Wall clock time and date at job start Tue Mar 31 2020 01:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47197 * 2 1 4 4 C 1.52996 * 109.47522 * 119.99889 * 2 1 3 5 5 H 1.08998 * 115.56751 * 275.28135 * 4 2 1 6 6 C 1.53005 * 117.49831 * 129.58659 * 4 2 1 7 7 C 1.53008 * 117.49460 * 60.96529 * 4 2 1 8 8 H 1.09000 * 117.51798 * 214.96946 * 7 4 2 9 9 C 1.50692 * 117.50065 * 0.02562 * 7 4 2 10 10 O 1.21288 * 120.00183 * 45.22024 * 9 7 4 11 11 N 1.34781 * 120.00071 * 225.22410 * 9 7 4 12 12 C 1.46502 * 120.00049 * 180.02562 * 11 9 7 13 13 C 1.52994 * 109.47192 * 179.97438 * 12 11 9 14 14 N 1.46500 * 109.47343 * 179.97438 * 13 12 11 15 15 C 1.36934 * 120.00025 * 269.99629 * 14 13 12 16 16 H 1.08007 * 119.99561 * 142.56781 * 15 14 13 17 17 C 1.38814 * 120.00159 * 322.57348 * 15 14 13 18 18 N 1.31617 * 120.00049 * 338.07602 * 17 15 14 19 19 Si 1.86799 * 119.99910 * 158.07885 * 17 15 14 20 20 H 1.48506 * 109.47124 * 89.99851 * 19 17 15 21 21 H 1.48497 * 109.47075 * 209.99693 * 19 17 15 22 22 H 1.48501 * 109.47403 * 329.99875 * 19 17 15 23 23 C 1.46496 * 119.99764 * 89.99988 * 14 13 12 24 24 C 1.53005 * 117.49896 * 166.16717 * 23 14 13 25 25 C 1.52999 * 60.00047 * 107.48677 * 24 23 14 26 26 H 1.08993 * 109.47146 * 292.41107 * 1 2 3 27 27 H 1.09004 * 109.47115 * 52.41652 * 1 2 3 28 28 H 1.09004 * 109.47036 * 172.41152 * 1 2 3 29 29 H 1.09001 * 109.47399 * 240.00572 * 2 1 3 30 30 H 1.08999 * 109.47217 * 60.00013 * 3 2 1 31 31 H 1.08998 * 109.47481 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47233 * 299.99824 * 3 2 1 33 33 H 1.09004 * 117.49673 * 145.02710 * 6 4 2 34 34 H 1.08997 * 117.50075 * 0.02562 * 6 4 2 35 35 H 0.96995 * 119.99618 * 359.97438 * 11 9 7 36 36 H 1.08994 * 109.47462 * 59.99632 * 12 11 9 37 37 H 1.09001 * 109.46506 * 299.99555 * 12 11 9 38 38 H 1.09004 * 109.47175 * 59.99628 * 13 12 11 39 39 H 1.08997 * 109.46928 * 299.99987 * 13 12 11 40 40 H 0.96991 * 120.00041 * 175.04947 * 18 17 15 41 41 H 1.09006 * 115.56535 * 20.47328 * 23 14 13 42 42 H 1.09000 * 117.49661 * 214.97759 * 24 23 14 43 43 H 1.08997 * 117.49474 * 359.97438 * 24 23 14 44 44 H 1.08998 * 117.49767 * 252.51116 * 25 24 23 45 45 H 1.09001 * 117.49800 * 107.49215 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 2.1116 -0.1101 2.1489 6 6 3.0910 -1.8158 1.0533 7 6 1.6545 -2.1917 1.4228 8 1 1.4725 -2.5483 2.4366 9 6 0.8020 -2.8189 0.3501 10 8 1.0660 -2.6347 -0.8193 11 7 -0.2538 -3.5845 0.6901 12 6 -1.0823 -4.1947 -0.3527 13 6 -2.2042 -5.0068 0.2972 14 7 -3.0330 -5.6165 -0.7456 15 6 -4.1181 -4.9426 -1.2390 16 1 -4.3630 -5.0084 -2.2889 17 6 -4.9033 -4.1749 -0.3899 18 7 -4.8992 -4.4125 0.9046 19 14 -5.9658 -2.8045 -1.0846 20 1 -7.3054 -3.3440 -1.4310 21 1 -6.1122 -1.7294 -0.0708 22 1 -5.3246 -2.2508 -2.3043 23 6 -2.7009 -6.9472 -1.2605 24 6 -3.7616 -7.6661 -2.0967 25 6 -2.5138 -7.0934 -2.7720 26 1 -0.3633 0.3918 0.9500 27 1 -0.3633 0.6268 -0.8144 28 1 -0.3633 -1.0187 -0.1357 29 1 1.8934 -0.5137 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 3.8539 -1.9248 1.8243 34 1 3.4193 -2.0219 0.0346 35 1 -0.4647 -3.7320 1.6253 36 1 -0.4673 -4.8521 -0.9671 37 1 -1.5142 -3.4127 -0.9774 38 1 -2.8194 -4.3496 0.9119 39 1 -1.7718 -5.7886 0.9216 40 1 -5.3910 -3.8317 1.5059 41 1 -2.0706 -7.5580 -0.6139 42 1 -3.8291 -8.7498 -2.0002 43 1 -4.7065 -7.1491 -2.2633 44 1 -2.6379 -6.1995 -3.3832 45 1 -1.7606 -7.8003 -3.1198 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317558838.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:16 Heat of formation + Delta-G solvation = 4.294450 kcal Electronic energy + Delta-G solvation = -22607.771971 eV Core-core repulsion = 19433.435556 eV Total energy + Delta-G solvation = -3174.336415 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.27509 -38.99095 -38.12854 -36.18159 -34.96977 -34.29986 -32.68126 -29.61846 -28.06646 -26.62568 -25.00339 -23.82209 -22.98726 -22.92437 -21.72223 -21.44464 -20.57951 -18.39036 -17.73148 -17.36784 -16.94916 -16.65184 -16.22539 -15.96916 -15.55344 -15.38497 -14.85407 -14.52412 -14.39528 -14.09724 -13.78011 -13.59314 -13.18963 -13.08481 -13.02767 -13.00968 -12.70073 -12.43244 -12.19461 -12.15975 -12.08521 -12.07844 -11.81363 -11.72055 -11.42206 -11.13947 -10.97613 -10.92404 -10.68697 -10.43697 -9.97460 -8.58419 -7.85145 -5.53721 1.39100 1.43429 1.52211 1.55642 2.21994 2.47447 2.97893 3.10856 3.42459 3.49712 3.64851 3.85502 3.92401 4.06591 4.22012 4.27349 4.34635 4.37641 4.40788 4.45360 4.49160 4.62391 4.67593 4.76009 4.77720 4.87282 4.91881 4.93295 5.01176 5.01690 5.06863 5.19086 5.21716 5.29321 5.31985 5.37427 5.48807 5.53189 5.57973 5.62960 5.70162 6.39374 6.68423 7.09197 7.36807 7.77129 8.27602 9.04376 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016503 B = 0.004781 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.256460 B = 5855.388391 C = 6837.400968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.071 4.071 3 C -0.136 4.136 4 C -0.107 4.107 5 H 0.141 0.859 6 C -0.134 4.134 7 C -0.202 4.202 8 H 0.147 0.853 9 C 0.536 3.464 10 O -0.586 6.586 11 N -0.714 5.714 12 C 0.126 3.874 13 C 0.148 3.852 14 N -0.564 5.564 15 C -0.264 4.264 16 H 0.049 0.951 17 C -0.023 4.023 18 N -0.904 5.904 19 Si 0.943 3.057 20 H -0.281 1.281 21 H -0.285 1.285 22 H -0.282 1.282 23 C 0.101 3.899 24 C -0.190 4.190 25 C -0.210 4.210 26 H 0.063 0.937 27 H 0.046 0.954 28 H 0.030 0.970 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.134 0.866 34 H 0.083 0.917 35 H 0.410 0.590 36 H 0.042 0.958 37 H 0.026 0.974 38 H 0.076 0.924 39 H 0.049 0.951 40 H 0.254 0.746 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.293 5.353 5.023 16.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.090 4.090 3 C -0.193 4.193 4 C -0.125 4.125 5 H 0.158 0.842 6 C -0.171 4.171 7 C -0.223 4.223 8 H 0.165 0.835 9 C 0.325 3.675 10 O -0.467 6.467 11 N -0.365 5.365 12 C 0.000 4.000 13 C 0.021 3.979 14 N -0.281 5.281 15 C -0.394 4.394 16 H 0.067 0.933 17 C -0.222 4.222 18 N -0.547 5.547 19 Si 0.771 3.229 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.207 1.207 23 C -0.007 4.007 24 C -0.229 4.229 25 C -0.250 4.250 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.152 0.848 34 H 0.102 0.898 35 H 0.246 0.754 36 H 0.060 0.940 37 H 0.044 0.956 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.128 0.872 42 H 0.123 0.877 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 14.286 5.507 4.355 15.918 hybrid contribution -1.249 0.441 -0.330 1.365 sum 13.037 5.947 4.025 14.884 Atomic orbital electron populations 1.21873 0.96455 1.00601 1.01536 1.20713 0.94557 0.97037 0.96676 1.21754 1.01480 0.93970 1.02114 1.22542 1.01254 0.88308 1.00433 0.84161 1.23156 0.89923 1.00544 1.03486 1.22404 0.99350 1.01075 0.99426 0.83501 1.20206 0.80380 0.77377 0.89531 1.90647 1.72075 1.62338 1.21619 1.45908 1.29112 1.50701 1.10823 1.21714 0.92103 0.95641 0.90564 1.20913 0.90115 0.96047 0.90827 1.43386 1.27471 1.13071 1.44144 1.18992 1.03379 1.25455 0.91611 0.93289 1.25648 0.97884 1.02805 0.95816 1.70145 1.44328 1.37153 1.03055 0.85684 0.79259 0.80131 0.77806 1.20713 1.21086 1.20731 1.21462 1.00498 0.87865 0.90883 1.23057 0.93922 0.99344 1.06555 1.23311 1.00570 1.02215 0.98913 0.91781 0.93475 0.95091 0.92527 0.91431 0.91463 0.93145 0.84766 0.89822 0.75372 0.93955 0.95578 0.90612 0.93289 0.93631 0.87232 0.87684 0.91046 0.91834 0.87660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.31 8.75 71.98 0.63 -3.68 16 2 C -0.07 -1.76 2.30 -10.80 -0.02 -1.79 16 3 C -0.14 -2.52 9.17 71.98 0.66 -1.86 16 4 C -0.11 -2.11 5.13 -10.79 -0.06 -2.17 16 5 H 0.14 1.97 8.12 -2.39 -0.02 1.95 16 6 C -0.13 -2.55 9.69 30.60 0.30 -2.25 16 7 C -0.20 -4.51 6.10 -11.54 -0.07 -4.58 16 8 H 0.15 2.39 8.14 -2.39 -0.02 2.37 16 9 C 0.54 17.53 5.09 87.65 0.45 17.98 16 10 O -0.59 -23.81 13.68 -3.05 -0.04 -23.86 16 11 N -0.71 -23.66 5.56 -463.07 -2.57 -26.24 16 12 C 0.13 5.22 6.00 86.38 0.52 5.74 16 13 C 0.15 6.52 5.45 86.38 0.47 6.99 16 14 N -0.56 -27.44 2.78 -678.03 -1.89 -29.33 16 15 C -0.26 -14.29 8.06 84.03 0.68 -13.61 16 16 H 0.05 2.74 7.21 -2.91 -0.02 2.72 16 17 C -0.02 -1.25 4.94 84.86 0.42 -0.83 16 18 N -0.90 -50.24 11.49 21.65 0.25 -49.99 16 19 Si 0.94 44.43 29.61 68.60 2.03 46.46 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 21 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 22 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 23 C 0.10 4.21 6.61 44.99 0.30 4.51 16 24 C -0.19 -7.42 9.80 30.60 0.30 -7.12 16 25 C -0.21 -7.92 10.09 30.59 0.31 -7.61 16 26 H 0.06 1.63 8.13 -2.39 -0.02 1.61 16 27 H 0.05 1.37 8.13 -2.39 -0.02 1.35 16 28 H 0.03 1.10 5.09 -2.38 -0.01 1.09 16 29 H 0.06 1.75 6.62 -2.39 -0.02 1.74 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.95 16 33 H 0.13 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.08 1.99 7.78 -2.39 -0.02 1.97 16 35 H 0.41 11.21 8.47 -92.71 -0.79 10.43 16 36 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.08 3.76 5.53 -2.38 -0.01 3.75 16 39 H 0.05 1.96 8.04 -2.39 -0.02 1.94 16 40 H 0.25 13.63 8.32 -92.71 -0.77 12.86 16 41 H 0.11 4.05 8.10 -2.38 -0.02 4.03 16 42 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 43 H 0.07 3.19 6.93 -2.39 -0.02 3.17 16 44 H 0.06 2.68 8.02 -2.39 -0.02 2.66 16 45 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 Total: -1.00 -65.51 359.41 2.83 -62.68 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: 0.18 Total: 30.55 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 4.87 Total: -10.28 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -4.21 Total: -105.55 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.04 Total: -23.86 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -65.51 2.83 -62.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317558838.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.972 kcal (2) G-P(sol) polarization free energy of solvation -65.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds