Wall clock time and date at job start Tue Mar 31 2020 01:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.08997 * 115.54794 * 29.41998 * 4 3 2 6 6 C 1.52995 * 117.49819 * 243.74850 * 4 3 2 7 7 C 1.52998 * 117.49812 * 175.08617 * 4 3 2 8 8 H 1.09002 * 117.49575 * 359.97438 * 7 4 3 9 9 C 1.50699 * 117.49970 * 214.97756 * 7 4 3 10 10 O 1.21274 * 120.00019 * 0.02562 * 9 7 4 11 11 N 1.34777 * 119.99736 * 180.02562 * 9 7 4 12 12 C 1.47020 * 125.65279 * 359.69590 * 11 9 7 13 13 C 1.54333 * 107.27013 * 178.84937 * 12 11 9 14 14 C 1.55157 * 103.01620 * 338.14129 * 13 12 11 15 15 H 1.08994 * 111.04022 * 277.21724 * 14 13 12 16 16 C 1.53003 * 111.00083 * 153.38175 * 14 13 12 17 17 N 1.46500 * 109.47511 * 72.80385 * 16 14 13 18 18 C 1.36930 * 120.00289 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99874 * 359.97438 * 18 17 16 20 20 C 1.38817 * 120.00127 * 180.02562 * 18 17 16 21 21 N 1.31617 * 119.99950 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99846 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47181 * 89.99968 * 22 20 18 24 24 H 1.48507 * 109.46605 * 209.99623 * 22 20 18 25 25 H 1.48496 * 109.47483 * 329.99609 * 22 20 18 26 26 C 1.47427 * 125.64578 * 180.02562 * 11 9 7 27 27 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 28 28 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 30 30 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 31 31 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 32 32 H 1.09001 * 109.46801 * 300.00272 * 3 2 1 33 33 H 1.09001 * 109.46998 * 59.99868 * 3 2 1 34 34 H 1.08998 * 117.50115 * 0.02562 * 6 4 3 35 35 H 1.09001 * 117.49606 * 145.02422 * 6 4 3 36 36 H 1.09005 * 109.87989 * 298.39405 * 12 11 9 37 37 H 1.08995 * 109.87981 * 59.55342 * 12 11 9 38 38 H 1.08998 * 110.85081 * 219.67280 * 13 12 11 39 39 H 1.09005 * 110.66732 * 96.52225 * 13 12 11 40 40 H 1.09004 * 109.46964 * 192.80199 * 16 14 13 41 41 H 1.09000 * 109.47024 * 312.79898 * 16 14 13 42 42 H 0.97000 * 119.99358 * 359.97438 * 17 16 14 43 43 H 0.96997 * 120.00094 * 180.02562 * 21 20 18 44 44 H 1.09001 * 110.36715 * 322.93389 * 26 11 9 45 45 H 1.09002 * 110.36753 * 85.14360 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 4.0398 0.5861 -0.4840 6 6 4.2769 2.0426 1.2163 7 6 4.2763 2.7947 -0.1170 8 1 3.6510 3.6842 -0.1935 9 6 5.5688 2.8403 -0.8905 10 8 6.0109 1.8289 -1.3928 11 7 6.2334 4.0052 -1.0242 12 6 5.8098 5.3014 -0.4748 13 6 6.8914 6.3351 -0.8534 14 6 8.1405 5.4532 -1.1172 15 1 8.6497 5.2073 -0.1855 16 6 9.0964 6.1358 -2.0976 17 7 9.7694 7.2511 -1.4272 18 6 10.6776 8.0139 -2.1116 19 1 10.8981 7.7930 -3.1456 20 6 11.3156 9.0703 -1.4762 21 7 11.0473 9.3391 -0.2160 22 14 12.5540 10.1113 -2.4101 23 1 11.8546 11.2492 -3.0591 24 1 13.5753 10.6316 -1.4658 25 1 13.2165 9.2808 -3.4475 26 6 7.5022 4.1920 -1.7513 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.6520 2.4371 2.0176 35 1 5.2121 1.5812 1.5332 36 1 4.8509 5.5908 -0.9050 37 1 5.7267 5.2349 0.6100 38 1 7.0737 7.0253 -0.0297 39 1 6.6058 6.8785 -1.7541 40 1 9.8399 5.4162 -2.4407 41 1 8.5334 6.5117 -2.9519 42 1 9.5716 7.4491 -0.4985 43 1 11.4928 10.0776 0.2279 44 1 8.1508 3.3272 -1.6109 45 1 7.3112 4.3537 -2.8122 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317334331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:40 Heat of formation + Delta-G solvation = -38.393301 kcal Electronic energy + Delta-G solvation = -21425.942379 eV Core-core repulsion = 18249.754884 eV Total energy + Delta-G solvation = -3176.187495 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.34891 -39.37658 -37.89661 -36.44575 -34.73834 -33.90564 -31.87640 -30.33908 -28.51375 -27.33194 -25.42116 -23.97263 -23.50680 -22.70832 -21.49462 -21.35192 -19.95041 -19.16140 -18.27765 -17.45450 -16.76421 -16.54728 -16.01059 -15.71133 -15.53377 -15.21098 -14.91474 -14.74299 -14.51670 -14.06718 -13.93831 -13.87174 -13.57088 -13.10355 -13.01749 -12.97575 -12.88943 -12.75295 -12.23175 -12.20191 -12.12581 -11.93709 -11.80647 -11.70831 -11.65270 -11.63459 -11.19687 -11.02509 -10.93077 -10.79450 -9.71485 -8.99728 -7.95140 -5.23594 1.41270 1.48440 1.49608 1.58112 1.87747 2.56313 2.84274 3.30301 3.39189 3.61137 3.63627 3.74617 3.82345 3.88364 4.11541 4.21081 4.27087 4.28874 4.30970 4.38354 4.43358 4.55380 4.61385 4.64843 4.78060 4.80123 4.83261 4.88583 4.93965 4.97139 5.02933 5.06314 5.07941 5.21984 5.23023 5.26305 5.37479 5.38983 5.42283 5.50447 5.53032 6.27213 6.47496 7.06941 7.34301 8.08701 8.33405 9.28201 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.056120 B = 0.002443 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.814130 B =11458.807352 C =11645.365254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.083 4.083 4 C -0.119 4.119 5 H 0.092 0.908 6 C -0.135 4.135 7 C -0.190 4.190 8 H 0.147 0.853 9 C 0.549 3.451 10 O -0.592 6.592 11 N -0.614 5.614 12 C 0.107 3.893 13 C -0.117 4.117 14 C -0.096 4.096 15 H 0.075 0.925 16 C 0.165 3.835 17 N -0.741 5.741 18 C -0.246 4.246 19 H 0.074 0.926 20 C -0.074 4.074 21 N -0.967 5.967 22 Si 0.973 3.027 23 H -0.286 1.286 24 H -0.295 1.295 25 H -0.272 1.272 26 C 0.118 3.882 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.133 0.867 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.017 0.983 41 H 0.028 0.972 42 H 0.376 0.624 43 H 0.252 0.748 44 H 0.064 0.936 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.028 -14.245 3.161 26.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.120 4.120 4 C -0.138 4.138 5 H 0.110 0.890 6 C -0.172 4.172 7 C -0.211 4.211 8 H 0.165 0.835 9 C 0.340 3.660 10 O -0.473 6.473 11 N -0.346 5.346 12 C -0.015 4.015 13 C -0.155 4.155 14 C -0.115 4.115 15 H 0.093 0.907 16 C 0.038 3.962 17 N -0.384 5.384 18 C -0.378 4.378 19 H 0.092 0.908 20 C -0.266 4.266 21 N -0.618 5.618 22 Si 0.802 3.198 23 H -0.213 1.213 24 H -0.222 1.222 25 H -0.197 1.197 26 C -0.006 4.006 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.151 0.849 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.035 0.965 41 H 0.046 0.954 42 H 0.208 0.792 43 H 0.060 0.940 44 H 0.082 0.918 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.745 -14.795 2.748 26.444 hybrid contribution 1.265 0.782 -0.270 1.511 sum -20.480 -14.014 2.478 24.939 Atomic orbital electron populations 1.21767 0.94968 1.01981 1.02166 1.21503 0.96396 0.96281 1.01938 1.21230 0.90004 0.97727 1.03064 1.22462 0.95977 0.94127 1.01261 0.88976 1.23208 1.02809 1.00843 0.90371 1.22317 0.95915 1.00191 1.02673 0.83493 1.20020 0.85407 0.81011 0.79601 1.90659 1.70228 1.34982 1.51436 1.48540 1.23670 1.08973 1.53449 1.22223 0.98536 0.80860 0.99880 1.22610 0.93007 0.96878 1.03026 1.22338 0.95911 0.94395 0.98898 0.90660 1.20651 0.92910 0.88688 0.93980 1.42465 1.49007 1.34271 1.12652 1.19617 1.14967 1.07770 0.95465 0.90788 1.25541 1.02980 1.00963 0.97144 1.69799 1.47674 1.32661 1.11625 0.85150 0.78489 0.78779 0.77391 1.21264 1.22190 1.19702 1.22089 0.84905 0.97329 0.96249 0.92694 0.92497 0.92024 0.92842 0.91730 0.91310 0.89869 0.84852 0.89685 0.88868 0.89533 0.89945 0.90485 0.96488 0.95388 0.79161 0.93958 0.91752 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 71.98 0.71 -0.74 16 2 C -0.12 -1.47 5.89 30.60 0.18 -1.29 16 3 C -0.08 -1.00 5.50 30.60 0.17 -0.83 16 4 C -0.12 -2.06 5.25 -10.80 -0.06 -2.12 16 5 H 0.09 2.08 7.60 -2.39 -0.02 2.06 16 6 C -0.14 -2.07 9.88 30.62 0.30 -1.77 16 7 C -0.19 -3.52 5.26 -11.51 -0.06 -3.58 16 8 H 0.15 1.97 7.74 -2.39 -0.02 1.95 16 9 C 0.55 15.14 7.63 87.66 0.67 15.81 16 10 O -0.59 -21.30 16.51 -3.01 -0.05 -21.35 16 11 N -0.61 -15.96 3.33 -811.75 -2.70 -18.65 16 12 C 0.11 2.16 6.28 86.73 0.54 2.70 16 13 C -0.12 -3.06 6.37 31.79 0.20 -2.86 16 14 C -0.10 -2.99 3.05 -9.39 -0.03 -3.02 16 15 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 16 C 0.16 6.43 5.71 86.38 0.49 6.93 16 17 N -0.74 -36.89 5.55 -343.44 -1.91 -38.80 16 18 C -0.25 -13.66 9.99 84.04 0.84 -12.82 16 19 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 20 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 21 N -0.97 -58.29 13.06 21.65 0.28 -58.01 16 22 Si 0.97 45.83 29.55 68.60 2.03 47.86 16 23 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 24 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 25 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 26 C 0.12 3.42 6.37 86.86 0.55 3.97 16 27 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.08 0.74 7.88 -2.39 -0.02 0.72 16 34 H 0.13 1.28 8.03 -2.39 -0.02 1.26 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.09 1.44 8.06 -2.38 -0.02 1.42 16 37 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.08 2.05 7.91 -2.38 -0.02 2.03 16 40 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.03 1.08 7.97 -2.39 -0.02 1.06 16 42 H 0.38 19.66 7.67 -92.71 -0.71 18.95 16 43 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 44 H 0.06 2.03 8.04 -2.39 -0.02 2.01 16 45 H 0.07 2.07 8.04 -2.39 -0.02 2.05 16 Total: -1.00 -68.91 366.56 2.88 -66.03 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: 0.23 Total: 26.27 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: 4.99 Total: -3.35 kcal Atomic # 7 Polarization: -111.14 SS G_CDS: -4.32 Total: -115.46 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.05 Total: -21.35 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -68.91 2.88 -66.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317334331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.636 kcal (2) G-P(sol) polarization free energy of solvation -68.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds