Wall clock time and date at job start Tue Mar 31 2020 01:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47197 * 2 1 4 4 C 1.52996 * 109.47522 * 119.99889 * 2 1 3 5 5 H 1.08998 * 115.56751 * 275.28135 * 4 2 1 6 6 C 1.53005 * 117.49831 * 129.58659 * 4 2 1 7 7 C 1.53008 * 117.49460 * 60.96529 * 4 2 1 8 8 H 1.09000 * 117.51798 * 214.96946 * 7 4 2 9 9 C 1.50692 * 117.50065 * 0.02562 * 7 4 2 10 10 O 1.21288 * 120.00183 * 45.22024 * 9 7 4 11 11 N 1.34781 * 120.00071 * 225.22410 * 9 7 4 12 12 C 1.46502 * 120.00049 * 180.02562 * 11 9 7 13 13 C 1.52994 * 109.47192 * 179.97438 * 12 11 9 14 14 N 1.46500 * 109.47343 * 179.97438 * 13 12 11 15 15 C 1.36934 * 120.00025 * 269.99629 * 14 13 12 16 16 H 1.08007 * 119.99561 * 142.56781 * 15 14 13 17 17 C 1.38814 * 120.00159 * 322.57348 * 15 14 13 18 18 N 1.31617 * 120.00049 * 338.07602 * 17 15 14 19 19 Si 1.86799 * 119.99910 * 158.07885 * 17 15 14 20 20 H 1.48506 * 109.47124 * 89.99851 * 19 17 15 21 21 H 1.48497 * 109.47075 * 209.99693 * 19 17 15 22 22 H 1.48501 * 109.47403 * 329.99875 * 19 17 15 23 23 C 1.46496 * 119.99764 * 89.99988 * 14 13 12 24 24 C 1.53005 * 117.49896 * 166.16717 * 23 14 13 25 25 C 1.52999 * 60.00047 * 107.48677 * 24 23 14 26 26 H 1.08993 * 109.47146 * 292.41107 * 1 2 3 27 27 H 1.09004 * 109.47115 * 52.41652 * 1 2 3 28 28 H 1.09004 * 109.47036 * 172.41152 * 1 2 3 29 29 H 1.09001 * 109.47399 * 240.00572 * 2 1 3 30 30 H 1.08999 * 109.47217 * 60.00013 * 3 2 1 31 31 H 1.08998 * 109.47481 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47233 * 299.99824 * 3 2 1 33 33 H 1.09004 * 117.49673 * 145.02710 * 6 4 2 34 34 H 1.08997 * 117.50075 * 0.02562 * 6 4 2 35 35 H 0.96995 * 119.99618 * 359.97438 * 11 9 7 36 36 H 1.08994 * 109.47462 * 59.99632 * 12 11 9 37 37 H 1.09001 * 109.46506 * 299.99555 * 12 11 9 38 38 H 1.09004 * 109.47175 * 59.99628 * 13 12 11 39 39 H 1.08997 * 109.46928 * 299.99987 * 13 12 11 40 40 H 0.96991 * 120.00041 * 175.04947 * 18 17 15 41 41 H 1.09006 * 115.56535 * 20.47328 * 23 14 13 42 42 H 1.09000 * 117.49661 * 214.97759 * 24 23 14 43 43 H 1.08997 * 117.49474 * 359.97438 * 24 23 14 44 44 H 1.08998 * 117.49767 * 252.51116 * 25 24 23 45 45 H 1.09001 * 117.49800 * 107.49215 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 2.1116 -0.1101 2.1489 6 6 3.0910 -1.8158 1.0533 7 6 1.6545 -2.1917 1.4228 8 1 1.4725 -2.5483 2.4366 9 6 0.8020 -2.8189 0.3501 10 8 1.0660 -2.6347 -0.8193 11 7 -0.2538 -3.5845 0.6901 12 6 -1.0823 -4.1947 -0.3527 13 6 -2.2042 -5.0068 0.2972 14 7 -3.0330 -5.6165 -0.7456 15 6 -4.1181 -4.9426 -1.2390 16 1 -4.3630 -5.0084 -2.2889 17 6 -4.9033 -4.1749 -0.3899 18 7 -4.8992 -4.4125 0.9046 19 14 -5.9658 -2.8045 -1.0846 20 1 -7.3054 -3.3440 -1.4310 21 1 -6.1122 -1.7294 -0.0708 22 1 -5.3246 -2.2508 -2.3043 23 6 -2.7009 -6.9472 -1.2605 24 6 -3.7616 -7.6661 -2.0967 25 6 -2.5138 -7.0934 -2.7720 26 1 -0.3633 0.3918 0.9500 27 1 -0.3633 0.6268 -0.8144 28 1 -0.3633 -1.0187 -0.1357 29 1 1.8934 -0.5137 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 3.8539 -1.9248 1.8243 34 1 3.4193 -2.0219 0.0346 35 1 -0.4647 -3.7320 1.6253 36 1 -0.4673 -4.8521 -0.9671 37 1 -1.5142 -3.4127 -0.9774 38 1 -2.8194 -4.3496 0.9119 39 1 -1.7718 -5.7886 0.9216 40 1 -5.3910 -3.8317 1.5059 41 1 -2.0706 -7.5580 -0.6139 42 1 -3.8291 -8.7498 -2.0002 43 1 -4.7065 -7.1491 -2.2633 44 1 -2.6379 -6.1995 -3.3832 45 1 -1.7606 -7.8003 -3.1198 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317558838.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:17 Heat of formation + Delta-G solvation = 20.522413 kcal Electronic energy + Delta-G solvation = -22607.068274 eV Core-core repulsion = 19433.435556 eV Total energy + Delta-G solvation = -3173.632718 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.06628 -37.40416 -36.84072 -34.62356 -33.35689 -33.15823 -30.83009 -27.93296 -27.03833 -24.87303 -23.63184 -22.86677 -21.38906 -21.35544 -20.37119 -19.92430 -19.33565 -16.89844 -16.14473 -15.82100 -15.51269 -15.20398 -14.68536 -14.35489 -14.17642 -13.99779 -13.69523 -13.11370 -13.04702 -12.55987 -12.38001 -12.15613 -12.05532 -11.94129 -11.44421 -11.25555 -11.11523 -11.07867 -10.80200 -10.70549 -10.59945 -10.54083 -10.19813 -10.16820 -10.02001 -9.95274 -9.65430 -9.44618 -9.26101 -8.51491 -8.43088 -6.64559 -5.86561 -3.50484 2.75695 3.30616 3.39287 3.44191 3.55572 3.96890 4.40309 4.56759 4.80829 4.87081 4.93001 5.05502 5.18624 5.27548 5.30812 5.32095 5.40466 5.58377 5.69425 5.73271 5.88231 5.89601 5.94606 5.99499 6.02216 6.05613 6.10125 6.17840 6.24692 6.32912 6.48085 6.48738 6.53480 6.55786 6.60156 6.90919 6.93261 7.04719 7.16604 7.46586 7.73307 7.97817 8.39469 8.65712 9.06315 9.68236 10.24350 11.08415 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016503 B = 0.004781 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.256460 B = 5855.388391 C = 6837.400968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.071 4.071 3 C -0.142 4.142 4 C -0.112 4.112 5 H 0.109 0.891 6 C -0.147 4.147 7 C -0.192 4.192 8 H 0.116 0.884 9 C 0.541 3.459 10 O -0.546 6.546 11 N -0.719 5.719 12 C 0.101 3.899 13 C 0.140 3.860 14 N -0.545 5.545 15 C -0.260 4.260 16 H 0.064 0.936 17 C 0.016 3.984 18 N -0.882 5.882 19 Si 0.894 3.106 20 H -0.284 1.284 21 H -0.288 1.288 22 H -0.276 1.276 23 C 0.125 3.875 24 C -0.195 4.195 25 C -0.226 4.226 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.397 0.603 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.100 0.900 39 H 0.031 0.969 40 H 0.255 0.745 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.085 0.915 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.654 5.159 3.539 14.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.089 4.089 3 C -0.199 4.199 4 C -0.131 4.131 5 H 0.127 0.873 6 C -0.184 4.184 7 C -0.213 4.213 8 H 0.134 0.866 9 C 0.327 3.673 10 O -0.425 6.425 11 N -0.369 5.369 12 C -0.024 4.024 13 C 0.013 3.987 14 N -0.261 5.261 15 C -0.389 4.389 16 H 0.081 0.919 17 C -0.184 4.184 18 N -0.523 5.523 19 Si 0.722 3.278 20 H -0.211 1.211 21 H -0.214 1.214 22 H -0.202 1.202 23 C 0.016 3.984 24 C -0.234 4.234 25 C -0.267 4.267 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.230 0.770 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.117 0.883 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.106 0.894 42 H 0.092 0.908 43 H 0.117 0.883 44 H 0.104 0.896 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.637 5.324 2.857 14.007 hybrid contribution -0.768 0.536 0.211 0.960 sum 11.869 5.860 3.067 13.587 Atomic orbital electron populations 1.21890 0.94806 1.02860 1.01013 1.20764 0.96013 0.95270 0.96851 1.21808 1.00655 0.95945 1.01531 1.22402 1.01669 0.88769 1.00238 0.87320 1.23071 0.90061 1.01786 1.03501 1.22354 0.99058 1.00237 0.99680 0.86558 1.19436 0.80654 0.78251 0.88964 1.90664 1.71112 1.61218 1.19496 1.46048 1.29323 1.50622 1.10915 1.22293 0.92449 0.97270 0.90394 1.21037 0.90442 0.95970 0.91275 1.43201 1.27556 1.11703 1.43676 1.18956 1.02818 1.25035 0.92118 0.91858 1.25134 0.96644 1.01186 0.95476 1.70076 1.43285 1.36513 1.02475 0.86460 0.80515 0.82144 0.78667 1.21062 1.21359 1.20165 1.21152 0.99105 0.88534 0.89622 1.23067 0.95203 0.97932 1.07156 1.23370 1.00163 1.02548 1.00639 0.93251 0.92885 0.91727 0.89417 0.92978 0.92857 0.92718 0.88323 0.87704 0.77000 0.93035 0.91749 0.88282 0.95045 0.93493 0.89419 0.90782 0.88304 0.89631 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.75 37.16 0.33 -1.83 16 2 C -0.07 -0.90 2.30 -90.62 -0.21 -1.11 16 3 C -0.14 -1.46 9.17 37.16 0.34 -1.12 16 4 C -0.11 -1.26 5.13 -90.61 -0.46 -1.72 16 5 H 0.11 1.02 8.12 -51.93 -0.42 0.60 16 6 C -0.15 -1.59 9.69 -26.72 -0.26 -1.85 16 7 C -0.19 -2.36 6.10 -91.77 -0.56 -2.92 16 8 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 9 C 0.54 8.82 5.09 -10.99 -0.06 8.76 16 10 O -0.55 -10.70 13.68 5.55 0.08 -10.62 16 11 N -0.72 -11.83 5.56 -60.30 -0.34 -12.16 16 12 C 0.10 2.02 6.00 -4.04 -0.02 2.00 16 13 C 0.14 3.04 5.45 -4.04 -0.02 3.02 16 14 N -0.55 -13.07 2.78 -165.66 -0.46 -13.53 16 15 C -0.26 -6.84 8.06 -15.06 -0.12 -6.96 16 16 H 0.06 1.70 7.21 -52.48 -0.38 1.32 16 17 C 0.02 0.43 4.94 -17.43 -0.09 0.35 16 18 N -0.88 -24.14 11.49 55.49 0.64 -23.50 16 19 Si 0.89 21.15 29.61 -169.99 -5.03 16.12 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C 0.13 2.65 6.61 -67.93 -0.45 2.20 16 24 C -0.19 -3.89 9.80 -26.73 -0.26 -4.15 16 25 C -0.23 -4.39 10.09 -26.73 -0.27 -4.66 16 26 H 0.05 0.65 8.13 -51.93 -0.42 0.23 16 27 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16 28 H 0.06 1.12 5.09 -51.93 -0.26 0.85 16 29 H 0.09 1.32 6.62 -51.93 -0.34 0.98 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.10 1.29 7.78 -51.93 -0.40 0.89 16 35 H 0.40 5.55 8.47 -40.82 -0.35 5.20 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.10 2.41 5.53 -51.93 -0.29 2.12 16 39 H 0.03 0.63 8.04 -51.93 -0.42 0.22 16 40 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 41 H 0.09 1.71 8.10 -51.93 -0.42 1.29 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.10 2.18 6.93 -51.93 -0.36 1.82 16 44 H 0.09 1.79 8.02 -51.93 -0.42 1.37 16 45 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 359.41 15.07 5.42 5.42 Total: -1.00 -29.10 359.41 -9.66 -38.77 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -7.84 Total: 9.52 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -2.12 Total: -10.00 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: -0.16 Total: -49.20 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.08 Total: -10.62 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.10 -9.66 -38.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317558838.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.288 kcal (2) G-P(sol) polarization free energy of solvation -29.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds