Wall clock time and date at job start Tue Mar 31 2020 03:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47389 * 2 1 4 4 H 1.09007 * 109.46826 * 305.00482 * 3 2 1 5 5 C 1.52997 * 109.46778 * 64.99967 * 3 2 1 6 6 C 1.52997 * 109.47378 * 185.00477 * 3 2 1 7 7 C 1.50697 * 109.47281 * 175.00255 * 6 3 2 8 8 O 1.21287 * 119.99954 * 359.97438 * 7 6 3 9 9 N 1.34770 * 120.00348 * 179.97438 * 7 6 3 10 10 C 1.46502 * 120.00477 * 179.97438 * 9 7 6 11 11 C 1.50698 * 109.47056 * 179.97438 * 10 9 7 12 12 C 1.29456 * 117.69195 * 95.00393 * 11 10 9 13 13 C 1.50327 * 123.65001 * 180.85425 * 12 11 10 14 14 N 1.47003 * 109.16370 * 349.02340 * 13 12 11 15 15 C 1.36944 * 121.37539 * 222.96601 * 14 13 12 16 16 H 1.07995 * 120.00111 * 155.96933 * 15 14 13 17 17 C 1.38814 * 119.99471 * 335.97634 * 15 14 13 18 18 N 1.31611 * 120.00469 * 344.50784 * 17 15 14 19 19 Si 1.86803 * 119.99595 * 164.51263 * 17 15 14 20 20 H 1.48500 * 109.47369 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47044 * 119.99708 * 19 17 15 22 22 H 1.48504 * 109.47180 * 239.99858 * 19 17 15 23 23 C 1.47342 * 117.25432 * 42.94906 * 14 13 12 24 24 C 1.49969 * 117.69587 * 274.73836 * 11 10 9 25 25 H 1.09000 * 109.47217 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46938 * 299.99594 * 1 2 3 27 27 H 1.09001 * 109.47413 * 59.99784 * 1 2 3 28 28 H 1.09006 * 109.46587 * 239.99992 * 2 1 3 29 29 H 1.09001 * 109.47413 * 120.00216 * 2 1 3 30 30 H 1.08998 * 109.47180 * 60.00476 * 5 3 2 31 31 H 1.09000 * 109.46801 * 180.02562 * 5 3 2 32 32 H 1.08999 * 109.47817 * 299.99828 * 5 3 2 33 33 H 1.09007 * 109.46723 * 295.00140 * 6 3 2 34 34 H 1.08997 * 109.47455 * 54.99634 * 6 3 2 35 35 H 0.97008 * 119.99944 * 359.97438 * 9 7 6 36 36 H 1.08996 * 109.46915 * 300.00021 * 10 9 7 37 37 H 1.08996 * 109.46883 * 60.00266 * 10 9 7 38 38 H 1.07991 * 118.17488 * 0.87816 * 12 11 10 39 39 H 1.08997 * 109.52087 * 108.92523 * 13 12 11 40 40 H 1.08995 * 109.52299 * 229.11448 * 13 12 11 41 41 H 0.97003 * 120.00383 * 180.02562 * 18 17 15 42 42 H 1.08991 * 109.77847 * 57.80508 * 23 14 13 43 43 H 1.09000 * 109.77964 * 178.62136 * 23 14 13 44 44 H 1.09002 * 109.31535 * 281.29407 * 24 11 10 45 45 H 1.08999 * 109.31086 * 40.72162 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6353 2.1264 1.3073 6 6 3.5648 1.4443 -0.1258 7 6 4.0570 2.8633 -0.2493 8 8 3.2660 3.7826 -0.2382 9 7 5.3761 3.1108 -0.3720 10 6 5.8545 4.4902 -0.4926 11 6 7.3565 4.4920 -0.6151 12 6 7.8629 4.5253 -1.8061 13 6 9.3403 4.5129 -2.0837 14 7 10.0697 4.7234 -0.8249 15 6 11.1497 5.5628 -0.7584 16 1 11.4301 6.0083 0.1845 17 6 11.8839 5.8409 -1.9032 18 7 11.7482 5.0850 -2.9719 19 14 13.0646 7.2883 -1.9267 20 1 13.0329 7.9745 -0.6101 21 1 14.4407 6.8002 -2.1980 22 1 12.6585 8.2412 -2.9909 23 6 9.5906 3.9945 0.3626 24 6 8.1592 4.4612 0.6513 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 1.8932 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 2.0699 1.5874 2.1491 31 1 1.9983 3.1542 1.3072 32 1 0.5490 2.1252 1.3970 33 1 4.0030 0.9834 0.7596 34 1 3.8570 0.8800 -1.0114 35 1 6.0088 2.3755 -0.3805 36 1 5.4168 4.9504 -1.3783 37 1 5.5620 5.0549 0.3926 38 1 7.1864 4.5646 -2.6469 39 1 9.6224 3.5509 -2.5115 40 1 9.5859 5.3105 -2.7848 41 1 12.2615 5.2791 -3.7718 42 1 9.6004 2.9225 0.1661 43 1 10.2296 4.2197 1.2164 44 1 8.1828 5.4598 1.0876 45 1 7.6931 3.7734 1.3569 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284908609.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:57 Heat of formation + Delta-G solvation = -24.752415 kcal Electronic energy + Delta-G solvation = -21814.703867 eV Core-core repulsion = 18639.107886 eV Total energy + Delta-G solvation = -3175.595982 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.90336 -37.89542 -36.53713 -34.86914 -32.91514 -31.21560 -30.66788 -29.74546 -28.11430 -26.57844 -24.56811 -23.63354 -22.74275 -21.15042 -20.60454 -19.92428 -17.73309 -17.15150 -16.07492 -15.84611 -15.48611 -15.25527 -14.93090 -14.41553 -14.15793 -13.84328 -13.78018 -13.48226 -13.27171 -12.98370 -12.64932 -12.31471 -12.14453 -12.08665 -11.92869 -11.58762 -11.54781 -11.33947 -11.02360 -10.93895 -10.81825 -10.77346 -10.75225 -10.41944 -10.30767 -9.85777 -9.75394 -9.58873 -8.92124 -8.71231 -8.07984 -6.78027 -5.82967 -3.21842 2.59390 2.70441 3.35801 3.43699 3.45733 3.56687 4.46793 4.56768 4.61918 4.67850 4.99778 5.05637 5.15409 5.27432 5.33327 5.37178 5.38547 5.46779 5.48892 5.56577 5.58574 5.74987 5.81517 5.84053 5.85990 5.92722 6.00740 6.06048 6.14418 6.22307 6.29999 6.32864 6.46149 6.56921 6.70518 6.83736 7.13915 7.22967 7.30009 7.62405 7.70583 7.79738 8.30831 8.34758 9.16292 9.78986 10.36775 11.27539 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.048897 B = 0.002733 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.489122 B =10244.422880 C =10329.664955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.076 4.076 4 H 0.077 0.923 5 C -0.154 4.154 6 C -0.139 4.139 7 C 0.508 3.492 8 O -0.545 6.545 9 N -0.723 5.723 10 C 0.157 3.843 11 C -0.166 4.166 12 C -0.125 4.125 13 C 0.194 3.806 14 N -0.596 5.596 15 C -0.245 4.245 16 H 0.069 0.931 17 C -0.002 4.002 18 N -0.910 5.910 19 Si 0.905 3.095 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.144 3.856 24 C -0.090 4.090 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.401 0.599 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.041 0.959 40 H 0.093 0.907 41 H 0.254 0.746 42 H 0.023 0.977 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.267 -9.748 5.626 20.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.094 4.094 4 H 0.095 0.905 5 C -0.211 4.211 6 C -0.179 4.179 7 C 0.295 3.705 8 O -0.423 6.423 9 N -0.374 5.374 10 C 0.034 3.966 11 C -0.167 4.167 12 C -0.146 4.146 13 C 0.069 3.931 14 N -0.319 5.319 15 C -0.375 4.375 16 H 0.087 0.913 17 C -0.200 4.200 18 N -0.555 5.555 19 Si 0.735 3.265 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.216 1.216 23 C 0.017 3.983 24 C -0.129 4.129 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.235 0.765 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.112 0.888 39 H 0.059 0.941 40 H 0.111 0.889 41 H 0.064 0.936 42 H 0.041 0.959 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.722 -9.033 5.494 20.636 hybrid contribution 0.952 0.382 -0.214 1.048 sum -16.770 -8.652 5.280 19.594 Atomic orbital electron populations 1.21807 0.95808 1.01355 1.02081 1.21601 0.96118 0.96205 1.01896 1.20906 0.92832 0.95847 0.99862 0.90462 1.21993 1.01017 1.02244 0.95864 1.21780 0.97713 0.94231 1.04153 1.20719 0.82219 0.91579 0.75981 1.90654 1.54731 1.46733 1.50166 1.46260 1.07306 1.09675 1.74151 1.20432 0.92236 0.82351 1.01546 1.20507 0.92624 1.07528 0.96040 1.23280 1.00360 0.95076 0.95859 1.19759 0.83218 1.00824 0.89310 1.44143 1.32347 1.50740 1.04655 1.19229 1.03932 1.18794 0.95514 0.91295 1.24994 0.98280 0.99269 0.97429 1.70011 1.43904 1.37731 1.03858 0.86181 0.80429 0.82347 0.77581 1.20293 1.21735 1.21570 1.20991 0.91960 0.94151 0.91174 1.20784 0.97247 1.00868 0.93975 0.92957 0.92422 0.92743 0.92027 0.91985 0.93480 0.90683 0.92849 0.89019 0.89017 0.76486 0.91806 0.91746 0.88821 0.94117 0.88884 0.93636 0.95871 0.92462 0.91744 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.67 37.16 0.36 -0.71 16 2 C -0.12 -0.88 5.40 -26.73 -0.14 -1.03 16 3 C -0.08 -0.70 2.04 -90.62 -0.18 -0.89 16 4 H 0.08 0.84 7.96 -51.92 -0.41 0.42 16 5 C -0.15 -1.53 8.69 37.16 0.32 -1.21 16 6 C -0.14 -1.26 5.17 -27.89 -0.14 -1.40 16 7 C 0.51 6.51 7.55 -10.99 -0.08 6.42 16 8 O -0.54 -8.87 13.97 5.55 0.08 -8.79 16 9 N -0.72 -9.12 5.55 -61.48 -0.34 -9.46 16 10 C 0.16 2.34 5.66 -5.19 -0.03 2.31 16 11 C -0.17 -2.81 5.22 -100.99 -0.53 -3.33 16 12 C -0.13 -2.34 9.47 -35.78 -0.34 -2.68 16 13 C 0.19 4.51 5.23 -5.10 -0.03 4.49 16 14 N -0.60 -14.66 3.01 -173.56 -0.52 -15.18 16 15 C -0.25 -6.65 9.71 -15.06 -0.15 -6.80 16 16 H 0.07 1.84 7.88 -52.49 -0.41 1.42 16 17 C 0.00 -0.05 5.01 -17.43 -0.09 -0.14 16 18 N -0.91 -25.94 11.08 55.49 0.61 -25.33 16 19 Si 0.90 21.57 29.58 -169.99 -5.03 16.54 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 C 0.14 2.90 6.59 -3.43 -0.02 2.88 16 24 C -0.09 -1.53 5.95 -28.09 -0.17 -1.70 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.40 6.57 -51.93 -0.34 0.06 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.94 5.95 -51.93 -0.31 0.64 16 32 H 0.05 0.48 6.57 -51.93 -0.34 0.14 16 33 H 0.09 0.70 8.14 -51.92 -0.42 0.27 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.40 4.38 8.46 -40.82 -0.35 4.03 16 36 H 0.06 1.00 7.78 -51.93 -0.40 0.59 16 37 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 38 H 0.09 1.59 7.73 -52.49 -0.41 1.18 16 39 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.09 2.43 6.41 -51.93 -0.33 2.10 16 41 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 355.10 15.07 5.35 5.35 Total: -1.00 -30.23 355.10 -8.99 -39.22 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -7.93 Total: 1.43 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -1.22 Total: -3.79 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: -0.25 Total: -49.97 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.08 Total: -8.79 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.23 -8.99 -39.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284908609.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.469 kcal (2) G-P(sol) polarization free energy of solvation -30.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds