Wall clock time and date at job start Tue Mar 31 2020 01:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46999 * 2 1 4 4 C 1.52999 * 109.46609 * 120.00253 * 2 1 3 5 5 H 1.09007 * 109.47340 * 299.99746 * 4 2 1 6 6 C 1.52996 * 109.47461 * 59.99618 * 4 2 1 7 7 C 1.52997 * 109.47131 * 184.99710 * 6 4 2 8 8 N 1.46506 * 109.47289 * 180.02562 * 7 6 4 9 9 C 1.34774 * 120.00072 * 180.02562 * 8 7 6 10 10 O 1.21617 * 120.00059 * 0.02562 * 9 8 7 11 11 C 1.47106 * 119.99803 * 180.02562 * 9 8 7 12 12 C 1.32609 * 124.62137 * 179.70234 * 11 9 8 13 13 C 1.51107 * 110.76151 * 179.84278 * 12 11 9 14 14 C 1.54581 * 104.89832 * 343.80229 * 13 12 11 15 15 C 1.51108 * 124.61840 * 359.97438 * 11 9 8 16 16 N 1.46501 * 109.46987 * 180.02562 * 4 2 1 17 17 C 1.36937 * 120.00101 * 84.99377 * 16 4 2 18 18 H 1.07997 * 119.99850 * 0.02562 * 17 16 4 19 19 C 1.38819 * 119.99854 * 180.02562 * 17 16 4 20 20 N 1.31615 * 119.99772 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 119.99749 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47322 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47183 * 120.00337 * 21 19 17 24 24 H 1.48500 * 109.47107 * 239.99921 * 21 19 17 25 25 H 1.08996 * 109.47370 * 300.00265 * 1 2 3 26 26 H 1.09007 * 109.46960 * 59.99927 * 1 2 3 27 27 H 1.09002 * 109.47825 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46679 * 239.99578 * 2 1 3 29 29 H 1.09000 * 109.46793 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47481 * 299.99619 * 3 2 1 31 31 H 1.08997 * 109.47256 * 60.00232 * 3 2 1 32 32 H 1.09001 * 109.46997 * 65.00136 * 6 4 2 33 33 H 1.08996 * 109.47452 * 304.99710 * 6 4 2 34 34 H 1.09001 * 109.47289 * 60.00050 * 7 6 4 35 35 H 1.09004 * 109.47261 * 300.00306 * 7 6 4 36 36 H 0.97001 * 119.99251 * 0.02562 * 8 7 6 37 37 H 1.08008 * 124.61919 * 359.97438 * 12 11 9 38 38 H 1.09000 * 110.52096 * 224.85026 * 13 12 11 39 39 H 1.08998 * 110.24609 * 102.61514 * 13 12 11 40 40 H 1.09005 * 110.97906 * 266.70747 * 14 13 12 41 41 H 1.09000 * 110.97966 * 142.91490 * 14 13 12 42 42 H 1.09000 * 110.37164 * 315.44407 * 15 11 9 43 43 H 1.09001 * 110.36419 * 77.76448 * 15 11 9 44 44 H 0.97001 * 119.99956 * 265.00435 * 16 4 2 45 45 H 0.97004 * 119.99573 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6766 -0.2075 2.1393 6 6 1.5298 -2.1638 1.2493 7 6 1.9345 -2.8478 2.5566 8 7 1.4466 -4.2292 2.5564 9 6 1.6867 -5.0289 3.6144 10 8 2.3079 -4.6035 4.5695 11 6 1.1973 -6.4161 3.6139 12 6 1.3855 -7.2818 4.6006 13 6 0.7485 -8.6126 4.2744 14 6 -0.2209 -8.3140 3.1080 15 6 0.4165 -7.0506 2.4864 16 7 3.5049 -0.7208 1.2496 17 6 4.1891 0.3541 1.7511 18 1 3.6487 1.2014 2.1467 19 6 5.5773 0.3548 1.7509 20 7 6.2358 -0.6776 1.2684 21 14 6.5106 1.8208 2.4356 22 1 5.5452 2.8427 2.9141 23 1 7.3647 1.3793 3.5673 24 1 7.3640 2.4058 1.3704 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3635 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.9645 -2.7028 0.4075 33 1 0.4435 -2.1650 1.1597 34 1 1.5000 -2.3087 3.3984 35 1 3.0209 -2.8465 2.6462 36 1 0.9508 -4.5683 1.7947 37 1 1.9194 -7.0645 5.5140 38 1 0.1998 -8.9949 5.1352 39 1 1.5089 -9.3283 3.9618 40 1 -1.2241 -8.1027 3.4785 41 1 -0.2359 -9.1362 2.3926 42 1 -0.3577 -6.3704 2.1312 43 1 1.0846 -7.3255 1.6701 44 1 3.9903 -1.4819 0.8945 45 1 7.2058 -0.6773 1.2686 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283442188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:55 Heat of formation + Delta-G solvation = -54.732540 kcal Electronic energy + Delta-G solvation = -22042.916227 eV Core-core repulsion = 18866.020209 eV Total energy + Delta-G solvation = -3176.896018 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.03394 -39.13074 -38.53221 -36.04871 -34.90884 -32.76027 -31.44813 -30.16677 -29.23172 -27.64361 -26.83127 -24.86090 -23.16595 -22.50774 -21.57192 -20.70020 -19.76938 -19.07834 -18.12178 -17.09360 -16.93118 -16.59441 -16.06093 -15.70060 -15.64270 -15.30575 -15.00119 -14.66601 -14.38720 -13.79124 -13.56584 -13.51025 -13.21721 -12.98412 -12.90023 -12.88585 -12.66187 -12.58817 -12.47474 -12.18456 -12.04474 -11.97925 -11.97055 -11.92492 -11.70492 -11.39700 -11.20462 -11.00400 -10.77360 -10.21307 -9.81219 -8.90999 -7.89154 -5.13691 0.37528 1.44730 1.46464 1.54667 2.21177 2.27888 2.58483 3.44344 3.54266 3.66126 3.90714 3.93445 4.08246 4.18519 4.24356 4.27620 4.32573 4.41365 4.53034 4.67709 4.78452 4.79926 4.83219 4.84716 4.91828 4.97677 4.99901 5.04737 5.14894 5.20720 5.23412 5.26105 5.36731 5.36774 5.40429 5.44923 5.47783 5.54373 5.57963 5.71565 5.80958 6.33723 6.57537 7.23544 7.40084 8.17285 8.38881 9.34883 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017538 B = 0.003855 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.153368 B = 7261.204521 C = 8486.061730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C -0.139 4.139 4 C 0.179 3.821 5 H 0.038 0.962 6 C -0.119 4.119 7 C 0.132 3.868 8 N -0.706 5.706 9 C 0.549 3.451 10 O -0.600 6.600 11 C -0.212 4.212 12 C -0.077 4.077 13 C -0.103 4.103 14 C -0.116 4.116 15 C -0.088 4.088 16 N -0.731 5.731 17 C -0.210 4.210 18 H 0.075 0.925 19 C -0.080 4.080 20 N -0.971 5.971 21 Si 0.957 3.043 22 H -0.266 1.266 23 H -0.302 1.302 24 H -0.295 1.295 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.049 0.951 35 H 0.035 0.965 36 H 0.416 0.584 37 H 0.120 0.880 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.371 0.629 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.898 -14.443 -1.377 23.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.126 4.126 3 C -0.196 4.196 4 C 0.070 3.930 5 H 0.056 0.944 6 C -0.157 4.157 7 C 0.008 3.992 8 N -0.357 5.357 9 C 0.339 3.661 10 O -0.483 6.483 11 C -0.215 4.215 12 C -0.097 4.097 13 C -0.139 4.139 14 C -0.153 4.153 15 C -0.125 4.125 16 N -0.370 5.370 17 C -0.343 4.343 18 H 0.093 0.907 19 C -0.272 4.272 20 N -0.623 5.623 21 Si 0.788 3.212 22 H -0.191 1.191 23 H -0.230 1.230 24 H -0.223 1.223 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.125 0.875 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.253 0.747 37 H 0.138 0.862 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.099 0.901 41 H 0.116 0.884 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.203 0.797 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -18.467 -13.933 -0.650 23.143 hybrid contribution 1.520 0.841 0.204 1.750 sum -16.946 -13.092 -0.446 21.419 Atomic orbital electron populations 1.21856 0.93613 1.02447 1.01716 1.21630 0.96108 0.96179 0.98697 1.21769 1.01552 0.96357 0.99936 1.20448 0.83157 0.93594 0.95801 0.94385 1.21999 1.02685 0.95574 0.95441 1.21123 0.98213 0.81026 0.98816 1.45800 1.56991 1.12582 1.20337 1.18749 0.78663 0.86689 0.82021 1.90785 1.43423 1.77166 1.36935 1.21949 1.06460 0.92079 1.01057 1.24371 0.93307 0.95507 0.96496 1.21547 0.98899 0.93408 1.00071 1.22456 0.98628 0.97089 0.97169 1.21313 0.98449 0.97321 0.95372 1.42635 1.01207 1.19835 1.73368 1.19529 0.88968 0.96457 1.29311 0.90737 1.25383 0.97638 1.00153 1.03985 1.69807 1.06188 1.31840 1.54469 0.85292 0.78885 0.79940 0.77121 1.19055 1.22969 1.22271 0.92940 0.92292 0.90984 0.92725 0.93586 0.92995 0.94115 0.90976 0.87507 0.93263 0.94641 0.74670 0.86162 0.88648 0.88416 0.90080 0.88413 0.89564 0.89486 0.79743 0.94539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.85 71.98 0.64 -2.59 16 2 C -0.11 -3.38 2.69 -10.79 -0.03 -3.41 16 3 C -0.14 -4.96 8.26 71.98 0.59 -4.37 16 4 C 0.18 6.60 2.02 44.99 0.09 6.69 16 5 H 0.04 1.50 8.08 -2.38 -0.02 1.48 16 6 C -0.12 -3.46 4.65 30.59 0.14 -3.31 16 7 C 0.13 4.61 5.56 86.38 0.48 5.09 16 8 N -0.71 -19.97 5.55 -466.69 -2.59 -22.55 16 9 C 0.55 18.09 7.79 86.57 0.67 18.76 16 10 O -0.60 -26.42 16.77 -4.08 -0.07 -26.49 16 11 C -0.21 -4.97 6.09 -18.57 -0.11 -5.08 16 12 C -0.08 -1.62 10.43 24.65 0.26 -1.36 16 13 C -0.10 -1.24 6.80 30.52 0.21 -1.03 16 14 C -0.12 -1.13 7.16 31.66 0.23 -0.90 16 15 C -0.09 -1.23 6.02 30.51 0.18 -1.05 16 16 N -0.73 -35.67 4.45 -322.93 -1.44 -37.11 16 17 C -0.21 -11.51 7.57 84.04 0.64 -10.88 16 18 H 0.07 3.97 7.40 -2.91 -0.02 3.95 16 19 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 20 N -0.97 -60.73 13.06 21.65 0.28 -60.45 16 21 Si 0.96 47.69 29.55 68.60 2.03 49.72 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.30 -15.37 7.11 99.48 0.71 -14.66 16 24 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 25 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 27 H 0.07 1.37 6.32 -2.39 -0.02 1.35 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.05 2.02 6.01 -2.39 -0.01 2.00 16 30 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.11 2.30 6.17 -2.39 -0.01 2.28 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.04 1.60 7.75 -2.38 -0.02 1.58 16 36 H 0.42 8.25 7.48 -92.71 -0.69 7.55 16 37 H 0.12 2.87 8.03 -2.91 -0.02 2.84 16 38 H 0.10 0.87 8.14 -2.39 -0.02 0.86 16 39 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.09 0.98 7.83 -2.39 -0.02 0.96 16 43 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.37 19.81 7.80 -92.71 -0.72 19.09 16 45 H 0.25 15.09 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -74.51 358.99 2.23 -72.29 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: -0.45 Total: 32.23 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: 4.46 Total: -7.63 kcal Atomic # 7 Polarization: -116.37 SS G_CDS: -3.74 Total: -120.12 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.07 Total: -26.49 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.72 kcal Total: -74.51 2.23 -72.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283442188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.553 kcal (2) G-P(sol) polarization free energy of solvation -74.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds