 8.7898 2.3996 44 1 8.4747 5.4044 -3.2230 45 1 6.9261 6.0531 -2.5301 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275284645.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:26 Heat of formation + Delta-G solvation = -21.563279 kcal Electronic energy + Delta-G solvation = -21242.606173 eV Core-core repulsion = 18067.148482 eV Total energy + Delta-G solvation = -3175.457691 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.43749 -39.94835 -38.01811 -36.48055 -34.75694 -34.37832 -33.15016 -29.10431 -28.28729 -26.65339 -25.73932 -24.42758 -22.96113 -22.78324 -21.62283 -21.04780 -20.46088 -19.48376 -18.36383 -17.08159 -16.67353 -16.21870 -16.08865 -16.04809 -15.83529 -15.36124 -15.15587 -14.90953 -14.47309 -14.18290 -13.97775 -13.70532 -13.52229 -13.40205 -13.14840 -13.00613 -12.93150 -12.74267 -12.20969 -12.18012 -11.94768 -11.88572 -11.73398 -11.67780 -11.42279 -11.20453 -11.19259 -11.02776 -10.92288 -10.76378 -10.05721 -9.28512 -8.03679 -5.36779 1.35831 1.40537 1.44117 1.47732 2.07692 2.47553 2.84949 3.27287 3.45325 3.56089 3.59912 3.75130 3.82517 3.86790 3.94089 4.10083 4.15478 4.21014 4.29700 4.38524 4.52243 4.64688 4.70306 4.82256 4.83519 4.87670 4.88855 4.90263 4.94920 4.97267 4.99669 5.06668 5.11028 5.21355 5.24652 5.33700 5.36805 5.41158 5.52033 5.65428 5.75557 6.20663 6.53947 7.07655 7.22486 7.84813 8.03888 9.17939 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026797 B = 0.002756 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.653694 B =10158.107574 C =10894.833642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.083 4.083 4 C -0.120 4.120 5 H 0.092 0.908 6 C -0.141 4.141 7 C -0.192 4.192 8 H 0.152 0.848 9 C 0.539 3.461 10 O -0.588 6.588 11 N -0.696 5.696 12 C 0.123 3.877 13 C -0.146 4.146 14 C -0.113 4.113 15 C 0.161 3.839 16 N -0.757 5.757 17 C -0.236 4.236 18 H 0.055 0.945 19 C -0.068 4.068 20 N -0.985 5.985 21 Si 0.959 3.041 22 H -0.281 1.281 23 H -0.295 1.295 24 H -0.248 1.248 25 C -0.117 4.117 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.130 0.870 34 H 0.083 0.917 35 H 0.416 0.584 36 H 0.090 0.910 37 H 0.057 0.943 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.023 0.977 41 H 0.026 0.974 42 H 0.366 0.634 43 H 0.258 0.742 44 H 0.103 0.897 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.681 -14.242 -3.279 32.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.121 4.121 4 C -0.139 4.139 5 H 0.110 0.890 6 C -0.179 4.179 7 C -0.213 4.213 8 H 0.170 0.830 9 C 0.327 3.673 10 O -0.468 6.468 11 N -0.347 5.347 12 C 0.017 3.983 13 C -0.184 4.184 14 C -0.131 4.131 15 C 0.036 3.964 16 N -0.403 5.403 17 C -0.367 4.367 18 H 0.073 0.927 19 C -0.259 4.259 20 N -0.635 5.635 21 Si 0.786 3.214 22 H -0.207 1.207 23 H -0.221 1.221 24 H -0.173 1.173 25 C -0.155 4.155 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.148 0.852 34 H 0.102 0.898 35 H 0.253 0.747 36 H 0.108 0.892 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.114 0.886 40 H 0.041 0.959 41 H 0.044 0.956 42 H 0.199 0.801 43 H 0.067 0.933 44 H 0.121 0.879 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -28.196 -14.834 -3.751 32.080 hybrid contribution 0.518 0.352 1.084 1.252 sum -27.678 -14.482 -2.667 31.352 Atomic orbital electron populations 1.21768 0.95013 1.01965 1.02167 1.21505 0.96371 0.96398 1.01896 1.21228 0.90158 0.97618 1.03054 1.22436 0.95874 0.94345 1.01228 0.88962 1.23187 1.02818 1.01283 0.90567 1.22371 0.96416 1.00242 1.02235 0.83037 1.20274 0.85286 0.82610 0.79115 1.90672 1.70144 1.35562 1.50427 1.45567 1.23190 1.11320 1.54597 1.21765 0.83278 0.99237 0.94045 1.23467 0.98504 0.96199 1.00273 1.22741 0.96259 0.94761 0.99359 1.20821 0.93020 0.96305 0.86294 1.42720 1.25836 1.67533 1.04223 1.19075 0.98409 1.25996 0.93254 0.92742 1.25571 0.98288 1.01081 1.00996 1.69898 1.22925 1.46379 1.24336 0.85349 0.79589 0.77325 0.79153 1.20749 1.22123 1.17272 1.23216 1.01015 0.94480 0.96829 0.92573 0.92559 0.92124 0.92742 0.91932 0.90078 0.91090 0.85198 0.89829 0.74741 0.89238 0.92418 0.89657 0.88633 0.95888 0.95580 0.80137 0.93348 0.87854 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 71.98 0.71 -0.62 16 2 C -0.12 -1.36 5.89 30.59 0.18 -1.18 16 3 C -0.08 -0.89 5.50 30.60 0.17 -0.72 16 4 C -0.12 -1.85 5.25 -10.79 -0.06 -1.90 16 5 H 0.09 1.92 7.60 -2.39 -0.02 1.90 16 6 C -0.14 -1.97 9.88 30.60 0.30 -1.67 16 7 C -0.19 -2.93 5.91 -11.54 -0.07 -3.00 16 8 H 0.15 1.43 8.14 -2.39 -0.02 1.41 16 9 C 0.54 12.28 7.61 87.66 0.67 12.95 16 10 O -0.59 -18.67 15.86 -3.03 -0.05 -18.72 16 11 N -0.70 -13.48 5.26 -440.03 -2.32 -15.80 16 12 C 0.12 2.75 4.32 45.52 0.20 2.95 16 13 C -0.15 -3.89 7.43 31.12 0.23 -3.66 16 14 C -0.11 -2.98 3.63 -10.27 -0.04 -3.02 16 15 C 0.16 5.95 6.10 86.38 0.53 6.48 16 16 N -0.76 -35.45 5.41 -343.46 -1.86 -37.31 16 17 C -0.24 -13.71 10.47 84.03 0.88 -12.83 16 18 H 0.05 3.47 8.06 -2.91 -0.02 3.44 16 19 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 20 N -0.98 -63.90 13.97 21.65 0.30 -63.60 16 21 Si 0.96 45.73 27.74 68.60 1.90 47.64 16 22 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 23 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 24 H -0.25 -10.50 6.52 99.48 0.65 -9.85 16 25 C -0.12 -2.33 7.39 31.12 0.23 -2.10 16 26 H 0.06 0.47 8.14 -2.39 -0.02 0.46 16 27 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.08 0.64 7.88 -2.39 -0.02 0.62 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.13 1.16 8.03 -2.39 -0.02 1.14 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.42 5.78 8.70 -92.71 -0.81 4.97 16 36 H 0.09 2.27 7.46 -2.39 -0.02 2.25 16 37 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.08 2.41 7.90 -2.39 -0.02 2.39 16 39 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.02 0.88 7.84 -2.39 -0.02 0.86 16 41 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.37 16.22 5.53 -92.70 -0.51 15.71 16 43 H 0.26 15.89 8.31 -92.70 -0.77 15.12 16 44 H 0.10 1.98 8.10 -2.39 -0.02 1.96 16 45 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -74.44 366.88 1.97 -72.47 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: -0.42 Total: 27.25 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: 4.40 Total: -11.93 kcal Atomic # 7 Polarization: -112.83 SS G_CDS: -3.87 Total: -116.70 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.05 Total: -18.72 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.90 Total: 47.64 kcal Total: -74.44 1.97 -72.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275284645.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.908 kcal (2) G-P(sol) polarization free energy of solvation -74.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds