Wall clock time and date at job start Tue Mar 31 2020 01:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.08997 * 115.54794 * 29.41998 * 4 3 2 6 6 C 1.52995 * 117.49819 * 243.74850 * 4 3 2 7 7 C 1.52998 * 117.49812 * 175.08617 * 4 3 2 8 8 H 1.09002 * 117.49575 * 359.97438 * 7 4 3 9 9 C 1.50699 * 117.49970 * 214.97756 * 7 4 3 10 10 O 1.21274 * 120.00019 * 0.02562 * 9 7 4 11 11 N 1.34777 * 119.99736 * 180.02562 * 9 7 4 12 12 C 1.47020 * 125.65279 * 359.69590 * 11 9 7 13 13 C 1.54333 * 107.27013 * 178.84937 * 12 11 9 14 14 C 1.55157 * 103.01620 * 338.14129 * 13 12 11 15 15 H 1.08994 * 111.04022 * 277.21724 * 14 13 12 16 16 C 1.53003 * 111.00083 * 153.38175 * 14 13 12 17 17 N 1.46500 * 109.47511 * 72.80385 * 16 14 13 18 18 C 1.36930 * 120.00289 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99874 * 359.97438 * 18 17 16 20 20 C 1.38817 * 120.00127 * 180.02562 * 18 17 16 21 21 N 1.31617 * 119.99950 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99846 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47181 * 89.99968 * 22 20 18 24 24 H 1.48507 * 109.46605 * 209.99623 * 22 20 18 25 25 H 1.48496 * 109.47483 * 329.99609 * 22 20 18 26 26 C 1.47427 * 125.64578 * 180.02562 * 11 9 7 27 27 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 28 28 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 30 30 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 31 31 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 32 32 H 1.09001 * 109.46801 * 300.00272 * 3 2 1 33 33 H 1.09001 * 109.46998 * 59.99868 * 3 2 1 34 34 H 1.08998 * 117.50115 * 0.02562 * 6 4 3 35 35 H 1.09001 * 117.49606 * 145.02422 * 6 4 3 36 36 H 1.09005 * 109.87989 * 298.39405 * 12 11 9 37 37 H 1.08995 * 109.87981 * 59.55342 * 12 11 9 38 38 H 1.08998 * 110.85081 * 219.67280 * 13 12 11 39 39 H 1.09005 * 110.66732 * 96.52225 * 13 12 11 40 40 H 1.09004 * 109.46964 * 192.80199 * 16 14 13 41 41 H 1.09000 * 109.47024 * 312.79898 * 16 14 13 42 42 H 0.97000 * 119.99358 * 359.97438 * 17 16 14 43 43 H 0.96997 * 120.00094 * 180.02562 * 21 20 18 44 44 H 1.09001 * 110.36715 * 322.93389 * 26 11 9 45 45 H 1.09002 * 110.36753 * 85.14360 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 4.0398 0.5861 -0.4840 6 6 4.2769 2.0426 1.2163 7 6 4.2763 2.7947 -0.1170 8 1 3.6510 3.6842 -0.1935 9 6 5.5688 2.8403 -0.8905 10 8 6.0109 1.8289 -1.3928 11 7 6.2334 4.0052 -1.0242 12 6 5.8098 5.3014 -0.4748 13 6 6.8914 6.3351 -0.8534 14 6 8.1405 5.4532 -1.1172 15 1 8.6497 5.2073 -0.1855 16 6 9.0964 6.1358 -2.0976 17 7 9.7694 7.2511 -1.4272 18 6 10.6776 8.0139 -2.1116 19 1 10.8981 7.7930 -3.1456 20 6 11.3156 9.0703 -1.4762 21 7 11.0473 9.3391 -0.2160 22 14 12.5540 10.1113 -2.4101 23 1 11.8546 11.2492 -3.0591 24 1 13.5753 10.6316 -1.4658 25 1 13.2165 9.2808 -3.4475 26 6 7.5022 4.1920 -1.7513 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.6520 2.4371 2.0176 35 1 5.2121 1.5812 1.5332 36 1 4.8509 5.5908 -0.9050 37 1 5.7267 5.2349 0.6100 38 1 7.0737 7.0253 -0.0297 39 1 6.6058 6.8785 -1.7541 40 1 9.8399 5.4162 -2.4407 41 1 8.5334 6.5117 -2.9519 42 1 9.5716 7.4491 -0.4985 43 1 11.4928 10.0776 0.2279 44 1 8.1508 3.3272 -1.6109 45 1 7.3112 4.3537 -2.8122 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317334331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:41 Heat of formation + Delta-G solvation = -20.112599 kcal Electronic energy + Delta-G solvation = -21425.149668 eV Core-core repulsion = 18249.754884 eV Total energy + Delta-G solvation = -3175.394784 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.28753 -38.33870 -36.90604 -34.68131 -34.14496 -32.21666 -30.23507 -29.12996 -27.83774 -25.87462 -24.01148 -22.58630 -22.35300 -22.05228 -20.77205 -20.05571 -18.94687 -17.40921 -16.97581 -16.23027 -15.76761 -15.40426 -14.88807 -14.63420 -14.28247 -13.74119 -13.65598 -13.47704 -13.33884 -13.09508 -12.78395 -12.66800 -12.49685 -12.35634 -12.21744 -11.63613 -11.61948 -11.34927 -11.19615 -11.13937 -10.87504 -10.68101 -10.50737 -10.48814 -10.38346 -10.24518 -10.06006 -9.81177 -9.69094 -8.89179 -8.60763 -6.94279 -5.78451 -3.07056 2.44363 2.92024 3.42861 3.48246 3.49851 3.61938 4.21100 4.46234 4.53687 4.56478 4.71135 4.75987 4.78852 4.84278 4.95553 4.97949 5.11998 5.21051 5.32731 5.39682 5.44442 5.47595 5.49062 5.53822 5.55724 5.65807 5.70446 5.72921 5.89779 5.90026 5.93700 6.02292 6.03963 6.10674 6.11924 6.23205 6.37952 6.43885 6.71622 6.83258 7.53887 7.68937 8.16200 8.40456 9.51875 10.08831 10.43830 11.44460 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.056120 B = 0.002443 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.814130 B =11458.807352 C =11645.365254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.119 4.119 5 H 0.117 0.883 6 C -0.147 4.147 7 C -0.186 4.186 8 H 0.122 0.878 9 C 0.556 3.444 10 O -0.547 6.547 11 N -0.613 5.613 12 C 0.101 3.899 13 C -0.122 4.122 14 C -0.105 4.105 15 H 0.085 0.915 16 C 0.164 3.836 17 N -0.731 5.731 18 C -0.239 4.239 19 H 0.071 0.929 20 C -0.014 4.014 21 N -0.934 5.934 22 Si 0.908 3.092 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.113 3.887 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.022 0.978 41 H 0.023 0.977 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.077 0.923 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.215 -14.559 2.901 25.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.127 4.127 4 C -0.138 4.138 5 H 0.135 0.865 6 C -0.185 4.185 7 C -0.207 4.207 8 H 0.140 0.860 9 C 0.345 3.655 10 O -0.425 6.425 11 N -0.346 5.346 12 C -0.022 4.022 13 C -0.159 4.159 14 C -0.124 4.124 15 H 0.103 0.897 16 C 0.036 3.964 17 N -0.375 5.375 18 C -0.370 4.370 19 H 0.089 0.911 20 C -0.210 4.210 21 N -0.582 5.582 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.010 4.010 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.040 0.960 41 H 0.041 0.959 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.095 0.905 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.909 -15.100 2.508 25.113 hybrid contribution 0.687 0.954 -0.151 1.185 sum -19.222 -14.147 2.356 23.983 Atomic orbital electron populations 1.21782 0.95872 1.01629 1.01782 1.21503 0.95638 0.96495 1.02368 1.21245 0.91900 0.97377 1.02208 1.22459 0.94647 0.95512 1.01137 0.86469 1.23105 1.03091 1.01998 0.90298 1.22275 0.97576 0.98675 1.02131 0.86044 1.19289 0.84456 0.81762 0.79981 1.90682 1.68826 1.33479 1.49493 1.48452 1.24298 1.08086 1.53764 1.22133 0.98502 0.82947 0.98637 1.22665 0.93379 0.96666 1.03235 1.22566 0.95806 0.93665 1.00399 0.89677 1.20554 0.92581 0.90051 0.93191 1.42306 1.49008 1.33317 1.12878 1.19232 1.14947 1.07718 0.95149 0.91148 1.24741 1.00713 0.99383 0.96186 1.69654 1.46363 1.32040 1.10190 0.86176 0.80916 0.80422 0.78601 1.21733 1.21776 1.20759 1.22268 0.84234 0.98544 0.95954 0.92743 0.92755 0.92779 0.91787 0.91795 0.91412 0.91606 0.87801 0.88303 0.91647 0.91384 0.89460 0.90293 0.96007 0.95947 0.78250 0.93519 0.90491 0.91225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.51 16 2 C -0.12 -0.81 5.89 -26.73 -0.16 -0.97 16 3 C -0.09 -0.65 5.50 -26.73 -0.15 -0.79 16 4 C -0.12 -1.11 5.25 -90.62 -0.48 -1.59 16 5 H 0.12 1.30 7.60 -51.93 -0.39 0.90 16 6 C -0.15 -1.30 9.88 -26.69 -0.26 -1.57 16 7 C -0.19 -1.92 5.26 -91.73 -0.48 -2.41 16 8 H 0.12 1.05 7.74 -51.93 -0.40 0.65 16 9 C 0.56 7.91 7.63 -10.99 -0.08 7.83 16 10 O -0.55 -9.67 16.51 5.56 0.09 -9.58 16 11 N -0.61 -8.37 3.33 -170.50 -0.57 -8.94 16 12 C 0.10 1.15 6.28 -3.06 -0.02 1.13 16 13 C -0.12 -1.67 6.37 -24.89 -0.16 -1.83 16 14 C -0.10 -1.65 3.05 -88.46 -0.27 -1.92 16 15 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 16 C 0.16 3.21 5.71 -4.04 -0.02 3.19 16 17 N -0.73 -18.09 5.55 -59.91 -0.33 -18.42 16 18 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 19 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16 22 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 C 0.11 1.65 6.37 -2.52 -0.02 1.64 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.41 7.88 -51.93 -0.41 0.01 16 34 H 0.10 0.71 8.03 -51.93 -0.42 0.29 16 35 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.64 8.06 -51.93 -0.42 0.22 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.08 1.11 7.91 -51.93 -0.41 0.70 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.02 0.44 7.97 -51.93 -0.41 0.03 16 42 H 0.38 9.90 7.67 -40.82 -0.31 9.59 16 43 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.08 1.19 8.04 -51.93 -0.42 0.77 16 45 H 0.07 1.00 8.04 -51.93 -0.42 0.59 16 LS Contribution 366.56 15.07 5.52 5.52 Total: -1.00 -31.88 366.56 -9.77 -41.65 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -8.21 Total: 4.77 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -1.98 Total: -5.09 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.17 Total: -54.55 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.88 -9.77 -41.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317334331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.536 kcal (2) G-P(sol) polarization free energy of solvation -31.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds