Wall clock time and date at job start Tue Mar 31 2020 01:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47119 * 2 1 4 4 C 1.53002 * 109.47119 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47206 * 305.00116 * 4 3 2 6 6 C 1.53005 * 109.46895 * 65.00460 * 4 3 2 7 7 C 1.50703 * 109.47142 * 184.99753 * 4 3 2 8 8 O 1.21283 * 120.00309 * 342.54412 * 7 4 3 9 9 N 1.34781 * 119.99802 * 162.53939 * 7 4 3 10 10 C 1.47161 * 120.70730 * 185.54102 * 9 7 4 11 11 C 1.53882 * 108.03121 * 132.73995 * 10 9 7 12 12 H 1.09011 * 112.09557 * 181.90659 * 11 10 9 13 13 C 1.54548 * 108.36689 * 306.24541 * 11 10 9 14 14 C 1.54827 * 104.74042 * 89.17408 * 13 11 10 15 15 C 1.54542 * 104.74569 * 0.02562 * 14 13 11 16 16 H 1.09002 * 112.68190 * 146.80912 * 15 14 13 17 17 C 1.47156 * 120.70893 * 5.52096 * 9 7 4 18 18 N 1.48301 * 107.20974 * 58.35770 * 11 10 9 19 19 C 1.36935 * 128.07803 * 106.09839 * 18 11 10 20 20 H 1.08006 * 119.99656 * 163.39019 * 19 18 11 21 21 C 1.38810 * 120.00273 * 343.38865 * 19 18 11 22 22 N 1.31618 * 119.99747 * 347.25195 * 21 19 18 23 23 Si 1.86802 * 120.00238 * 167.25034 * 21 19 18 24 24 H 1.48495 * 109.47083 * 180.02562 * 23 21 19 25 25 H 1.48505 * 109.46740 * 299.99927 * 23 21 19 26 26 H 1.48492 * 109.47337 * 59.99819 * 23 21 19 27 27 H 1.09000 * 109.46941 * 59.99857 * 1 2 3 28 28 H 1.08998 * 109.46957 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46755 * 299.99625 * 1 2 3 30 30 H 1.09003 * 109.47027 * 240.00151 * 2 1 3 31 31 H 1.08999 * 109.47683 * 120.00194 * 2 1 3 32 32 H 1.09003 * 109.47568 * 60.00245 * 3 2 1 33 33 H 1.09000 * 109.47331 * 299.99905 * 3 2 1 34 34 H 1.09001 * 109.47108 * 173.42753 * 6 4 3 35 35 H 1.09004 * 109.46824 * 293.41618 * 6 4 3 36 36 H 1.08993 * 109.47456 * 53.42211 * 6 4 3 37 37 H 1.09001 * 109.75164 * 13.10171 * 10 9 7 38 38 H 1.09004 * 109.79089 * 252.39382 * 10 9 7 39 39 H 1.08998 * 110.36458 * 208.14309 * 13 11 10 40 40 H 1.08994 * 110.36737 * 330.45616 * 13 11 10 41 41 H 1.08997 * 110.31142 * 241.24448 * 14 13 11 42 42 H 1.09005 * 110.61192 * 118.90894 * 14 13 11 43 43 H 1.08998 * 109.75369 * 346.89428 * 17 9 7 44 44 H 1.08997 * 109.75385 * 107.58210 * 17 9 7 45 45 H 0.96996 * 119.99757 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8529 0.8409 6 6 4.0794 0.8331 -1.3084 7 6 4.0724 2.8579 0.1231 8 8 3.3298 3.7877 -0.1114 9 7 5.3470 3.0905 0.4945 10 6 5.8204 4.4625 0.7379 11 6 6.5907 4.4713 2.0700 12 1 6.9445 5.4685 2.3325 13 6 5.6796 3.8689 3.1634 14 6 5.9704 2.3487 3.1251 15 6 7.0297 2.1788 2.0127 16 1 7.7303 1.3698 2.2194 17 6 6.2948 1.9779 0.6658 18 7 7.7024 3.4984 1.9405 19 6 9.0379 3.7579 1.7849 20 1 9.7642 2.9800 1.9695 21 6 9.4583 5.0205 1.3901 22 7 8.5856 5.8891 0.9251 23 14 11.2626 5.4868 1.5187 24 1 11.4494 6.8793 1.0378 25 1 11.6992 5.3899 2.9348 26 1 12.0734 4.5622 0.6864 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 5.1631 0.9388 -1.3606 35 1 3.8154 -0.2239 -1.3438 36 1 3.6229 1.3502 -2.1523 37 1 4.9690 5.1403 0.8001 38 1 6.4807 4.7741 -0.0715 39 1 5.9341 4.2822 4.1394 40 1 4.6318 4.0596 2.9315 41 1 5.0648 1.7964 2.8744 42 1 6.3679 2.0098 4.0818 43 1 5.7536 1.0319 0.6810 44 1 7.0142 1.9774 -0.1531 45 1 8.8794 6.7712 0.6488 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317733069.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:33 Heat of formation + Delta-G solvation = -20.833989 kcal Electronic energy + Delta-G solvation = -23778.532662 eV Core-core repulsion = 20603.106596 eV Total energy + Delta-G solvation = -3175.426066 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.13067 -38.05957 -35.76354 -33.76851 -32.41368 -31.89259 -30.37510 -29.25316 -26.62993 -26.30548 -24.23744 -23.83303 -22.88263 -20.88894 -19.72473 -19.31049 -18.36097 -17.06831 -16.07853 -15.57122 -15.30858 -14.97243 -14.65068 -14.04764 -13.89078 -13.65691 -13.29133 -13.00579 -12.94679 -12.76700 -12.36793 -12.07941 -11.95365 -11.79499 -11.64279 -11.55003 -11.24612 -11.02870 -10.94533 -10.86313 -10.79521 -10.66715 -10.49987 -10.34324 -10.02824 -9.89032 -9.67225 -9.56475 -9.07330 -8.71923 -7.99019 -6.82198 -5.86329 -3.20389 3.19460 3.35326 3.41226 3.41860 3.67645 4.41022 4.76601 4.81705 4.94140 5.12183 5.18902 5.23848 5.30731 5.34344 5.56373 5.59409 5.65191 5.68076 5.75048 5.76763 5.82931 5.85533 5.87450 5.94700 5.96047 6.08988 6.12354 6.23096 6.33635 6.36766 6.39764 6.44446 6.52066 6.65911 6.71449 6.80790 6.87848 7.04291 7.32659 7.49506 7.69111 8.12147 8.18116 8.79912 9.03822 9.66851 10.44610 11.27440 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.032743 B = 0.004570 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.935571 B = 6125.841044 C = 6176.766180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.099 4.099 4 C -0.111 4.111 5 H 0.090 0.910 6 C -0.143 4.143 7 C 0.509 3.491 8 O -0.561 6.561 9 N -0.591 5.591 10 C 0.112 3.888 11 C 0.170 3.830 12 H 0.109 0.891 13 C -0.135 4.135 14 C -0.121 4.121 15 C 0.132 3.868 16 H 0.077 0.923 17 C 0.093 3.907 18 N -0.584 5.584 19 C -0.232 4.232 20 H 0.075 0.925 21 C 0.000 4.000 22 N -0.909 5.909 23 Si 0.911 3.089 24 H -0.290 1.290 25 H -0.285 1.285 26 H -0.284 1.284 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.980 -11.379 -0.171 15.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.136 4.136 4 C -0.132 4.132 5 H 0.108 0.892 6 C -0.201 4.201 7 C 0.297 3.703 8 O -0.441 6.441 9 N -0.322 5.322 10 C -0.011 4.011 11 C 0.063 3.937 12 H 0.127 0.873 13 C -0.174 4.174 14 C -0.160 4.160 15 C 0.023 3.977 16 H 0.095 0.905 17 C -0.032 4.032 18 N -0.305 5.305 19 C -0.360 4.360 20 H 0.093 0.907 21 C -0.198 4.198 22 N -0.554 5.554 23 Si 0.741 3.259 24 H -0.216 1.216 25 H -0.212 1.212 26 H -0.211 1.211 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.133 -10.663 -0.365 14.715 hybrid contribution 1.032 0.257 -0.036 1.064 sum -9.101 -10.406 -0.401 13.830 Atomic orbital electron populations 1.21760 0.96008 1.01217 1.01910 1.21590 0.95752 0.96978 1.01939 1.21418 0.92784 0.96202 1.03243 1.21308 0.97175 0.94581 1.00123 0.89224 1.21816 1.01663 1.00603 0.95999 1.20516 0.81833 0.90897 0.77084 1.90625 1.56210 1.45794 1.51447 1.48205 1.09343 1.09074 1.65604 1.22409 0.97586 0.80166 1.00951 1.21757 0.85866 0.96242 0.89882 0.87313 1.22697 0.99130 0.95593 1.00008 1.22529 0.97962 0.96797 0.98722 1.22144 0.92675 0.91186 0.91648 0.90457 1.22735 0.92008 0.88004 1.00491 1.45167 1.02446 0.98948 1.83938 1.18920 0.80380 0.97071 1.39589 0.90715 1.24851 0.97745 0.97697 0.99518 1.69878 1.32898 1.06880 1.45781 0.86237 0.84469 0.77422 0.77801 1.21623 1.21168 1.21091 0.92767 0.93011 0.92782 0.91841 0.92136 0.91709 0.91213 0.91920 0.91720 0.92223 0.91650 0.89963 0.92789 0.92920 0.93036 0.92601 0.91494 0.91690 0.93421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.13 -1.21 5.69 -26.73 -0.15 -1.36 16 3 C -0.10 -1.24 4.03 -26.73 -0.11 -1.35 16 4 C -0.11 -1.50 1.87 -91.77 -0.17 -1.67 16 5 H 0.09 1.11 6.86 -51.93 -0.36 0.75 16 6 C -0.14 -1.70 8.45 37.16 0.31 -1.39 16 7 C 0.51 9.34 6.89 -10.98 -0.08 9.27 16 8 O -0.56 -12.21 15.61 5.55 0.09 -12.12 16 9 N -0.59 -11.37 2.28 -171.00 -0.39 -11.76 16 10 C 0.11 2.51 5.78 -3.22 -0.02 2.49 16 11 C 0.17 3.87 3.07 -65.67 -0.20 3.66 16 12 H 0.11 2.81 6.61 -51.92 -0.34 2.46 16 13 C -0.14 -2.61 6.23 -24.96 -0.16 -2.77 16 14 C -0.12 -2.08 6.24 -24.96 -0.16 -2.24 16 15 C 0.13 2.50 4.32 -65.22 -0.28 2.22 16 16 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 17 C 0.09 1.61 4.79 -2.76 -0.01 1.60 16 18 N -0.58 -13.74 2.78 -152.11 -0.42 -14.16 16 19 C -0.23 -6.02 10.35 -15.06 -0.16 -6.17 16 20 H 0.08 1.89 7.86 -52.48 -0.41 1.47 16 21 C 0.00 -0.01 5.37 -17.43 -0.09 -0.10 16 22 N -0.91 -25.05 10.35 55.49 0.57 -24.47 16 23 Si 0.91 21.15 29.57 -169.99 -5.03 16.12 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.57 6.71 -51.93 -0.35 0.22 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.96 8.07 -51.93 -0.42 0.54 16 34 H 0.06 0.78 6.62 -51.93 -0.34 0.44 16 35 H 0.06 0.61 6.90 -51.93 -0.36 0.25 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 1.50 7.16 -51.93 -0.37 1.12 16 38 H 0.08 2.11 7.53 -51.93 -0.39 1.72 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.05 1.00 7.86 -51.93 -0.41 0.59 16 41 H 0.05 0.80 7.87 -51.93 -0.41 0.39 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.07 0.93 5.21 -51.93 -0.27 0.66 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 339.90 15.07 5.12 5.12 Total: -1.00 -29.04 339.90 -8.75 -37.79 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -7.79 Total: 2.25 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -0.90 Total: 1.23 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: -0.24 Total: -50.39 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.12 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.04 -8.75 -37.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317733069.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.957 kcal (2) G-P(sol) polarization free energy of solvation -29.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds