Wall clock time and date at job start Tue Mar 31 2020 01:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46818 * 2 1 4 4 C 1.52995 * 109.47340 * 119.99983 * 2 1 3 5 5 H 1.09008 * 115.55035 * 274.33359 * 4 2 1 6 6 C 1.52997 * 117.49904 * 128.62316 * 4 2 1 7 7 C 1.53000 * 117.49965 * 59.99971 * 4 2 1 8 8 H 1.09001 * 117.50031 * 359.97438 * 7 4 2 9 9 C 1.50704 * 117.49973 * 214.98012 * 7 4 2 10 10 O 1.21279 * 119.99720 * 0.02562 * 9 7 4 11 11 N 1.34774 * 119.99705 * 179.97438 * 9 7 4 12 12 C 1.46502 * 119.99549 * 180.02562 * 11 9 7 13 13 C 1.53006 * 109.46880 * 180.02562 * 12 11 9 14 14 N 1.46502 * 109.46880 * 180.02562 * 13 12 11 15 15 C 1.36938 * 120.00103 * 269.99664 * 14 13 12 16 16 H 1.07990 * 119.99981 * 141.10951 * 15 14 13 17 17 C 1.38816 * 120.00074 * 321.11392 * 15 14 13 18 18 N 1.31621 * 119.99472 * 339.79761 * 17 15 14 19 19 Si 1.86796 * 119.99936 * 159.79790 * 17 15 14 20 20 H 1.48497 * 109.47155 * 60.00355 * 19 17 15 21 21 H 1.48509 * 109.46772 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47409 * 299.99989 * 19 17 15 23 23 C 1.46497 * 119.99924 * 90.00210 * 14 13 12 24 24 C 1.53006 * 117.49673 * 234.49426 * 23 14 13 25 25 C 1.53011 * 60.03054 * 252.47406 * 24 23 14 26 26 H 1.08995 * 109.47243 * 299.99637 * 1 2 3 27 27 H 1.09000 * 109.47271 * 60.00486 * 1 2 3 28 28 H 1.09009 * 109.46603 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46792 * 240.00111 * 2 1 3 30 30 H 1.09003 * 109.47345 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47464 * 300.00161 * 3 2 1 32 32 H 1.08998 * 109.47348 * 60.00451 * 3 2 1 33 33 H 1.09004 * 117.49664 * 145.02161 * 6 4 2 34 34 H 1.08999 * 117.49967 * 359.97438 * 6 4 2 35 35 H 0.97004 * 120.00298 * 0.02562 * 11 9 7 36 36 H 1.08997 * 109.47459 * 60.00371 * 12 11 9 37 37 H 1.09000 * 109.47138 * 299.99939 * 12 11 9 38 38 H 1.08997 * 109.46883 * 59.99882 * 13 12 11 39 39 H 1.09000 * 109.47074 * 299.99842 * 13 12 11 40 40 H 0.97005 * 119.99117 * 175.03276 * 18 17 15 41 41 H 1.08999 * 115.55225 * 20.16078 * 23 14 13 42 42 H 1.09002 * 117.49962 * 359.97294 * 24 23 14 43 43 H 1.09002 * 117.49721 * 144.97703 * 24 23 14 44 44 H 1.08992 * 117.49528 * 107.50066 * 25 24 23 45 45 H 1.08992 * 117.49669 * 252.52279 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 2.1268 -0.1059 2.1448 6 6 3.0742 -1.8312 1.0513 7 6 1.6358 -2.1852 1.4343 8 1 1.0062 -2.6344 0.6663 9 6 1.3886 -2.6663 2.8409 10 8 1.5118 -1.9013 3.7738 11 7 1.0295 -3.9465 3.0618 12 6 0.7886 -4.4140 4.4291 13 6 0.3986 -5.8932 4.4010 14 7 0.1570 -6.3606 5.7683 15 6 1.1864 -6.8822 6.5055 16 1 1.2624 -6.6601 7.5596 17 6 2.1324 -7.6964 5.8978 18 7 1.8538 -8.2904 4.7568 19 14 3.8006 -7.9488 6.6995 20 1 3.6176 -8.5531 8.0435 21 1 4.6223 -8.8552 5.8576 22 1 4.4881 -6.6395 6.8348 23 6 -1.1858 -6.2701 6.3468 24 6 -1.3320 -5.5366 7.6817 25 6 -1.4586 -7.0606 7.6291 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.8417 -1.9464 1.8168 34 1 3.3909 -2.0480 0.0311 35 1 0.9306 -4.5582 2.3155 36 1 -0.0191 -3.8334 4.8747 37 1 1.6953 -4.2889 5.0210 38 1 1.2066 -6.4736 3.9556 39 1 -0.5081 -6.0187 3.8090 40 1 2.5381 -8.8006 4.2960 41 1 -2.0014 -6.1774 5.6297 42 1 -0.4289 -5.1218 8.1295 43 1 -2.2436 -4.9612 7.8425 44 1 -0.6389 -7.6482 8.0423 45 1 -2.4535 -7.4875 7.7549 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317558837.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:13 Heat of formation + Delta-G solvation = 14.726645 kcal Electronic energy + Delta-G solvation = -21972.063920 eV Core-core repulsion = 18798.179879 eV Total energy + Delta-G solvation = -3173.884041 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.80948 -37.61353 -37.02007 -34.68683 -33.40409 -33.17423 -30.82599 -27.89358 -27.33282 -24.91083 -23.72623 -22.93517 -21.41800 -21.35661 -20.15748 -19.89691 -19.57376 -17.19353 -16.17382 -15.70771 -15.55121 -15.01601 -14.75620 -14.54367 -14.35686 -13.90359 -13.76708 -13.28223 -12.97412 -12.62496 -12.52549 -12.36976 -12.34335 -11.95749 -11.46835 -11.44647 -11.28249 -11.09410 -10.82606 -10.82372 -10.58835 -10.55613 -10.28755 -10.20302 -10.09711 -10.01793 -9.64466 -9.52098 -9.26807 -8.53460 -8.44352 -6.62423 -5.85771 -3.52822 2.79992 3.32490 3.38426 3.42039 3.49634 3.86422 4.39289 4.52112 4.67590 4.76864 4.93211 4.94043 5.12757 5.15927 5.23310 5.28488 5.32877 5.44900 5.48566 5.63811 5.69045 5.72280 5.87138 5.88782 5.92890 6.01709 6.02607 6.10221 6.12583 6.18108 6.30888 6.32978 6.49053 6.51622 6.60259 6.88497 6.93559 7.04535 7.17541 7.46424 7.73256 7.96661 8.40945 8.63490 9.06856 9.67753 10.24764 11.08844 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019376 B = 0.003757 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.767542 B = 7450.677979 C = 8325.616297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.066 4.066 3 C -0.144 4.144 4 C -0.115 4.115 5 H 0.116 0.884 6 C -0.150 4.150 7 C -0.186 4.186 8 H 0.120 0.880 9 C 0.536 3.464 10 O -0.549 6.549 11 N -0.717 5.717 12 C 0.099 3.901 13 C 0.141 3.859 14 N -0.545 5.545 15 C -0.262 4.262 16 H 0.063 0.937 17 C 0.017 3.983 18 N -0.883 5.883 19 Si 0.897 3.103 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.281 1.281 23 C 0.125 3.875 24 C -0.227 4.227 25 C -0.195 4.195 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.398 0.602 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.099 0.901 39 H 0.031 0.969 40 H 0.256 0.744 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.099 0.901 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.821 11.982 -11.046 16.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 C -0.202 4.202 4 C -0.134 4.134 5 H 0.134 0.866 6 C -0.187 4.187 7 C -0.207 4.207 8 H 0.138 0.862 9 C 0.321 3.679 10 O -0.428 6.428 11 N -0.366 5.366 12 C -0.026 4.026 13 C 0.014 3.986 14 N -0.262 5.262 15 C -0.391 4.391 16 H 0.081 0.919 17 C -0.184 4.184 18 N -0.524 5.524 19 Si 0.726 3.274 20 H -0.205 1.205 21 H -0.215 1.215 22 H -0.207 1.207 23 C 0.016 3.984 24 C -0.267 4.267 25 C -0.233 4.233 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.231 0.769 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.117 0.883 39 H 0.050 0.950 40 H 0.066 0.934 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.091 0.909 44 H 0.117 0.883 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.647 12.293 -10.448 16.217 hybrid contribution 0.785 -0.570 0.150 0.981 sum -0.862 11.723 -10.299 15.628 Atomic orbital electron populations 1.21827 0.94864 1.02007 1.01695 1.20734 0.95847 0.96059 0.95827 1.21800 1.01120 0.95463 1.01767 1.22446 1.01360 0.89479 1.00109 0.86561 1.23065 0.90843 1.02077 1.02739 1.22300 1.01068 1.00916 0.96431 0.86174 1.19615 0.76684 0.82239 0.89347 1.90669 1.52290 1.55051 1.44756 1.46029 1.69167 1.10684 1.10766 1.22329 1.00984 0.98481 0.80793 1.21032 1.00733 0.89832 0.87009 1.43184 1.02774 1.67884 1.12319 1.18931 1.03049 1.22999 0.94141 0.91928 1.25202 1.00339 0.94899 0.97948 1.70053 1.32425 1.32012 1.17958 0.86466 0.84096 0.77805 0.79054 1.20494 1.21463 1.20708 1.21167 0.88823 1.00782 0.87610 1.23372 1.01322 0.94412 1.07627 1.23076 1.01113 0.93716 1.05445 0.92413 0.92795 0.92558 0.91131 0.92534 0.92708 0.92461 0.88311 0.88017 0.76894 0.92987 0.91751 0.88324 0.95009 0.93423 0.89407 0.89643 0.90885 0.88302 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.03 37.16 0.34 -0.95 16 2 C -0.07 -0.59 3.07 -90.62 -0.28 -0.86 16 3 C -0.14 -1.15 9.17 37.16 0.34 -0.81 16 4 C -0.12 -1.30 4.66 -90.62 -0.42 -1.73 16 5 H 0.12 1.56 7.64 -51.92 -0.40 1.16 16 6 C -0.15 -1.64 9.88 -26.73 -0.26 -1.90 16 7 C -0.19 -2.29 5.39 -91.77 -0.49 -2.79 16 8 H 0.12 1.22 7.61 -51.93 -0.39 0.82 16 9 C 0.54 9.06 7.61 -10.98 -0.08 8.98 16 10 O -0.55 -11.50 16.26 5.56 0.09 -11.41 16 11 N -0.72 -12.03 5.56 -60.29 -0.33 -12.36 16 12 C 0.10 2.02 6.00 -4.04 -0.02 2.00 16 13 C 0.14 3.09 5.45 -4.04 -0.02 3.07 16 14 N -0.55 -13.18 2.78 -165.61 -0.46 -13.64 16 15 C -0.26 -6.93 8.01 -15.06 -0.12 -7.05 16 16 H 0.06 1.69 7.26 -52.49 -0.38 1.31 16 17 C 0.02 0.45 4.97 -17.43 -0.09 0.37 16 18 N -0.88 -24.24 11.49 55.49 0.64 -23.60 16 19 Si 0.90 21.21 29.60 -169.99 -5.03 16.18 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C 0.13 2.67 6.62 -67.89 -0.45 2.23 16 24 C -0.23 -4.42 10.09 -26.72 -0.27 -4.69 16 25 C -0.19 -3.91 9.82 -26.68 -0.26 -4.18 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.50 7.29 -51.92 -0.38 0.12 16 29 H 0.07 0.56 7.90 -51.93 -0.41 0.15 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.10 0.88 8.05 -51.93 -0.42 0.46 16 35 H 0.40 5.61 8.47 -40.82 -0.35 5.26 16 36 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.10 2.41 5.57 -51.93 -0.29 2.12 16 39 H 0.03 0.64 8.04 -51.93 -0.42 0.23 16 40 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 41 H 0.09 1.72 8.10 -51.93 -0.42 1.30 16 42 H 0.09 1.79 7.99 -51.93 -0.41 1.38 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.10 2.20 6.98 -51.93 -0.36 1.84 16 45 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 367.40 15.07 5.54 5.54 Total: -1.00 -29.87 367.40 -9.66 -39.52 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -7.99 Total: 8.09 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -2.10 Total: -8.31 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: -0.16 Total: -49.61 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.09 Total: -11.41 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.87 -9.66 -39.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317558837.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.248 kcal (2) G-P(sol) polarization free energy of solvation -29.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds