Wall clock time and date at job start Tue Mar 31 2020 01:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47119 * 2 1 4 4 C 1.53002 * 109.47119 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47206 * 305.00116 * 4 3 2 6 6 C 1.53005 * 109.46895 * 65.00460 * 4 3 2 7 7 C 1.50703 * 109.47142 * 184.99753 * 4 3 2 8 8 O 1.21283 * 120.00309 * 342.54412 * 7 4 3 9 9 N 1.34781 * 119.99802 * 162.53939 * 7 4 3 10 10 C 1.47161 * 120.70730 * 185.54102 * 9 7 4 11 11 C 1.53882 * 108.03121 * 132.73995 * 10 9 7 12 12 H 1.09011 * 112.09557 * 181.90659 * 11 10 9 13 13 C 1.54548 * 108.36689 * 306.24541 * 11 10 9 14 14 C 1.54827 * 104.74042 * 89.17408 * 13 11 10 15 15 C 1.54542 * 104.74569 * 0.02562 * 14 13 11 16 16 H 1.09002 * 112.68190 * 146.80912 * 15 14 13 17 17 C 1.47156 * 120.70893 * 5.52096 * 9 7 4 18 18 N 1.48301 * 107.20974 * 58.35770 * 11 10 9 19 19 C 1.36935 * 128.07803 * 106.09839 * 18 11 10 20 20 H 1.08006 * 119.99656 * 163.39019 * 19 18 11 21 21 C 1.38810 * 120.00273 * 343.38865 * 19 18 11 22 22 N 1.31618 * 119.99747 * 347.25195 * 21 19 18 23 23 Si 1.86802 * 120.00238 * 167.25034 * 21 19 18 24 24 H 1.48495 * 109.47083 * 180.02562 * 23 21 19 25 25 H 1.48505 * 109.46740 * 299.99927 * 23 21 19 26 26 H 1.48492 * 109.47337 * 59.99819 * 23 21 19 27 27 H 1.09000 * 109.46941 * 59.99857 * 1 2 3 28 28 H 1.08998 * 109.46957 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46755 * 299.99625 * 1 2 3 30 30 H 1.09003 * 109.47027 * 240.00151 * 2 1 3 31 31 H 1.08999 * 109.47683 * 120.00194 * 2 1 3 32 32 H 1.09003 * 109.47568 * 60.00245 * 3 2 1 33 33 H 1.09000 * 109.47331 * 299.99905 * 3 2 1 34 34 H 1.09001 * 109.47108 * 173.42753 * 6 4 3 35 35 H 1.09004 * 109.46824 * 293.41618 * 6 4 3 36 36 H 1.08993 * 109.47456 * 53.42211 * 6 4 3 37 37 H 1.09001 * 109.75164 * 13.10171 * 10 9 7 38 38 H 1.09004 * 109.79089 * 252.39382 * 10 9 7 39 39 H 1.08998 * 110.36458 * 208.14309 * 13 11 10 40 40 H 1.08994 * 110.36737 * 330.45616 * 13 11 10 41 41 H 1.08997 * 110.31142 * 241.24448 * 14 13 11 42 42 H 1.09005 * 110.61192 * 118.90894 * 14 13 11 43 43 H 1.08998 * 109.75369 * 346.89428 * 17 9 7 44 44 H 1.08997 * 109.75385 * 107.58210 * 17 9 7 45 45 H 0.96996 * 119.99757 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8529 0.8409 6 6 4.0794 0.8331 -1.3084 7 6 4.0724 2.8579 0.1231 8 8 3.3298 3.7877 -0.1114 9 7 5.3470 3.0905 0.4945 10 6 5.8204 4.4625 0.7379 11 6 6.5907 4.4713 2.0700 12 1 6.9445 5.4685 2.3325 13 6 5.6796 3.8689 3.1634 14 6 5.9704 2.3487 3.1251 15 6 7.0297 2.1788 2.0127 16 1 7.7303 1.3698 2.2194 17 6 6.2948 1.9779 0.6658 18 7 7.7024 3.4984 1.9405 19 6 9.0379 3.7579 1.7849 20 1 9.7642 2.9800 1.9695 21 6 9.4583 5.0205 1.3901 22 7 8.5856 5.8891 0.9251 23 14 11.2626 5.4868 1.5187 24 1 11.4494 6.8793 1.0378 25 1 11.6992 5.3899 2.9348 26 1 12.0734 4.5622 0.6864 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 5.1631 0.9388 -1.3606 35 1 3.8154 -0.2239 -1.3438 36 1 3.6229 1.3502 -2.1523 37 1 4.9690 5.1403 0.8001 38 1 6.4807 4.7741 -0.0715 39 1 5.9341 4.2822 4.1394 40 1 4.6318 4.0596 2.9315 41 1 5.0648 1.7964 2.8744 42 1 6.3679 2.0098 4.0818 43 1 5.7536 1.0319 0.6810 44 1 7.0142 1.9774 -0.1531 45 1 8.8794 6.7712 0.6488 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317733069.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:32 Heat of formation + Delta-G solvation = -36.298071 kcal Electronic energy + Delta-G solvation = -23779.203235 eV Core-core repulsion = 20603.106596 eV Total energy + Delta-G solvation = -3176.096639 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.65696 -39.58273 -36.85164 -35.43847 -34.18461 -32.99287 -31.89276 -31.03003 -27.93070 -27.53061 -25.82457 -25.46360 -24.15686 -21.92559 -21.25767 -20.91185 -19.90547 -18.61156 -17.71693 -17.02986 -16.69030 -16.44479 -16.12463 -15.64345 -15.16995 -14.83153 -14.66554 -14.63295 -14.41537 -14.00018 -13.57226 -13.42057 -13.23892 -13.16603 -13.04597 -12.87830 -12.72341 -12.67710 -12.58998 -12.10082 -12.01494 -11.80287 -11.78389 -11.68818 -11.51343 -11.46233 -11.33596 -11.13723 -10.77094 -10.44500 -9.69078 -8.68138 -7.86622 -5.20753 1.48613 1.50845 1.56801 1.74064 2.17785 2.51731 3.33657 3.48508 3.59521 3.83885 4.01797 4.06827 4.13758 4.25081 4.30033 4.32591 4.37018 4.40704 4.46895 4.60056 4.71992 4.72366 4.83518 4.88916 4.93884 4.95280 4.98673 5.06016 5.07523 5.11869 5.15234 5.18972 5.26370 5.27704 5.36505 5.42149 5.48076 5.53562 5.55757 5.59164 5.84346 6.21775 6.68290 7.04928 7.30113 7.73376 8.53187 9.25889 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.032743 B = 0.004570 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.935571 B = 6125.841044 C = 6176.766180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.095 4.095 4 C -0.101 4.101 5 H 0.117 0.883 6 C -0.141 4.141 7 C 0.503 3.497 8 O -0.602 6.602 9 N -0.593 5.593 10 C 0.128 3.872 11 C 0.168 3.832 12 H 0.067 0.933 13 C -0.127 4.127 14 C -0.109 4.109 15 C 0.125 3.875 16 H 0.097 0.903 17 C 0.099 3.901 18 N -0.605 5.605 19 C -0.235 4.235 20 H 0.083 0.917 21 C -0.056 4.056 22 N -0.937 5.937 23 Si 0.970 3.030 24 H -0.301 1.301 25 H -0.281 1.281 26 H -0.277 1.277 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.101 0.899 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.039 0.961 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.115 0.885 44 H 0.047 0.953 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.538 -15.190 0.586 18.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.133 4.133 4 C -0.122 4.122 5 H 0.134 0.866 6 C -0.198 4.198 7 C 0.294 3.706 8 O -0.484 6.484 9 N -0.324 5.324 10 C 0.003 3.997 11 C 0.061 3.939 12 H 0.085 0.915 13 C -0.166 4.166 14 C -0.148 4.148 15 C 0.018 3.982 16 H 0.115 0.885 17 C -0.025 4.025 18 N -0.326 5.326 19 C -0.363 4.363 20 H 0.100 0.900 21 C -0.250 4.250 22 N -0.584 5.584 23 Si 0.800 3.200 24 H -0.228 1.228 25 H -0.207 1.207 26 H -0.203 1.203 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.119 0.881 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.133 0.867 44 H 0.065 0.935 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -10.698 -14.535 0.402 18.052 hybrid contribution 1.155 1.451 -0.295 1.878 sum -9.543 -13.084 0.106 16.195 Atomic orbital electron populations 1.21775 0.95663 1.02153 1.01494 1.21559 0.96057 0.94627 1.03282 1.21395 0.92039 0.98222 1.01674 1.21383 0.97719 0.90959 1.02113 0.86552 1.21842 1.01099 1.02488 0.94372 1.21531 0.80837 0.92828 0.75439 1.90609 1.57135 1.47765 1.52865 1.48236 1.10287 1.08029 1.65861 1.21884 0.96007 0.82279 0.99533 1.21573 0.86555 0.94793 0.91011 0.91483 1.22575 0.98080 0.97454 0.98517 1.22480 0.98537 0.94853 0.98899 1.22461 0.93308 0.89448 0.92943 0.88542 1.22773 0.91772 0.89055 0.98941 1.45362 1.02002 1.01169 1.84111 1.19275 0.81955 0.97087 1.38020 0.89977 1.25571 1.01089 0.98076 1.00290 1.70081 1.34264 1.06670 1.47418 0.85283 0.80619 0.76397 0.77741 1.22812 1.20708 1.20288 0.93293 0.91361 0.93243 0.90492 0.90647 0.93205 0.93094 0.92448 0.88075 0.93377 0.93256 0.94277 0.92583 0.92888 0.90273 0.90904 0.86693 0.93456 0.94526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.91 71.98 0.71 -1.56 16 2 C -0.12 -1.81 5.69 30.59 0.17 -1.64 16 3 C -0.10 -2.18 4.03 30.59 0.12 -2.05 16 4 C -0.10 -2.41 1.87 -11.54 -0.02 -2.43 16 5 H 0.12 2.21 6.86 -2.39 -0.02 2.19 16 6 C -0.14 -2.84 8.45 71.98 0.61 -2.24 16 7 C 0.50 18.02 6.89 87.66 0.60 18.62 16 8 O -0.60 -26.65 15.61 -3.04 -0.05 -26.69 16 9 N -0.59 -22.51 2.28 -813.31 -1.86 -24.37 16 10 C 0.13 6.00 5.78 86.55 0.50 6.50 16 11 C 0.17 7.89 3.07 45.47 0.14 8.03 16 12 H 0.07 3.68 6.61 -2.38 -0.02 3.67 16 13 C -0.13 -4.80 6.23 31.74 0.20 -4.60 16 14 C -0.11 -3.36 6.24 31.74 0.20 -3.16 16 15 C 0.13 4.41 4.32 45.77 0.20 4.61 16 16 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 17 C 0.10 3.18 4.79 86.85 0.42 3.59 16 18 N -0.60 -28.41 2.78 -635.16 -1.77 -30.18 16 19 C -0.23 -12.23 10.35 84.03 0.87 -11.37 16 20 H 0.08 4.07 7.86 -2.91 -0.02 4.05 16 21 C -0.06 -3.03 5.37 84.86 0.46 -2.57 16 22 N -0.94 -54.30 10.35 21.65 0.22 -54.08 16 23 Si 0.97 44.37 29.57 68.60 2.03 46.40 16 24 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 25 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 26 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 1.00 6.71 -2.39 -0.02 0.99 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.05 1.35 8.07 -2.39 -0.02 1.33 16 34 H 0.06 1.24 6.62 -2.39 -0.02 1.23 16 35 H 0.10 1.36 6.90 -2.38 -0.02 1.34 16 36 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.05 2.41 7.16 -2.39 -0.02 2.39 16 38 H 0.04 2.15 7.53 -2.38 -0.02 2.13 16 39 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.05 1.98 7.86 -2.39 -0.02 1.96 16 41 H 0.08 2.04 7.87 -2.39 -0.02 2.02 16 42 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 43 H 0.12 2.61 5.21 -2.39 -0.01 2.60 16 44 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -67.01 339.90 4.70 -62.31 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.95 Total: 16.87 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: 5.18 Total: 9.74 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -3.40 Total: -108.62 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.05 Total: -26.69 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -67.01 4.70 -62.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317733069.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.010 kcal (2) G-P(sol) polarization free energy of solvation -67.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds