Wall clock time and date at job start Tue Mar 31 2020 01:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46818 * 2 1 4 4 C 1.52995 * 109.47340 * 119.99983 * 2 1 3 5 5 H 1.09008 * 115.55035 * 274.33359 * 4 2 1 6 6 C 1.52997 * 117.49904 * 128.62316 * 4 2 1 7 7 C 1.53000 * 117.49965 * 59.99971 * 4 2 1 8 8 H 1.09001 * 117.50031 * 359.97438 * 7 4 2 9 9 C 1.50704 * 117.49973 * 214.98012 * 7 4 2 10 10 O 1.21279 * 119.99720 * 0.02562 * 9 7 4 11 11 N 1.34774 * 119.99705 * 179.97438 * 9 7 4 12 12 C 1.46502 * 119.99549 * 180.02562 * 11 9 7 13 13 C 1.53006 * 109.46880 * 180.02562 * 12 11 9 14 14 N 1.46502 * 109.46880 * 180.02562 * 13 12 11 15 15 C 1.36938 * 120.00103 * 269.99664 * 14 13 12 16 16 H 1.07990 * 119.99981 * 141.10951 * 15 14 13 17 17 C 1.38816 * 120.00074 * 321.11392 * 15 14 13 18 18 N 1.31621 * 119.99472 * 339.79761 * 17 15 14 19 19 Si 1.86796 * 119.99936 * 159.79790 * 17 15 14 20 20 H 1.48497 * 109.47155 * 60.00355 * 19 17 15 21 21 H 1.48509 * 109.46772 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47409 * 299.99989 * 19 17 15 23 23 C 1.46497 * 119.99924 * 90.00210 * 14 13 12 24 24 C 1.53006 * 117.49673 * 234.49426 * 23 14 13 25 25 C 1.53011 * 60.03054 * 252.47406 * 24 23 14 26 26 H 1.08995 * 109.47243 * 299.99637 * 1 2 3 27 27 H 1.09000 * 109.47271 * 60.00486 * 1 2 3 28 28 H 1.09009 * 109.46603 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46792 * 240.00111 * 2 1 3 30 30 H 1.09003 * 109.47345 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47464 * 300.00161 * 3 2 1 32 32 H 1.08998 * 109.47348 * 60.00451 * 3 2 1 33 33 H 1.09004 * 117.49664 * 145.02161 * 6 4 2 34 34 H 1.08999 * 117.49967 * 359.97438 * 6 4 2 35 35 H 0.97004 * 120.00298 * 0.02562 * 11 9 7 36 36 H 1.08997 * 109.47459 * 60.00371 * 12 11 9 37 37 H 1.09000 * 109.47138 * 299.99939 * 12 11 9 38 38 H 1.08997 * 109.46883 * 59.99882 * 13 12 11 39 39 H 1.09000 * 109.47074 * 299.99842 * 13 12 11 40 40 H 0.97005 * 119.99117 * 175.03276 * 18 17 15 41 41 H 1.08999 * 115.55225 * 20.16078 * 23 14 13 42 42 H 1.09002 * 117.49962 * 359.97294 * 24 23 14 43 43 H 1.09002 * 117.49721 * 144.97703 * 24 23 14 44 44 H 1.08992 * 117.49528 * 107.50066 * 25 24 23 45 45 H 1.08992 * 117.49669 * 252.52279 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 2.1268 -0.1059 2.1448 6 6 3.0742 -1.8312 1.0513 7 6 1.6358 -2.1852 1.4343 8 1 1.0062 -2.6344 0.6663 9 6 1.3886 -2.6663 2.8409 10 8 1.5118 -1.9013 3.7738 11 7 1.0295 -3.9465 3.0618 12 6 0.7886 -4.4140 4.4291 13 6 0.3986 -5.8932 4.4010 14 7 0.1570 -6.3606 5.7683 15 6 1.1864 -6.8822 6.5055 16 1 1.2624 -6.6601 7.5596 17 6 2.1324 -7.6964 5.8978 18 7 1.8538 -8.2904 4.7568 19 14 3.8006 -7.9488 6.6995 20 1 3.6176 -8.5531 8.0435 21 1 4.6223 -8.8552 5.8576 22 1 4.4881 -6.6395 6.8348 23 6 -1.1858 -6.2701 6.3468 24 6 -1.3320 -5.5366 7.6817 25 6 -1.4586 -7.0606 7.6291 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.8417 -1.9464 1.8168 34 1 3.3909 -2.0480 0.0311 35 1 0.9306 -4.5582 2.3155 36 1 -0.0191 -3.8334 4.8747 37 1 1.6953 -4.2889 5.0210 38 1 1.2066 -6.4736 3.9556 39 1 -0.5081 -6.0187 3.8090 40 1 2.5381 -8.8006 4.2960 41 1 -2.0014 -6.1774 5.6297 42 1 -0.4289 -5.1218 8.1295 43 1 -2.2436 -4.9612 7.8425 44 1 -0.6389 -7.6482 8.0423 45 1 -2.4535 -7.4875 7.7549 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317558837.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:12 Heat of formation + Delta-G solvation = -1.849372 kcal Electronic energy + Delta-G solvation = -21972.782710 eV Core-core repulsion = 18798.179879 eV Total energy + Delta-G solvation = -3174.602831 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.07610 -39.00118 -38.42517 -36.28087 -34.98883 -34.20134 -32.68534 -29.60168 -27.99329 -26.65068 -25.10995 -23.78700 -23.03551 -22.95233 -21.73243 -21.25213 -20.59007 -18.60096 -17.91309 -17.33374 -17.05409 -16.39566 -16.22003 -15.89408 -15.65009 -15.48631 -14.90025 -14.46859 -14.32841 -13.97140 -13.78087 -13.57887 -13.41723 -13.20653 -13.00927 -12.98181 -12.72027 -12.43406 -12.19547 -12.16753 -12.07834 -12.03761 -11.82334 -11.55013 -11.41370 -11.22179 -11.04328 -10.96970 -10.79129 -10.45580 -10.05246 -8.56581 -7.84350 -5.56358 1.41806 1.44731 1.50919 1.51032 2.14976 2.46819 2.86843 3.11702 3.41842 3.47751 3.68997 3.77552 3.86109 4.11192 4.19057 4.27331 4.33723 4.36295 4.41141 4.46950 4.49110 4.62173 4.68120 4.76559 4.85642 4.87234 4.93446 4.96788 5.01398 5.05030 5.08234 5.18370 5.23515 5.29467 5.32237 5.42774 5.46229 5.53513 5.55654 5.61924 5.68339 6.40314 6.61826 7.09487 7.28259 7.76370 8.27707 9.04672 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019376 B = 0.003757 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.767542 B = 7450.677979 C = 8325.616297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.060 4.060 3 C -0.144 4.144 4 C -0.113 4.113 5 H 0.088 0.912 6 C -0.138 4.138 7 C -0.190 4.190 8 H 0.151 0.849 9 C 0.530 3.470 10 O -0.596 6.596 11 N -0.709 5.709 12 C 0.122 3.878 13 C 0.149 3.851 14 N -0.564 5.564 15 C -0.267 4.267 16 H 0.049 0.951 17 C -0.023 4.023 18 N -0.905 5.905 19 Si 0.948 3.052 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.286 1.286 23 C 0.101 3.899 24 C -0.210 4.210 25 C -0.190 4.190 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.081 0.919 34 H 0.136 0.864 35 H 0.413 0.587 36 H 0.044 0.956 37 H 0.026 0.974 38 H 0.076 0.924 39 H 0.050 0.950 40 H 0.255 0.745 41 H 0.110 0.890 42 H 0.063 0.937 43 H 0.105 0.895 44 H 0.071 0.929 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.511 12.427 -12.918 18.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.079 4.079 3 C -0.202 4.202 4 C -0.132 4.132 5 H 0.106 0.894 6 C -0.175 4.175 7 C -0.210 4.210 8 H 0.169 0.831 9 C 0.319 3.681 10 O -0.478 6.478 11 N -0.360 5.360 12 C -0.005 4.005 13 C 0.022 3.978 14 N -0.281 5.281 15 C -0.398 4.398 16 H 0.067 0.933 17 C -0.222 4.222 18 N -0.547 5.547 19 Si 0.776 3.224 20 H -0.202 1.202 21 H -0.210 1.210 22 H -0.213 1.213 23 C -0.007 4.007 24 C -0.250 4.250 25 C -0.229 4.229 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.109 0.891 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.154 0.846 35 H 0.250 0.750 36 H 0.062 0.938 37 H 0.045 0.955 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.128 0.872 42 H 0.082 0.918 43 H 0.123 0.877 44 H 0.089 0.911 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.351 12.729 -12.337 17.882 hybrid contribution 0.957 -0.657 0.782 1.400 sum -1.394 12.073 -11.555 16.769 Atomic orbital electron populations 1.21843 0.94825 1.02029 1.01783 1.20757 0.95810 0.96329 0.94981 1.21805 1.01309 0.95016 1.02026 1.22471 1.01502 0.88851 1.00364 0.89380 1.23185 0.89467 1.00953 1.03941 1.22298 1.02961 1.01958 0.93822 0.83113 1.20454 0.75216 0.81500 0.90980 1.90646 1.54161 1.56164 1.46814 1.45888 1.69010 1.11268 1.09786 1.21803 0.98695 0.97669 0.82310 1.20909 1.00668 0.89841 0.86360 1.43378 1.03618 1.68279 1.12866 1.18978 1.04192 1.22691 0.93898 0.93322 1.25738 1.02704 0.95098 0.98635 1.70128 1.32973 1.32778 1.18848 0.85665 0.81016 0.77272 0.78447 1.20152 1.21046 1.21296 1.21479 0.88134 1.02383 0.88683 1.23316 1.01754 0.94357 1.05615 1.23064 1.01727 0.93895 1.04196 0.93984 0.91081 0.92574 0.89098 0.92285 0.91109 0.93567 0.90072 0.84637 0.75041 0.93792 0.95500 0.90583 0.93134 0.93581 0.87191 0.91813 0.87662 0.91072 0.87680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.03 71.98 0.65 -1.62 16 2 C -0.06 -0.92 3.07 -10.79 -0.03 -0.95 16 3 C -0.14 -2.02 9.17 71.98 0.66 -1.36 16 4 C -0.11 -2.42 4.66 -10.80 -0.05 -2.47 16 5 H 0.09 2.42 7.64 -2.38 -0.02 2.40 16 6 C -0.14 -2.75 9.88 30.59 0.30 -2.45 16 7 C -0.19 -4.37 5.39 -11.54 -0.06 -4.43 16 8 H 0.15 2.56 7.61 -2.39 -0.02 2.54 16 9 C 0.53 17.99 7.61 87.66 0.67 18.66 16 10 O -0.60 -25.82 16.26 -3.03 -0.05 -25.87 16 11 N -0.71 -23.70 5.56 -463.05 -2.57 -26.28 16 12 C 0.12 5.07 6.00 86.38 0.52 5.59 16 13 C 0.15 6.57 5.45 86.38 0.47 7.04 16 14 N -0.56 -27.51 2.78 -677.87 -1.88 -29.40 16 15 C -0.27 -14.46 8.01 84.03 0.67 -13.78 16 16 H 0.05 2.72 7.26 -2.92 -0.02 2.69 16 17 C -0.02 -1.25 4.97 84.86 0.42 -0.83 16 18 N -0.90 -50.13 11.49 21.65 0.25 -49.89 16 19 Si 0.95 44.28 29.60 68.60 2.03 46.31 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 22 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 23 C 0.10 4.23 6.62 45.02 0.30 4.52 16 24 C -0.21 -7.94 10.09 30.60 0.31 -7.63 16 25 C -0.19 -7.43 9.82 30.62 0.30 -7.13 16 26 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.86 7.29 -2.38 -0.02 0.84 16 29 H 0.09 1.07 7.90 -2.39 -0.02 1.05 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.08 1.92 8.14 -2.38 -0.02 1.91 16 34 H 0.14 1.81 8.05 -2.39 -0.02 1.79 16 35 H 0.41 11.21 8.47 -92.71 -0.79 10.42 16 36 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.08 3.77 5.57 -2.39 -0.01 3.75 16 39 H 0.05 2.01 8.04 -2.39 -0.02 1.99 16 40 H 0.25 13.64 8.32 -92.70 -0.77 12.86 16 41 H 0.11 4.06 8.10 -2.39 -0.02 4.04 16 42 H 0.06 2.69 7.99 -2.39 -0.02 2.67 16 43 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 44 H 0.07 3.19 6.98 -2.39 -0.02 3.17 16 45 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -66.28 367.40 3.07 -63.21 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: 0.17 Total: 28.75 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: 5.13 Total: -6.84 kcal Atomic # 7 Polarization: -101.35 SS G_CDS: -4.21 Total: -105.56 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.05 Total: -25.87 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -66.28 3.07 -63.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317558837.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.356 kcal (2) G-P(sol) polarization free energy of solvation -66.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds