Wall clock time and date at job start Tue Mar 31 2020 01:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47163 * 2 1 4 4 C 1.52999 * 109.47163 * 180.02562 * 3 2 1 5 5 H 1.08994 * 115.56270 * 29.30829 * 4 3 2 6 6 C 1.53005 * 117.49816 * 243.61986 * 4 3 2 7 7 C 1.52996 * 59.99912 * 252.51255 * 6 4 3 8 8 H 1.08999 * 117.50090 * 107.51574 * 7 6 4 9 9 C 1.50706 * 117.49617 * 252.50921 * 7 6 4 10 10 O 1.21280 * 119.99651 * 68.61177 * 9 7 6 11 11 N 1.34775 * 120.00164 * 248.60884 * 9 7 6 12 12 C 1.47422 * 125.64686 * 4.97954 * 11 9 7 13 13 C 1.54912 * 104.83029 * 204.08857 * 12 11 9 14 14 C 1.55155 * 101.58295 * 322.99226 * 13 12 11 15 15 C 1.47022 * 125.64927 * 184.93571 * 11 9 7 16 16 H 1.09008 * 109.88025 * 59.40588 * 15 11 9 17 17 C 1.53002 * 109.88169 * 298.39836 * 15 11 9 18 18 N 1.46497 * 109.46824 * 175.25287 * 17 15 11 19 19 C 1.36941 * 119.99907 * 174.93422 * 18 17 15 20 20 H 1.08002 * 120.00012 * 359.97438 * 19 18 17 21 21 C 1.38814 * 120.00204 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99623 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00191 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47328 * 59.99999 * 23 21 19 25 25 H 1.48499 * 109.47321 * 180.02562 * 23 21 19 26 26 H 1.48508 * 109.46853 * 299.99963 * 23 21 19 27 27 H 1.09001 * 109.47260 * 60.00004 * 1 2 3 28 28 H 1.08995 * 109.47485 * 180.02562 * 1 2 3 29 29 H 1.09012 * 109.47398 * 300.00312 * 1 2 3 30 30 H 1.08996 * 109.47111 * 239.99860 * 2 1 3 31 31 H 1.09001 * 109.46737 * 120.00048 * 2 1 3 32 32 H 1.09004 * 109.47229 * 60.00235 * 3 2 1 33 33 H 1.09001 * 109.47029 * 300.00137 * 3 2 1 34 34 H 1.08999 * 117.49618 * 145.02101 * 6 4 3 35 35 H 1.08999 * 117.51648 * 359.97438 * 6 4 3 36 36 H 1.08998 * 110.36933 * 322.93313 * 12 11 9 37 37 H 1.09000 * 110.36502 * 85.14280 * 12 11 9 38 38 H 1.09000 * 110.99984 * 81.06690 * 13 12 11 39 39 H 1.09001 * 111.00418 * 204.87448 * 13 12 11 40 40 H 1.08992 * 110.72150 * 277.13970 * 14 13 12 41 41 H 1.09005 * 110.71661 * 153.86164 * 14 13 12 42 42 H 1.09001 * 109.47082 * 55.25335 * 17 15 11 43 43 H 1.08995 * 109.46840 * 295.24816 * 17 15 11 44 44 H 0.97004 * 120.00526 * 354.92882 * 18 17 15 45 45 H 0.96998 * 119.99252 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 4.0401 0.5852 -0.4823 6 6 4.2770 2.0453 1.2150 7 6 4.2763 2.7945 -0.1190 8 1 3.6514 3.6842 -0.1963 9 6 5.5689 2.8389 -0.8926 10 8 6.0113 1.8264 -1.3928 11 7 6.2332 4.0037 -1.0288 12 6 5.8672 5.2811 -0.3904 13 6 6.4940 6.3707 -1.2958 14 6 7.8293 5.6993 -1.7123 15 6 7.4433 4.2105 -1.8377 16 1 7.2390 3.9646 -2.8799 17 6 8.5790 3.3321 -1.3091 18 7 9.7442 3.4593 -2.1879 19 6 10.9216 2.8431 -1.8573 20 1 10.9913 2.2637 -0.9485 21 6 12.0256 2.9631 -2.6903 22 7 11.9407 3.6697 -3.7976 23 14 13.6314 2.1220 -2.2397 24 1 13.4125 0.6564 -2.1432 25 1 14.6479 2.4034 -3.2850 26 1 14.1106 2.6381 -0.9322 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 5.2122 1.5845 1.5330 35 1 3.6523 2.4424 2.0152 36 1 4.7833 5.3922 -0.3579 37 1 6.2837 5.3356 0.6154 38 1 5.8662 6.5645 -2.1655 39 1 6.6752 7.2878 -0.7352 40 1 8.5873 5.8375 -0.9413 41 1 8.1753 6.0900 -2.6693 42 1 8.2532 2.2921 -1.2857 43 1 8.8468 3.6517 -0.3021 44 1 9.6817 3.9799 -3.0040 45 1 12.7123 3.7538 -4.3793 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277932509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:25 Heat of formation + Delta-G solvation = -35.970522 kcal Electronic energy + Delta-G solvation = -22053.463772 eV Core-core repulsion = 18877.381337 eV Total energy + Delta-G solvation = -3176.082435 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.43359 -39.32439 -37.76996 -36.45209 -34.74087 -33.50150 -32.54267 -30.41761 -28.36733 -26.77677 -25.84365 -24.26596 -23.19381 -22.73232 -21.79657 -21.26764 -19.99857 -19.11846 -18.23274 -17.54735 -16.68146 -16.35832 -16.00093 -15.77086 -15.38463 -15.19561 -15.06396 -14.99013 -14.33765 -14.11423 -13.99686 -13.69153 -13.51006 -13.11743 -13.04002 -12.95218 -12.86765 -12.73951 -12.26255 -12.21252 -12.08053 -11.94971 -11.92406 -11.83451 -11.66757 -11.60535 -11.17320 -11.06239 -10.91284 -10.73089 -9.69108 -9.08226 -8.00861 -5.31256 1.42096 1.46766 1.46818 1.53003 1.88379 2.52402 2.85325 3.30756 3.39514 3.64143 3.68643 3.80208 3.84485 3.93344 4.07541 4.14780 4.20495 4.28265 4.30700 4.34510 4.39307 4.50853 4.64891 4.72422 4.82341 4.83423 4.86553 4.92437 4.95967 5.02118 5.02592 5.08770 5.11275 5.13763 5.22525 5.33840 5.37758 5.38846 5.41823 5.46519 5.53089 6.20362 6.56417 7.16181 7.26654 7.97448 8.25709 9.22295 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020965 B = 0.003456 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.265041 B = 8099.754861 C = 9022.536111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.079 4.079 4 C -0.125 4.125 5 H 0.083 0.917 6 C -0.133 4.133 7 C -0.183 4.183 8 H 0.157 0.843 9 C 0.540 3.460 10 O -0.591 6.591 11 N -0.609 5.609 12 C 0.097 3.903 13 C -0.119 4.119 14 C -0.117 4.117 15 C 0.135 3.865 16 H 0.048 0.952 17 C 0.154 3.846 18 N -0.736 5.736 19 C -0.254 4.254 20 H 0.066 0.934 21 C -0.070 4.070 22 N -0.966 5.966 23 Si 0.978 3.022 24 H -0.282 1.282 25 H -0.288 1.288 26 H -0.273 1.273 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.141 0.859 36 H 0.111 0.889 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.113 0.887 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.000 1.000 43 H 0.019 0.981 44 H 0.376 0.624 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.736 4.566 11.716 27.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.116 4.116 4 C -0.144 4.144 5 H 0.101 0.899 6 C -0.171 4.171 7 C -0.203 4.203 8 H 0.174 0.826 9 C 0.330 3.670 10 O -0.472 6.472 11 N -0.342 5.342 12 C -0.024 4.024 13 C -0.157 4.157 14 C -0.155 4.155 15 C 0.031 3.969 16 H 0.067 0.933 17 C 0.026 3.974 18 N -0.380 5.380 19 C -0.385 4.385 20 H 0.084 0.916 21 C -0.263 4.263 22 N -0.616 5.616 23 Si 0.806 3.194 24 H -0.209 1.209 25 H -0.213 1.213 26 H -0.199 1.199 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.159 0.841 36 H 0.129 0.871 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.131 0.869 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.018 0.982 43 H 0.037 0.963 44 H 0.208 0.792 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -24.449 3.881 11.573 27.326 hybrid contribution 1.600 -0.702 -0.698 1.882 sum -22.848 3.179 10.875 25.504 Atomic orbital electron populations 1.21756 0.94678 1.01973 1.02303 1.21515 0.96613 0.96478 1.01715 1.21210 0.89562 0.97591 1.03275 1.22462 0.96226 0.94179 1.01486 0.89903 1.23193 1.02568 1.00866 0.90446 1.22300 0.95424 1.00250 1.02342 0.82560 1.20287 0.85566 0.81250 0.79863 1.90713 1.70017 1.35160 1.51279 1.48598 1.26504 1.10659 1.48433 1.22662 1.02275 0.80632 0.96812 1.22828 0.94325 0.98169 1.00366 1.22562 0.99028 0.91046 1.02879 1.21558 0.84409 0.97040 0.93904 0.93344 1.20931 0.86937 0.96435 0.93048 1.42321 1.08163 1.61672 1.25814 1.19516 0.89591 1.24457 1.04966 0.91558 1.25604 1.01702 1.01839 0.97154 1.69808 1.31108 1.46126 1.14562 0.85155 0.78879 0.78062 0.77304 1.20871 1.21333 1.19912 0.92616 0.92624 0.91709 0.93337 0.91849 0.89314 0.91206 0.90432 0.84112 0.87076 0.90215 0.89604 0.86879 0.91212 0.90547 0.98238 0.96303 0.79188 0.93670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 71.98 0.71 -0.96 16 2 C -0.13 -1.82 5.89 30.59 0.18 -1.64 16 3 C -0.08 -1.10 5.50 30.59 0.17 -0.94 16 4 C -0.12 -2.58 5.25 -10.79 -0.06 -2.63 16 5 H 0.08 2.32 7.60 -2.39 -0.02 2.30 16 6 C -0.13 -2.40 9.88 30.59 0.30 -2.10 16 7 C -0.18 -3.86 5.22 -11.54 -0.06 -3.92 16 8 H 0.16 2.13 7.10 -2.39 -0.02 2.12 16 9 C 0.54 17.89 7.45 87.66 0.65 18.54 16 10 O -0.59 -26.50 15.05 -3.03 -0.05 -26.55 16 11 N -0.61 -18.46 3.06 -788.05 -2.42 -20.87 16 12 C 0.10 1.80 6.74 86.86 0.59 2.39 16 13 C -0.12 -2.17 7.08 31.99 0.23 -1.95 16 14 C -0.12 -3.49 6.21 31.78 0.20 -3.29 16 15 C 0.14 5.09 2.95 45.34 0.13 5.22 16 16 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 17 C 0.15 7.41 5.65 86.38 0.49 7.90 16 18 N -0.74 -41.52 5.41 -343.45 -1.86 -43.38 16 19 C -0.25 -15.46 9.99 84.03 0.84 -14.62 16 20 H 0.07 3.97 7.83 -2.91 -0.02 3.94 16 21 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 22 N -0.97 -61.21 13.06 21.65 0.28 -60.93 16 23 Si 0.98 48.34 29.55 68.60 2.03 50.37 16 24 H -0.28 -13.70 7.11 99.48 0.71 -13.00 16 25 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 26 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.09 0.85 7.88 -2.38 -0.02 0.83 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.14 1.47 8.03 -2.39 -0.02 1.45 16 36 H 0.11 1.27 6.96 -2.39 -0.02 1.25 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.07 2.26 7.77 -2.39 -0.02 2.24 16 41 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 42 H 0.00 -0.02 6.56 -2.39 -0.02 -0.03 16 43 H 0.02 0.90 8.03 -2.39 -0.02 0.88 16 44 H 0.38 21.87 7.60 -92.71 -0.70 21.17 16 45 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -79.11 362.06 3.08 -76.03 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: 0.25 Total: 27.12 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 4.84 Total: -1.79 kcal Atomic # 7 Polarization: -121.19 SS G_CDS: -3.99 Total: -125.18 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.05 Total: -26.55 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 2.03 Total: 50.37 kcal Total: -79.11 3.08 -76.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277932509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.061 kcal (2) G-P(sol) polarization free energy of solvation -79.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds