Wall clock time and date at job start Tue Mar 31 2020 01:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46999 * 2 1 4 4 C 1.52999 * 109.46609 * 120.00253 * 2 1 3 5 5 H 1.09007 * 109.47340 * 299.99746 * 4 2 1 6 6 C 1.52996 * 109.47461 * 59.99618 * 4 2 1 7 7 C 1.52997 * 109.47131 * 184.99710 * 6 4 2 8 8 N 1.46506 * 109.47289 * 180.02562 * 7 6 4 9 9 C 1.34774 * 120.00072 * 180.02562 * 8 7 6 10 10 O 1.21617 * 120.00059 * 0.02562 * 9 8 7 11 11 C 1.47106 * 119.99803 * 180.02562 * 9 8 7 12 12 C 1.32609 * 124.62137 * 179.70234 * 11 9 8 13 13 C 1.51107 * 110.76151 * 179.84278 * 12 11 9 14 14 C 1.54581 * 104.89832 * 343.80229 * 13 12 11 15 15 C 1.51108 * 124.61840 * 359.97438 * 11 9 8 16 16 N 1.46501 * 109.46987 * 180.02562 * 4 2 1 17 17 C 1.36937 * 120.00101 * 84.99377 * 16 4 2 18 18 H 1.07997 * 119.99850 * 0.02562 * 17 16 4 19 19 C 1.38819 * 119.99854 * 180.02562 * 17 16 4 20 20 N 1.31615 * 119.99772 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 119.99749 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47322 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47183 * 120.00337 * 21 19 17 24 24 H 1.48500 * 109.47107 * 239.99921 * 21 19 17 25 25 H 1.08996 * 109.47370 * 300.00265 * 1 2 3 26 26 H 1.09007 * 109.46960 * 59.99927 * 1 2 3 27 27 H 1.09002 * 109.47825 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46679 * 239.99578 * 2 1 3 29 29 H 1.09000 * 109.46793 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47481 * 299.99619 * 3 2 1 31 31 H 1.08997 * 109.47256 * 60.00232 * 3 2 1 32 32 H 1.09001 * 109.46997 * 65.00136 * 6 4 2 33 33 H 1.08996 * 109.47452 * 304.99710 * 6 4 2 34 34 H 1.09001 * 109.47289 * 60.00050 * 7 6 4 35 35 H 1.09004 * 109.47261 * 300.00306 * 7 6 4 36 36 H 0.97001 * 119.99251 * 0.02562 * 8 7 6 37 37 H 1.08008 * 124.61919 * 359.97438 * 12 11 9 38 38 H 1.09000 * 110.52096 * 224.85026 * 13 12 11 39 39 H 1.08998 * 110.24609 * 102.61514 * 13 12 11 40 40 H 1.09005 * 110.97906 * 266.70747 * 14 13 12 41 41 H 1.09000 * 110.97966 * 142.91490 * 14 13 12 42 42 H 1.09000 * 110.37164 * 315.44407 * 15 11 9 43 43 H 1.09001 * 110.36419 * 77.76448 * 15 11 9 44 44 H 0.97001 * 119.99956 * 265.00435 * 16 4 2 45 45 H 0.97004 * 119.99573 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6766 -0.2075 2.1393 6 6 1.5298 -2.1638 1.2493 7 6 1.9345 -2.8478 2.5566 8 7 1.4466 -4.2292 2.5564 9 6 1.6867 -5.0289 3.6144 10 8 2.3079 -4.6035 4.5695 11 6 1.1973 -6.4161 3.6139 12 6 1.3855 -7.2818 4.6006 13 6 0.7485 -8.6126 4.2744 14 6 -0.2209 -8.3140 3.1080 15 6 0.4165 -7.0506 2.4864 16 7 3.5049 -0.7208 1.2496 17 6 4.1891 0.3541 1.7511 18 1 3.6487 1.2014 2.1467 19 6 5.5773 0.3548 1.7509 20 7 6.2358 -0.6776 1.2684 21 14 6.5106 1.8208 2.4356 22 1 5.5452 2.8427 2.9141 23 1 7.3647 1.3793 3.5673 24 1 7.3640 2.4058 1.3704 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3635 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.9645 -2.7028 0.4075 33 1 0.4435 -2.1650 1.1597 34 1 1.5000 -2.3087 3.3984 35 1 3.0209 -2.8465 2.6462 36 1 0.9508 -4.5683 1.7947 37 1 1.9194 -7.0645 5.5140 38 1 0.1998 -8.9949 5.1352 39 1 1.5089 -9.3283 3.9618 40 1 -1.2241 -8.1027 3.4785 41 1 -0.2359 -9.1362 2.3926 42 1 -0.3577 -6.3704 2.1312 43 1 1.0846 -7.3255 1.6701 44 1 3.9903 -1.4819 0.8945 45 1 7.2058 -0.6773 1.2686 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283442188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:56 Heat of formation + Delta-G solvation = -33.764776 kcal Electronic energy + Delta-G solvation = -22042.006996 eV Core-core repulsion = 18866.020209 eV Total energy + Delta-G solvation = -3175.986787 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.87723 -37.95373 -37.28046 -34.63223 -33.02784 -31.25821 -29.87584 -29.19138 -28.43776 -26.32794 -25.21938 -23.08417 -22.01132 -21.20251 -20.75507 -19.24981 -18.60760 -17.24530 -17.04317 -15.98454 -15.53604 -15.24451 -14.72384 -14.49459 -13.94341 -13.68310 -13.51113 -13.32208 -13.02221 -12.78613 -12.69486 -12.18293 -11.98629 -11.85170 -11.68681 -11.60762 -11.47176 -11.42517 -11.15933 -10.89276 -10.75561 -10.56150 -10.41322 -10.24026 -10.00706 -9.94171 -9.62629 -9.42602 -9.11563 -8.81909 -8.70168 -6.89932 -5.72023 -2.99399 1.36372 3.41268 3.45788 3.46729 3.52891 3.54739 4.29679 4.37462 4.63521 4.71439 4.90280 5.09363 5.25138 5.39794 5.39829 5.43719 5.50733 5.51915 5.55555 5.59722 5.68910 5.73411 5.74046 5.89515 5.94589 6.04685 6.16447 6.20517 6.26821 6.29702 6.40559 6.41711 6.47500 6.59672 6.69885 6.73385 6.79013 6.85476 7.15047 7.35324 7.73731 7.76710 8.44607 8.46250 9.57796 10.14689 10.49445 11.50619 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017538 B = 0.003855 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.153368 B = 7261.204521 C = 8486.061730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.186 3.814 5 H 0.049 0.951 6 C -0.136 4.136 7 C 0.122 3.878 8 N -0.723 5.723 9 C 0.558 3.442 10 O -0.540 6.540 11 C -0.190 4.190 12 C -0.082 4.082 13 C -0.106 4.106 14 C -0.123 4.123 15 C -0.092 4.092 16 N -0.721 5.721 17 C -0.230 4.230 18 H 0.072 0.928 19 C -0.014 4.014 20 N -0.931 5.931 21 Si 0.901 3.099 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.293 1.293 25 H 0.048 0.952 26 H 0.042 0.958 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.029 0.971 31 H 0.040 0.960 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.396 0.604 37 H 0.138 0.862 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.383 0.617 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.628 -13.257 -0.260 20.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.132 4.132 3 C -0.198 4.198 4 C 0.075 3.925 5 H 0.067 0.933 6 C -0.174 4.174 7 C -0.001 4.001 8 N -0.373 5.373 9 C 0.345 3.655 10 O -0.418 6.418 11 C -0.193 4.193 12 C -0.101 4.101 13 C -0.143 4.143 14 C -0.160 4.160 15 C -0.129 4.129 16 N -0.362 5.362 17 C -0.362 4.362 18 H 0.090 0.910 19 C -0.210 4.210 20 N -0.580 5.580 21 Si 0.732 3.268 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.220 1.220 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.229 0.771 37 H 0.155 0.845 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.217 0.783 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.107 -12.754 0.506 19.777 hybrid contribution 0.579 0.482 -0.195 0.779 sum -14.527 -12.272 0.311 19.020 Atomic orbital electron populations 1.21938 0.97164 1.00611 1.00732 1.21772 0.93258 0.97723 1.00486 1.21832 1.04274 0.94861 0.98814 1.20181 0.86020 0.91080 0.95221 0.93330 1.22127 1.00441 0.98259 0.96589 1.21463 1.01263 0.79295 0.98095 1.46018 1.57531 1.13852 1.19890 1.17971 0.79686 0.85014 0.82800 1.90823 1.40582 1.75700 1.34714 1.21922 1.04537 0.94185 0.98617 1.24023 0.94731 0.93737 0.97628 1.21467 0.98428 0.95557 0.98877 1.22424 0.98810 0.97449 0.97361 1.21253 0.98476 0.96520 0.96629 1.42452 0.98936 1.21100 1.73723 1.19242 0.88809 0.96227 1.31881 0.90981 1.24708 0.96485 0.97727 1.02032 1.69663 1.06681 1.29865 1.51793 0.86206 0.80090 0.82208 0.78272 1.20566 1.21964 1.22031 0.93288 0.93843 0.93224 0.92211 0.89491 0.95223 0.94127 0.91677 0.91569 0.91878 0.89715 0.77068 0.84475 0.90343 0.89755 0.90877 0.90572 0.90834 0.90154 0.78320 0.93675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.85 37.16 0.33 -1.67 16 2 C -0.11 -1.89 2.69 -90.62 -0.24 -2.14 16 3 C -0.14 -2.59 8.26 37.16 0.31 -2.29 16 4 C 0.19 3.49 2.02 -67.93 -0.14 3.35 16 5 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 6 C -0.14 -2.08 4.65 -26.73 -0.12 -2.21 16 7 C 0.12 2.08 5.56 -4.04 -0.02 2.06 16 8 N -0.72 -10.35 5.55 -61.49 -0.34 -10.69 16 9 C 0.56 8.99 7.79 -12.66 -0.10 8.89 16 10 O -0.54 -11.20 16.77 5.26 0.09 -11.12 16 11 C -0.19 -2.29 6.09 -102.73 -0.63 -2.92 16 12 C -0.08 -0.89 10.43 -36.01 -0.38 -1.26 16 13 C -0.11 -0.79 6.80 -26.85 -0.18 -0.98 16 14 C -0.12 -0.83 7.16 -25.08 -0.18 -1.01 16 15 C -0.09 -0.78 6.02 -26.86 -0.16 -0.94 16 16 N -0.72 -17.17 4.45 -53.42 -0.24 -17.41 16 17 C -0.23 -6.16 7.57 -15.06 -0.11 -6.27 16 18 H 0.07 1.90 7.40 -52.49 -0.39 1.51 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -28.00 13.06 55.49 0.72 -27.28 16 21 Si 0.90 22.53 29.55 -169.99 -5.02 17.51 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.60 6.32 -51.93 -0.33 0.27 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.09 1.91 6.01 -51.93 -0.31 1.60 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.85 6.17 -51.93 -0.32 0.53 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.08 1.80 7.75 -51.93 -0.40 1.40 16 36 H 0.40 4.34 7.48 -40.82 -0.31 4.03 16 37 H 0.14 1.57 8.03 -52.48 -0.42 1.15 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.55 7.83 -51.93 -0.41 0.14 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.38 9.86 7.80 -40.82 -0.32 9.54 16 45 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 358.99 15.07 5.41 5.41 Total: -1.00 -32.01 358.99 -8.94 -40.95 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -7.83 Total: 10.49 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -1.73 Total: -7.86 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: 0.15 Total: -55.38 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.01 -8.94 -40.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283442188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.184 kcal (2) G-P(sol) polarization free energy of solvation -32.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds