Wall clock time and date at job start Tue Mar 31 2020 03:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47389 * 2 1 4 4 H 1.09007 * 109.46826 * 305.00482 * 3 2 1 5 5 C 1.52997 * 109.46778 * 64.99967 * 3 2 1 6 6 C 1.52997 * 109.47378 * 185.00477 * 3 2 1 7 7 C 1.50697 * 109.47281 * 175.00255 * 6 3 2 8 8 O 1.21287 * 119.99954 * 359.97438 * 7 6 3 9 9 N 1.34770 * 120.00348 * 179.97438 * 7 6 3 10 10 C 1.46502 * 120.00477 * 179.97438 * 9 7 6 11 11 C 1.50698 * 109.47056 * 179.97438 * 10 9 7 12 12 C 1.29456 * 117.69195 * 95.00393 * 11 10 9 13 13 C 1.50327 * 123.65001 * 180.85425 * 12 11 10 14 14 N 1.47003 * 109.16370 * 349.02340 * 13 12 11 15 15 C 1.36944 * 121.37539 * 222.96601 * 14 13 12 16 16 H 1.07995 * 120.00111 * 155.96933 * 15 14 13 17 17 C 1.38814 * 119.99471 * 335.97634 * 15 14 13 18 18 N 1.31611 * 120.00469 * 344.50784 * 17 15 14 19 19 Si 1.86803 * 119.99595 * 164.51263 * 17 15 14 20 20 H 1.48500 * 109.47369 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47044 * 119.99708 * 19 17 15 22 22 H 1.48504 * 109.47180 * 239.99858 * 19 17 15 23 23 C 1.47342 * 117.25432 * 42.94906 * 14 13 12 24 24 C 1.49969 * 117.69587 * 274.73836 * 11 10 9 25 25 H 1.09000 * 109.47217 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46938 * 299.99594 * 1 2 3 27 27 H 1.09001 * 109.47413 * 59.99784 * 1 2 3 28 28 H 1.09006 * 109.46587 * 239.99992 * 2 1 3 29 29 H 1.09001 * 109.47413 * 120.00216 * 2 1 3 30 30 H 1.08998 * 109.47180 * 60.00476 * 5 3 2 31 31 H 1.09000 * 109.46801 * 180.02562 * 5 3 2 32 32 H 1.08999 * 109.47817 * 299.99828 * 5 3 2 33 33 H 1.09007 * 109.46723 * 295.00140 * 6 3 2 34 34 H 1.08997 * 109.47455 * 54.99634 * 6 3 2 35 35 H 0.97008 * 119.99944 * 359.97438 * 9 7 6 36 36 H 1.08996 * 109.46915 * 300.00021 * 10 9 7 37 37 H 1.08996 * 109.46883 * 60.00266 * 10 9 7 38 38 H 1.07991 * 118.17488 * 0.87816 * 12 11 10 39 39 H 1.08997 * 109.52087 * 108.92523 * 13 12 11 40 40 H 1.08995 * 109.52299 * 229.11448 * 13 12 11 41 41 H 0.97003 * 120.00383 * 180.02562 * 18 17 15 42 42 H 1.08991 * 109.77847 * 57.80508 * 23 14 13 43 43 H 1.09000 * 109.77964 * 178.62136 * 23 14 13 44 44 H 1.09002 * 109.31535 * 281.29407 * 24 11 10 45 45 H 1.08999 * 109.31086 * 40.72162 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6353 2.1264 1.3073 6 6 3.5648 1.4443 -0.1258 7 6 4.0570 2.8633 -0.2493 8 8 3.2660 3.7826 -0.2382 9 7 5.3761 3.1108 -0.3720 10 6 5.8545 4.4902 -0.4926 11 6 7.3565 4.4920 -0.6151 12 6 7.8629 4.5253 -1.8061 13 6 9.3403 4.5129 -2.0837 14 7 10.0697 4.7234 -0.8249 15 6 11.1497 5.5628 -0.7584 16 1 11.4301 6.0083 0.1845 17 6 11.8839 5.8409 -1.9032 18 7 11.7482 5.0850 -2.9719 19 14 13.0646 7.2883 -1.9267 20 1 13.0329 7.9745 -0.6101 21 1 14.4407 6.8002 -2.1980 22 1 12.6585 8.2412 -2.9909 23 6 9.5906 3.9945 0.3626 24 6 8.1592 4.4612 0.6513 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 1.8932 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 2.0699 1.5874 2.1491 31 1 1.9983 3.1542 1.3072 32 1 0.5490 2.1252 1.3970 33 1 4.0030 0.9834 0.7596 34 1 3.8570 0.8800 -1.0114 35 1 6.0088 2.3755 -0.3805 36 1 5.4168 4.9504 -1.3783 37 1 5.5620 5.0549 0.3926 38 1 7.1864 4.5646 -2.6469 39 1 9.6224 3.5509 -2.5115 40 1 9.5859 5.3105 -2.7848 41 1 12.2615 5.2791 -3.7718 42 1 9.6004 2.9225 0.1661 43 1 10.2296 4.2197 1.2164 44 1 8.1828 5.4598 1.0876 45 1 7.6931 3.7734 1.3569 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284908609.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:57 Heat of formation + Delta-G solvation = -42.324875 kcal Electronic energy + Delta-G solvation = -21815.465866 eV Core-core repulsion = 18639.107886 eV Total energy + Delta-G solvation = -3176.357981 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.94270 -39.40701 -37.36993 -36.26884 -34.51691 -32.71152 -31.62306 -31.35554 -29.17245 -27.94915 -25.93533 -24.70108 -24.28232 -22.80912 -21.54676 -20.69456 -19.50296 -18.29578 -17.31639 -17.16961 -16.86960 -16.57958 -15.97333 -15.62906 -15.47995 -15.24000 -15.05516 -14.80240 -14.50958 -14.10427 -13.89377 -13.63684 -13.35634 -13.26867 -13.00170 -12.82299 -12.76858 -12.62864 -12.61029 -12.20732 -12.15963 -12.09210 -11.73841 -11.70871 -11.51791 -11.37153 -11.26782 -10.77169 -10.68273 -10.02744 -9.64250 -8.75825 -7.89378 -5.30512 1.19563 1.45639 1.47918 1.57811 1.72169 2.50040 2.50686 3.27919 3.62138 3.79742 3.87215 3.92343 3.96582 4.03327 4.31409 4.43247 4.48739 4.53346 4.63484 4.65954 4.72377 4.76426 4.77287 4.83867 4.86765 4.91705 4.95022 5.10108 5.17017 5.20363 5.21109 5.26198 5.33900 5.38214 5.45435 5.47641 5.57139 5.60987 5.63344 5.76744 6.16388 6.33266 6.63799 7.12800 7.32798 7.82844 8.36327 9.19319 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.048897 B = 0.002733 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.489122 B =10244.422880 C =10329.664955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C -0.075 4.075 4 H 0.056 0.944 5 C -0.151 4.151 6 C -0.132 4.132 7 C 0.506 3.494 8 O -0.583 6.583 9 N -0.716 5.716 10 C 0.167 3.833 11 C -0.138 4.138 12 C -0.144 4.144 13 C 0.205 3.795 14 N -0.616 5.616 15 C -0.255 4.255 16 H 0.070 0.930 17 C -0.055 4.055 18 N -0.939 5.939 19 Si 0.967 3.033 20 H -0.267 1.267 21 H -0.292 1.292 22 H -0.292 1.292 23 C 0.139 3.861 24 C -0.084 4.084 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.412 0.588 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.111 0.889 39 H 0.015 0.985 40 H 0.056 0.944 41 H 0.250 0.750 42 H 0.030 0.970 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.345 -10.916 7.111 22.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.094 4.094 4 H 0.074 0.926 5 C -0.209 4.209 6 C -0.171 4.171 7 C 0.295 3.705 8 O -0.463 6.463 9 N -0.368 5.368 10 C 0.044 3.956 11 C -0.138 4.138 12 C -0.164 4.164 13 C 0.080 3.920 14 N -0.340 5.340 15 C -0.385 4.385 16 H 0.088 0.912 17 C -0.250 4.250 18 N -0.586 5.586 19 Si 0.796 3.204 20 H -0.192 1.192 21 H -0.219 1.219 22 H -0.219 1.219 23 C 0.013 3.987 24 C -0.122 4.122 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.249 0.751 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.129 0.871 39 H 0.033 0.967 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.048 0.952 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.807 -10.230 7.007 22.527 hybrid contribution 1.239 0.712 -0.594 1.548 sum -17.568 -9.518 6.413 20.984 Atomic orbital electron populations 1.21825 0.95790 1.01942 1.01696 1.21563 0.96131 0.94701 1.02876 1.20890 0.93067 0.96893 0.98558 0.92576 1.21947 1.01353 1.00707 0.96854 1.21829 0.97371 0.91721 1.06211 1.21395 0.81617 0.92797 0.74727 1.90653 1.55602 1.48284 1.51766 1.46128 1.07746 1.08925 1.74028 1.20169 0.90296 0.83851 1.01313 1.20620 0.93831 1.04169 0.95225 1.22935 0.97704 0.98315 0.97458 1.19397 0.86053 0.98174 0.88370 1.44429 1.32201 1.51201 1.06183 1.19546 1.04389 1.19043 0.95550 0.91192 1.25739 1.00301 1.01642 0.97321 1.70164 1.45003 1.39213 1.04236 0.85203 0.78192 0.79356 0.77693 1.19152 1.21863 1.21890 1.21186 0.93750 0.94150 0.89583 1.20722 0.95320 1.01531 0.94642 0.91871 0.92661 0.93359 0.91125 0.90853 0.92220 0.93581 0.92445 0.86660 0.86903 0.75148 0.92495 0.91705 0.87145 0.96731 0.92603 0.94121 0.95192 0.92258 0.91979 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.67 71.98 0.70 -1.17 16 2 C -0.12 -1.37 5.40 30.59 0.17 -1.20 16 3 C -0.08 -1.25 2.04 -10.80 -0.02 -1.27 16 4 H 0.06 1.17 7.96 -2.38 -0.02 1.15 16 5 C -0.15 -2.80 8.69 71.98 0.63 -2.17 16 6 C -0.13 -1.99 5.17 29.85 0.15 -1.83 16 7 C 0.51 11.89 7.55 87.66 0.66 12.55 16 8 O -0.58 -18.46 13.97 -3.05 -0.04 -18.51 16 9 N -0.72 -16.16 5.55 -466.80 -2.59 -18.75 16 10 C 0.17 4.62 5.66 85.63 0.48 5.11 16 11 C -0.14 -4.39 5.22 -15.14 -0.08 -4.47 16 12 C -0.14 -5.32 9.47 27.11 0.26 -5.06 16 13 C 0.21 9.82 5.23 85.42 0.45 10.27 16 14 N -0.62 -30.55 3.01 -703.03 -2.11 -32.66 16 15 C -0.26 -13.96 9.71 84.03 0.82 -13.15 16 16 H 0.07 3.72 7.88 -2.91 -0.02 3.70 16 17 C -0.06 -3.08 5.01 84.86 0.43 -2.66 16 18 N -0.94 -55.20 11.08 21.65 0.24 -54.96 16 19 Si 0.97 44.94 29.58 68.60 2.03 46.97 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 22 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 23 C 0.14 5.41 6.59 86.32 0.57 5.98 16 24 C -0.08 -2.64 5.95 29.72 0.18 -2.46 16 25 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.05 0.68 6.57 -2.38 -0.02 0.66 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 31 H 0.05 1.13 5.95 -2.39 -0.01 1.12 16 32 H 0.06 0.98 6.57 -2.39 -0.02 0.96 16 33 H 0.12 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.41 7.60 8.46 -92.70 -0.78 6.82 16 36 H 0.06 1.69 7.78 -2.39 -0.02 1.67 16 37 H 0.06 1.84 8.11 -2.39 -0.02 1.82 16 38 H 0.11 3.68 7.73 -2.91 -0.02 3.66 16 39 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.06 3.05 6.41 -2.39 -0.02 3.04 16 41 H 0.25 14.21 8.31 -92.71 -0.77 13.43 16 42 H 0.03 1.13 8.14 -2.39 -0.02 1.12 16 43 H 0.06 2.26 7.96 -2.39 -0.02 2.24 16 44 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -66.87 355.10 3.07 -63.80 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 0.17 Total: 15.63 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 5.38 Total: -1.52 kcal Atomic # 7 Polarization: -101.91 SS G_CDS: -4.46 Total: -106.37 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.04 Total: -18.51 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -66.87 3.07 -63.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284908609.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.473 kcal (2) G-P(sol) polarization free energy of solvation -66.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds