Wall clock time and date at job start Tue Mar 31 2020 01:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47397 * 2 1 4 4 C 1.53009 * 109.46690 * 119.99361 * 2 1 3 5 5 H 1.08997 * 109.46604 * 184.99789 * 4 2 1 6 6 C 1.52999 * 109.46984 * 305.00164 * 4 2 1 7 7 N 1.46506 * 109.46684 * 175.00142 * 6 4 2 8 8 C 1.34777 * 119.99873 * 180.02562 * 7 6 4 9 9 O 1.21284 * 119.99754 * 359.97438 * 8 7 6 10 10 C 1.50696 * 120.00137 * 179.97438 * 8 7 6 11 11 C 1.52996 * 115.55184 * 179.97438 * 10 8 7 12 12 C 1.53007 * 117.49792 * 34.33297 * 11 10 8 13 13 C 1.53000 * 117.50107 * 325.67189 * 11 10 8 14 14 C 1.53002 * 117.49738 * 34.32456 * 10 8 7 15 15 C 1.53000 * 117.49629 * 325.66918 * 10 8 7 16 16 N 1.46497 * 109.46622 * 65.00033 * 4 2 1 17 17 C 1.36940 * 120.00012 * 85.00488 * 16 4 2 18 18 H 1.07997 * 120.00297 * 359.97438 * 17 16 4 19 19 C 1.38814 * 119.99883 * 179.97438 * 17 16 4 20 20 N 1.31616 * 119.99993 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00132 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.46847 * 90.00151 * 21 19 17 23 23 H 1.48499 * 109.47153 * 210.00057 * 21 19 17 24 24 H 1.48502 * 109.47494 * 330.00561 * 21 19 17 25 25 H 1.09005 * 109.47239 * 300.00859 * 1 2 3 26 26 H 1.09007 * 109.46708 * 60.00244 * 1 2 3 27 27 H 1.08996 * 109.47271 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47127 * 239.99294 * 2 1 3 29 29 H 1.09007 * 109.46527 * 299.99836 * 3 2 1 30 30 H 1.08995 * 109.47123 * 59.99249 * 3 2 1 31 31 H 1.08998 * 109.47491 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47486 * 55.00077 * 6 4 2 33 33 H 1.09001 * 109.47362 * 294.99354 * 6 4 2 34 34 H 0.96995 * 120.00050 * 359.72237 * 7 6 4 35 35 H 1.09002 * 115.54951 * 179.97438 * 11 10 8 36 36 H 1.08998 * 117.49729 * 359.97438 * 12 11 10 37 37 H 1.08995 * 117.49900 * 145.01819 * 12 11 10 38 38 H 1.08994 * 117.49810 * 214.97869 * 13 11 10 39 39 H 1.08997 * 117.49503 * 359.97339 * 13 11 10 40 40 H 1.09000 * 117.49996 * 0.02562 * 14 10 8 41 41 H 1.08999 * 117.49664 * 145.02064 * 14 10 8 42 42 H 1.09008 * 117.49673 * 214.97861 * 15 10 8 43 43 H 1.08999 * 117.49942 * 359.97292 * 15 10 8 44 44 H 0.97001 * 120.00330 * 264.99061 * 16 4 2 45 45 H 0.97001 * 120.00593 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 3.1262 -0.6443 1.2953 6 6 1.4298 -0.0760 2.4954 7 7 1.8225 -0.8394 3.6825 8 6 1.3984 -0.4538 4.9024 9 8 0.6921 0.5254 5.0172 10 6 1.8019 -1.2393 6.1235 11 6 1.2642 -0.7115 7.4550 12 6 -0.1271 -0.0748 7.4525 13 6 1.1169 0.8038 7.6067 14 6 3.1933 -1.8757 6.1262 15 6 1.9496 -2.7546 5.9717 16 7 1.6523 -2.1327 1.1908 17 6 2.4345 -3.0300 0.5138 18 1 3.3369 -2.6971 0.0228 19 6 2.0674 -4.3676 0.4587 20 7 2.8189 -5.2300 -0.1923 21 14 0.5069 -4.9437 1.3085 22 1 -0.6352 -4.8482 0.3641 23 1 0.6722 -6.3536 1.7445 24 1 0.2428 -4.0872 2.4926 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 3.1301 1.4425 0.0005 32 1 0.3433 -0.0733 2.4081 33 1 1.7895 0.9488 2.5871 34 1 2.3841 -1.6248 3.5902 35 1 1.5557 -1.2800 8.3382 36 1 -0.6591 -0.0316 6.5021 37 1 -0.7504 -0.2238 8.3342 38 1 1.3115 1.2325 8.5897 39 1 1.4035 1.4247 6.7580 40 1 3.8170 -1.7258 5.2449 41 1 3.7251 -1.9188 7.0767 42 1 1.6637 -3.3757 6.8207 43 1 1.7546 -3.1833 4.9887 44 1 0.8417 -2.4318 1.6316 45 1 2.5627 -6.1647 -0.2306 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319915501.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:31 Heat of formation + Delta-G solvation = 2.831672 kcal Electronic energy + Delta-G solvation = -23171.971658 eV Core-core repulsion = 19997.571812 eV Total energy + Delta-G solvation = -3174.399846 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.53257 -39.31210 -37.94311 -36.65859 -35.16778 -34.65165 -32.74113 -29.27017 -27.99708 -26.17440 -25.18623 -23.95994 -23.64943 -22.90523 -22.68116 -20.85078 -20.07286 -19.55767 -17.70654 -17.57006 -16.88276 -16.40479 -16.11012 -16.06716 -15.41303 -15.04847 -14.97895 -14.77378 -14.39589 -14.31376 -14.02827 -14.00879 -13.31797 -13.02840 -12.87343 -12.73672 -12.69619 -12.56732 -12.35614 -12.23488 -12.16359 -12.04899 -11.79412 -11.74259 -11.64987 -11.26104 -11.07337 -10.95113 -10.52692 -10.38098 -9.98998 -9.30765 -8.00036 -5.32919 1.36280 1.39230 1.45071 1.45923 2.20436 2.47776 2.67400 3.27680 3.31960 3.45037 3.51950 3.57510 3.81594 3.96120 3.99889 4.17770 4.23520 4.27048 4.36700 4.37465 4.39596 4.45678 4.66883 4.69763 4.85330 4.85754 4.88162 4.88441 4.95467 5.04970 5.06674 5.11697 5.13657 5.14997 5.28359 5.35596 5.45782 5.47249 5.53137 5.63785 5.81933 6.22961 6.55188 7.08695 7.22775 7.83372 8.02577 9.21279 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014195 B = 0.006251 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.030672 B = 4477.940168 C = 5703.373761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C -0.140 4.140 4 C 0.176 3.824 5 H 0.056 0.944 6 C 0.119 3.881 7 N -0.718 5.718 8 C 0.538 3.462 9 O -0.565 6.565 10 C -0.143 4.143 11 C -0.106 4.106 12 C -0.177 4.177 13 C -0.169 4.169 14 C -0.138 4.138 15 C -0.156 4.156 16 N -0.742 5.742 17 C -0.218 4.218 18 H 0.062 0.938 19 C -0.053 4.053 20 N -0.980 5.980 21 Si 0.942 3.058 22 H -0.289 1.289 23 H -0.298 1.298 24 H -0.253 1.253 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.035 0.965 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.407 0.593 35 H 0.135 0.865 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.131 0.869 42 H 0.126 0.874 43 H 0.086 0.914 44 H 0.363 0.637 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.246 10.906 14.125 17.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.130 4.130 3 C -0.198 4.198 4 C 0.067 3.933 5 H 0.074 0.926 6 C -0.006 4.006 7 N -0.369 5.369 8 C 0.327 3.673 9 O -0.446 6.446 10 C -0.146 4.146 11 C -0.124 4.124 12 C -0.214 4.214 13 C -0.205 4.205 14 C -0.175 4.175 15 C -0.193 4.193 16 N -0.385 5.385 17 C -0.349 4.349 18 H 0.080 0.920 19 C -0.245 4.245 20 N -0.631 5.631 21 Si 0.771 3.229 22 H -0.216 1.216 23 H -0.225 1.225 24 H -0.178 1.178 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.243 0.757 35 H 0.152 0.848 36 H 0.096 0.904 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.100 0.900 40 H 0.116 0.884 41 H 0.149 0.851 42 H 0.145 0.855 43 H 0.104 0.896 44 H 0.196 0.804 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.558 11.532 14.062 18.365 hybrid contribution -0.669 -1.266 -0.358 1.476 sum -3.227 10.266 13.704 17.424 Atomic orbital electron populations 1.21774 0.95283 1.00795 1.01761 1.21597 0.96397 0.96465 0.98591 1.21822 1.00958 0.94648 1.02333 1.20631 0.97593 0.82815 0.92231 0.92628 1.21731 0.99833 0.95416 0.83571 1.46058 1.52988 1.31892 1.06007 1.19935 0.79157 0.84186 0.84067 1.90598 1.38898 1.28592 1.86502 1.21016 1.04236 0.96043 0.93316 1.21503 1.00245 0.96034 0.94630 1.22990 0.90973 1.04695 1.02761 1.22986 1.02213 0.92681 1.02655 1.23221 0.88797 1.00120 1.05401 1.23201 1.01836 0.89920 1.04353 1.42736 1.27616 1.04227 1.63942 1.18950 1.03395 0.88592 1.23953 0.92014 1.25280 1.01204 0.96272 1.01715 1.69851 1.41286 1.03015 1.48969 0.85621 0.80607 0.77369 0.79353 1.21627 1.22478 1.17773 0.92061 0.92111 0.94544 0.93027 0.91885 0.91885 0.92654 0.91830 0.90024 0.75677 0.84755 0.90374 0.87759 0.87531 0.89973 0.88380 0.85064 0.85539 0.89566 0.80426 0.93514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 8.60 71.98 0.62 -3.52 16 2 C -0.11 -3.43 2.88 -10.79 -0.03 -3.46 16 3 C -0.14 -3.44 8.95 71.98 0.64 -2.79 16 4 C 0.18 6.02 2.22 44.99 0.10 6.12 16 5 H 0.06 1.99 8.08 -2.39 -0.02 1.97 16 6 C 0.12 3.63 4.53 86.38 0.39 4.02 16 7 N -0.72 -21.97 5.19 -463.05 -2.40 -24.37 16 8 C 0.54 16.51 7.24 87.66 0.63 17.15 16 9 O -0.57 -19.81 11.83 -3.04 -0.04 -19.85 16 10 C -0.14 -3.49 2.46 -52.93 -0.13 -3.62 16 11 C -0.11 -2.29 5.84 -10.79 -0.06 -2.36 16 12 C -0.18 -4.28 9.66 30.62 0.30 -3.98 16 13 C -0.17 -3.91 9.66 30.62 0.30 -3.61 16 14 C -0.14 -2.75 9.60 30.62 0.29 -2.46 16 15 C -0.16 -3.46 9.60 30.62 0.29 -3.16 16 16 N -0.74 -31.29 3.81 -322.94 -1.23 -32.52 16 17 C -0.22 -11.43 10.41 84.03 0.87 -10.55 16 18 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 19 C -0.05 -2.95 5.50 84.86 0.47 -2.48 16 20 N -0.98 -60.35 13.97 21.65 0.30 -60.05 16 21 Si 0.94 43.95 27.73 68.60 1.90 45.86 16 22 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 23 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 24 H -0.25 -10.63 6.52 99.48 0.65 -9.98 16 25 H 0.06 1.67 6.23 -2.38 -0.01 1.65 16 26 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 27 H 0.04 1.24 7.75 -2.39 -0.02 1.22 16 28 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.06 1.42 6.68 -2.39 -0.02 1.40 16 31 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.06 2.04 6.06 -2.39 -0.01 2.02 16 33 H 0.08 2.32 6.81 -2.39 -0.02 2.30 16 34 H 0.41 12.64 6.32 -92.71 -0.59 12.06 16 35 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.08 2.38 6.28 -2.39 -0.01 2.36 16 37 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.08 2.36 6.28 -2.39 -0.02 2.34 16 40 H 0.10 2.07 7.55 -2.39 -0.02 2.05 16 41 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.13 2.24 8.14 -2.38 -0.02 2.22 16 43 H 0.09 2.28 7.54 -2.39 -0.02 2.26 16 44 H 0.36 15.33 5.66 -92.71 -0.52 14.80 16 45 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -64.33 351.33 3.04 -61.30 By element: Atomic # 1 Polarization: 44.53 SS G_CDS: -0.18 Total: 44.35 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: 4.69 Total: -14.71 kcal Atomic # 7 Polarization: -113.61 SS G_CDS: -3.33 Total: -116.94 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.04 Total: -19.85 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.90 Total: 45.86 kcal Total: -64.33 3.04 -61.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319915501.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.127 kcal (2) G-P(sol) polarization free energy of solvation -64.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds