Wall clock time and date at job start Tue Mar 31 2020 01:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47163 * 2 1 4 4 C 1.52999 * 109.47163 * 180.02562 * 3 2 1 5 5 H 1.08994 * 115.56270 * 29.30829 * 4 3 2 6 6 C 1.53005 * 117.49816 * 243.61986 * 4 3 2 7 7 C 1.52996 * 59.99912 * 252.51255 * 6 4 3 8 8 H 1.08999 * 117.50090 * 107.51574 * 7 6 4 9 9 C 1.50706 * 117.49617 * 252.50921 * 7 6 4 10 10 O 1.21280 * 119.99651 * 68.61177 * 9 7 6 11 11 N 1.34775 * 120.00164 * 248.60884 * 9 7 6 12 12 C 1.47422 * 125.64686 * 4.97954 * 11 9 7 13 13 C 1.54912 * 104.83029 * 204.08857 * 12 11 9 14 14 C 1.55155 * 101.58295 * 322.99226 * 13 12 11 15 15 C 1.47022 * 125.64927 * 184.93571 * 11 9 7 16 16 H 1.09008 * 109.88025 * 59.40588 * 15 11 9 17 17 C 1.53002 * 109.88169 * 298.39836 * 15 11 9 18 18 N 1.46497 * 109.46824 * 175.25287 * 17 15 11 19 19 C 1.36941 * 119.99907 * 174.93422 * 18 17 15 20 20 H 1.08002 * 120.00012 * 359.97438 * 19 18 17 21 21 C 1.38814 * 120.00204 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99623 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00191 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47328 * 59.99999 * 23 21 19 25 25 H 1.48499 * 109.47321 * 180.02562 * 23 21 19 26 26 H 1.48508 * 109.46853 * 299.99963 * 23 21 19 27 27 H 1.09001 * 109.47260 * 60.00004 * 1 2 3 28 28 H 1.08995 * 109.47485 * 180.02562 * 1 2 3 29 29 H 1.09012 * 109.47398 * 300.00312 * 1 2 3 30 30 H 1.08996 * 109.47111 * 239.99860 * 2 1 3 31 31 H 1.09001 * 109.46737 * 120.00048 * 2 1 3 32 32 H 1.09004 * 109.47229 * 60.00235 * 3 2 1 33 33 H 1.09001 * 109.47029 * 300.00137 * 3 2 1 34 34 H 1.08999 * 117.49618 * 145.02101 * 6 4 3 35 35 H 1.08999 * 117.51648 * 359.97438 * 6 4 3 36 36 H 1.08998 * 110.36933 * 322.93313 * 12 11 9 37 37 H 1.09000 * 110.36502 * 85.14280 * 12 11 9 38 38 H 1.09000 * 110.99984 * 81.06690 * 13 12 11 39 39 H 1.09001 * 111.00418 * 204.87448 * 13 12 11 40 40 H 1.08992 * 110.72150 * 277.13970 * 14 13 12 41 41 H 1.09005 * 110.71661 * 153.86164 * 14 13 12 42 42 H 1.09001 * 109.47082 * 55.25335 * 17 15 11 43 43 H 1.08995 * 109.46840 * 295.24816 * 17 15 11 44 44 H 0.97004 * 120.00526 * 354.92882 * 18 17 15 45 45 H 0.96998 * 119.99252 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 4.0401 0.5852 -0.4823 6 6 4.2770 2.0453 1.2150 7 6 4.2763 2.7945 -0.1190 8 1 3.6514 3.6842 -0.1963 9 6 5.5689 2.8389 -0.8926 10 8 6.0113 1.8264 -1.3928 11 7 6.2332 4.0037 -1.0288 12 6 5.8672 5.2811 -0.3904 13 6 6.4940 6.3707 -1.2958 14 6 7.8293 5.6993 -1.7123 15 6 7.4433 4.2105 -1.8377 16 1 7.2390 3.9646 -2.8799 17 6 8.5790 3.3321 -1.3091 18 7 9.7442 3.4593 -2.1879 19 6 10.9216 2.8431 -1.8573 20 1 10.9913 2.2637 -0.9485 21 6 12.0256 2.9631 -2.6903 22 7 11.9407 3.6697 -3.7976 23 14 13.6314 2.1220 -2.2397 24 1 13.4125 0.6564 -2.1432 25 1 14.6479 2.4034 -3.2850 26 1 14.1106 2.6381 -0.9322 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 5.2122 1.5845 1.5330 35 1 3.6523 2.4424 2.0152 36 1 4.7833 5.3922 -0.3579 37 1 6.2837 5.3356 0.6154 38 1 5.8662 6.5645 -2.1655 39 1 6.6752 7.2878 -0.7352 40 1 8.5873 5.8375 -0.9413 41 1 8.1753 6.0900 -2.6693 42 1 8.2532 2.2921 -1.2857 43 1 8.8468 3.6517 -0.3021 44 1 9.6817 3.9799 -3.0040 45 1 12.7123 3.7538 -4.3793 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277932509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:26 Heat of formation + Delta-G solvation = -14.624502 kcal Electronic energy + Delta-G solvation = -22052.538139 eV Core-core repulsion = 18877.381337 eV Total energy + Delta-G solvation = -3175.156803 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.21641 -38.24048 -36.62829 -34.46306 -34.01985 -31.59302 -31.23448 -28.76335 -27.69164 -25.17045 -24.47031 -22.56678 -22.13779 -21.87672 -20.84940 -20.16397 -18.65249 -17.37556 -16.76092 -16.29386 -15.48560 -15.12582 -14.79481 -14.41671 -14.20823 -13.68285 -13.61683 -13.37845 -13.23905 -12.97508 -12.76799 -12.65167 -12.34257 -12.31059 -11.97434 -11.53314 -11.41680 -11.24091 -11.15778 -11.01797 -10.87754 -10.78564 -10.52005 -10.41565 -10.33407 -10.11119 -10.03316 -9.71338 -9.48165 -8.77212 -8.37578 -6.83475 -5.69654 -2.97440 2.66245 3.06218 3.49309 3.53018 3.54854 3.75932 4.31907 4.57353 4.61785 4.67097 4.68953 4.79788 4.88779 4.92588 4.98281 5.08183 5.15272 5.29891 5.44274 5.47639 5.49802 5.54574 5.57149 5.62421 5.62961 5.65045 5.80008 5.84164 5.84602 5.96969 5.99617 6.02775 6.10767 6.14317 6.22076 6.25005 6.46759 6.62091 6.87623 7.09570 7.74691 7.78084 8.41355 8.50050 9.60206 10.17535 10.53290 11.53512 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020965 B = 0.003456 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.265041 B = 8099.754861 C = 9022.536111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.089 4.089 4 C -0.120 4.120 5 H 0.118 0.882 6 C -0.149 4.149 7 C -0.184 4.184 8 H 0.120 0.880 9 C 0.553 3.447 10 O -0.529 6.529 11 N -0.609 5.609 12 C 0.103 3.897 13 C -0.136 4.136 14 C -0.120 4.120 15 C 0.130 3.870 16 H 0.074 0.926 17 C 0.146 3.854 18 N -0.728 5.728 19 C -0.233 4.233 20 H 0.068 0.932 21 C -0.016 4.016 22 N -0.936 5.936 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.287 1.287 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.034 0.966 43 H 0.019 0.981 44 H 0.383 0.617 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.780 2.801 9.720 24.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.126 4.126 4 C -0.138 4.138 5 H 0.136 0.864 6 C -0.186 4.186 7 C -0.205 4.205 8 H 0.137 0.863 9 C 0.341 3.659 10 O -0.405 6.405 11 N -0.344 5.344 12 C -0.020 4.020 13 C -0.174 4.174 14 C -0.158 4.158 15 C 0.027 3.973 16 H 0.092 0.908 17 C 0.018 3.982 18 N -0.373 5.373 19 C -0.365 4.365 20 H 0.086 0.914 21 C -0.211 4.211 22 N -0.585 5.585 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.052 0.948 43 H 0.037 0.963 44 H 0.216 0.784 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -22.456 2.081 9.536 24.485 hybrid contribution 0.979 -0.095 -0.067 0.986 sum -21.477 1.986 9.468 23.556 Atomic orbital electron populations 1.21781 0.95955 1.01600 1.01680 1.21507 0.95536 0.96553 1.02475 1.21230 0.92006 0.97331 1.02025 1.22461 0.94507 0.95694 1.01158 0.86359 1.23090 1.03139 1.02171 0.90238 1.22271 0.97694 0.98468 1.02093 0.86256 1.19271 0.84288 0.81989 0.80363 1.90743 1.68188 1.32892 1.48655 1.48443 1.27940 1.09008 1.48985 1.22292 0.99685 0.83277 0.96793 1.22810 0.97462 0.97507 0.99583 1.22655 0.96600 0.93024 1.03482 1.21826 0.84571 0.95836 0.95036 0.90756 1.20976 0.86519 0.97248 0.93498 1.42202 1.07541 1.62065 1.25505 1.19173 0.88342 1.24143 1.04797 0.91367 1.24718 0.98194 1.00995 0.97205 1.69653 1.30191 1.44982 1.13658 0.86248 0.83471 0.79250 0.77128 1.21292 1.21698 1.21342 0.92772 0.92772 0.92863 0.91696 0.91781 0.91744 0.91485 0.88213 0.88001 0.91019 0.91374 0.90869 0.90031 0.89918 0.89818 0.94779 0.96304 0.78374 0.93548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.12 -0.96 5.89 -26.73 -0.16 -1.11 16 3 C -0.09 -0.72 5.50 -26.73 -0.15 -0.87 16 4 C -0.12 -1.28 5.25 -90.62 -0.48 -1.76 16 5 H 0.12 1.54 7.60 -51.93 -0.39 1.15 16 6 C -0.15 -1.50 9.88 -26.73 -0.26 -1.76 16 7 C -0.18 -2.13 5.22 -91.77 -0.48 -2.60 16 8 H 0.12 1.10 7.10 -51.93 -0.37 0.73 16 9 C 0.55 9.02 7.45 -10.98 -0.08 8.94 16 10 O -0.53 -11.05 15.05 5.56 0.08 -10.97 16 11 N -0.61 -9.36 3.06 -163.02 -0.50 -9.86 16 12 C 0.10 1.13 6.74 -2.53 -0.02 1.11 16 13 C -0.14 -1.46 7.08 -24.58 -0.17 -1.63 16 14 C -0.12 -1.80 6.21 -24.90 -0.15 -1.96 16 15 C 0.13 2.36 2.95 -66.95 -0.20 2.17 16 16 H 0.07 1.47 8.14 -51.92 -0.42 1.05 16 17 C 0.15 3.32 5.65 -4.04 -0.02 3.29 16 18 N -0.73 -19.60 5.41 -59.91 -0.32 -19.92 16 19 C -0.23 -6.89 9.99 -15.06 -0.15 -7.04 16 20 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 21 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 22 N -0.94 -29.06 13.06 55.49 0.72 -28.34 16 23 Si 0.91 23.25 29.55 -169.99 -5.02 18.23 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.32 8.14 -51.92 -0.42 -0.11 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.45 7.88 -51.93 -0.41 0.04 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.10 0.77 8.03 -51.93 -0.42 0.35 16 36 H 0.07 0.61 6.96 -51.93 -0.36 0.25 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 1.34 7.77 -51.93 -0.40 0.94 16 41 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.03 0.87 6.56 -51.93 -0.34 0.53 16 43 H 0.02 0.43 8.03 -51.93 -0.42 0.02 16 44 H 0.38 10.59 7.60 -40.82 -0.31 10.28 16 45 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 362.06 15.07 5.46 5.46 Total: -1.00 -34.10 362.06 -9.67 -43.78 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -8.04 Total: 6.05 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -2.05 Total: -4.42 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: -0.10 Total: -58.12 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.08 Total: -10.97 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.02 Total: 18.23 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.10 -9.67 -43.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277932509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.152 kcal (2) G-P(sol) polarization free energy of solvation -34.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds