Wall clock time and date at job start Tue Mar 31 2020 01:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47372 * 2 1 4 4 C 1.52997 * 109.47085 * 120.00241 * 2 1 3 5 5 H 1.09002 * 109.47016 * 184.99997 * 4 2 1 6 6 C 1.52997 * 109.47504 * 64.99737 * 4 2 1 7 7 N 1.46505 * 109.47212 * 184.99959 * 6 4 2 8 8 C 1.34771 * 119.99622 * 179.97438 * 7 6 4 9 9 O 1.21280 * 120.00597 * 0.02562 * 8 7 6 10 10 C 1.50701 * 119.99622 * 179.97438 * 8 7 6 11 11 C 1.53008 * 115.55055 * 179.91471 * 10 8 7 12 12 C 1.52996 * 117.49737 * 34.33139 * 11 10 8 13 13 C 1.52994 * 117.49693 * 325.67203 * 11 10 8 14 14 C 1.53005 * 117.49883 * 34.20854 * 10 8 7 15 15 C 1.53004 * 117.50093 * 325.58498 * 10 8 7 16 16 N 1.46503 * 109.46834 * 304.99499 * 4 2 1 17 17 C 1.36938 * 120.00424 * 275.00132 * 16 4 2 18 18 H 1.08006 * 119.99738 * 0.02562 * 17 16 4 19 19 C 1.38810 * 120.00380 * 179.97438 * 17 16 4 20 20 N 1.31611 * 119.99994 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 119.99860 * 0.02562 * 19 17 16 22 22 H 1.48492 * 109.47242 * 89.99648 * 21 19 17 23 23 H 1.48493 * 109.46816 * 210.00042 * 21 19 17 24 24 H 1.48504 * 109.47064 * 329.99740 * 21 19 17 25 25 H 1.08999 * 109.46571 * 300.00226 * 1 2 3 26 26 H 1.09001 * 109.46985 * 59.99660 * 1 2 3 27 27 H 1.08995 * 109.47246 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47091 * 239.99766 * 2 1 3 29 29 H 1.08997 * 109.47204 * 59.99836 * 3 2 1 30 30 H 1.08997 * 109.47085 * 180.02562 * 3 2 1 31 31 H 1.09009 * 109.46774 * 299.99868 * 3 2 1 32 32 H 1.09002 * 109.47153 * 64.99951 * 6 4 2 33 33 H 1.09001 * 109.46832 * 305.00142 * 6 4 2 34 34 H 0.96996 * 119.99606 * 0.02562 * 7 6 4 35 35 H 1.08996 * 115.54795 * 180.02562 * 11 10 8 36 36 H 1.09000 * 117.49879 * 0.02562 * 12 11 10 37 37 H 1.08998 * 117.50153 * 145.01755 * 12 11 10 38 38 H 1.08996 * 117.49806 * 214.97774 * 13 11 10 39 39 H 1.08998 * 117.50113 * 359.97438 * 13 11 10 40 40 H 1.08996 * 117.49424 * 0.02562 * 14 10 8 41 41 H 1.08998 * 117.49609 * 145.01539 * 14 10 8 42 42 H 1.08995 * 117.49874 * 214.97824 * 15 10 8 43 43 H 1.08997 * 117.49387 * 359.97438 * 15 10 8 44 44 H 0.97007 * 119.99919 * 95.00541 * 16 4 2 45 45 H 0.97003 * 119.99847 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1264 -0.6444 1.2951 6 6 1.6353 -2.1955 1.1880 7 7 2.0184 -2.8594 2.4365 8 6 1.7587 -4.1704 2.6097 9 8 1.2083 -4.8008 1.7319 10 6 2.1534 -4.8535 3.8937 11 6 1.8085 -6.3416 3.9826 12 6 1.8839 -7.1624 2.6937 13 6 0.5227 -6.8108 3.2991 14 6 2.0789 -4.0323 5.1826 15 6 3.4393 -4.3843 4.5773 16 7 1.4559 -0.1036 2.4423 17 6 2.0442 1.0003 2.9997 18 1 2.9386 1.4158 2.5594 19 6 1.4905 1.5858 4.1299 20 7 2.0562 2.6464 4.6658 21 14 -0.0569 0.8676 4.8910 22 1 0.3169 -0.1503 5.9054 23 1 -0.8375 1.9508 5.5409 24 1 -0.8803 0.2313 3.8315 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.6768 1.9563 0.8899 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8901 32 1 2.1408 -2.6766 0.3506 33 1 0.5563 -2.2706 1.0527 34 1 2.4583 -2.3551 3.1386 35 1 2.0936 -6.8354 4.9115 36 1 2.1796 -6.6425 1.7825 37 1 2.2186 -8.1966 2.7745 38 1 -0.0376 -7.6137 3.7779 39 1 -0.0778 -6.0594 2.7864 40 1 1.7440 -2.9983 5.1017 41 1 1.7839 -4.5521 6.0941 42 1 4.0394 -5.1356 5.0906 43 1 4.0000 -3.5818 4.0980 44 1 0.6524 -0.4766 2.8376 45 1 1.6694 3.0554 5.4558 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319915503.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:36 Heat of formation + Delta-G solvation = 20.312962 kcal Electronic energy + Delta-G solvation = -23207.753702 eV Core-core repulsion = 20034.111901 eV Total energy + Delta-G solvation = -3173.641800 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.38339 -37.90620 -36.77709 -35.65182 -33.55270 -32.93855 -30.67453 -28.29570 -26.50808 -24.87129 -23.58702 -22.72400 -22.38096 -21.96278 -21.21094 -19.64432 -18.80459 -17.64125 -16.61616 -16.16319 -15.44844 -15.21318 -14.74219 -14.49493 -14.29444 -13.84996 -13.50223 -13.32199 -13.03108 -12.87080 -12.54054 -12.28830 -12.16733 -11.70152 -11.40234 -11.38014 -11.30854 -11.10738 -11.04716 -10.88834 -10.83706 -10.62774 -10.34620 -10.13846 -10.09883 -9.97854 -9.49326 -9.42338 -9.36032 -8.98682 -8.72370 -7.37091 -5.85259 -3.20995 2.60411 3.28769 3.34167 3.38139 3.41828 3.66576 4.22556 4.39829 4.50629 4.56108 4.89913 5.00749 5.13196 5.17775 5.25663 5.29167 5.33478 5.40108 5.57334 5.62195 5.71736 5.73789 5.80062 5.81086 5.84366 5.97693 5.99366 6.02664 6.04219 6.26110 6.28443 6.34754 6.46106 6.50563 6.54512 6.63041 6.69674 6.83590 6.93801 7.29487 7.80521 7.90705 8.32943 8.45932 9.11028 9.83369 10.03039 11.32410 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016211 B = 0.005888 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.849784 B = 4753.969800 C = 5734.661958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 C -0.142 4.142 4 C 0.173 3.827 5 H 0.062 0.938 6 C 0.110 3.890 7 N -0.716 5.716 8 C 0.545 3.455 9 O -0.543 6.543 10 C -0.128 4.128 11 C -0.114 4.114 12 C -0.168 4.168 13 C -0.168 4.168 14 C -0.156 4.156 15 C -0.154 4.154 16 N -0.743 5.743 17 C -0.241 4.241 18 H 0.095 0.905 19 C 0.009 3.991 20 N -0.930 5.930 21 Si 0.876 3.124 22 H -0.284 1.284 23 H -0.292 1.292 24 H -0.277 1.277 25 H 0.065 0.935 26 H 0.041 0.959 27 H 0.043 0.957 28 H 0.052 0.948 29 H 0.089 0.911 30 H 0.042 0.958 31 H 0.033 0.967 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.408 0.592 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.362 0.638 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.662 -14.398 -2.896 14.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.128 4.128 3 C -0.199 4.199 4 C 0.063 3.937 5 H 0.080 0.920 6 C -0.014 4.014 7 N -0.367 5.367 8 C 0.331 3.669 9 O -0.421 6.421 10 C -0.131 4.131 11 C -0.133 4.133 12 C -0.204 4.204 13 C -0.205 4.205 14 C -0.193 4.193 15 C -0.191 4.191 16 N -0.386 5.386 17 C -0.370 4.370 18 H 0.112 0.888 19 C -0.187 4.187 20 N -0.577 5.577 21 Si 0.706 3.294 22 H -0.211 1.211 23 H -0.219 1.219 24 H -0.204 1.204 25 H 0.084 0.916 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.107 0.893 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.245 0.755 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.195 0.805 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.431 -14.615 -3.469 15.027 hybrid contribution -0.989 -0.079 1.003 1.411 sum -0.558 -14.693 -2.467 14.909 Atomic orbital electron populations 1.21787 0.95944 1.00526 1.01640 1.21585 0.95917 0.97529 0.97753 1.21846 0.99864 0.95894 1.02331 1.20530 0.97350 0.88122 0.87700 0.91998 1.21783 1.00551 0.93415 0.85634 1.46010 1.61146 1.09429 1.20145 1.19418 0.78422 0.81837 0.87185 1.90604 1.43015 1.64565 1.43961 1.20985 1.04822 0.94636 0.92650 1.21349 1.03977 0.90716 0.97213 1.23029 1.00872 0.99080 0.97456 1.23033 0.90933 1.03190 1.03370 1.23146 1.00135 1.00880 0.95163 1.23090 0.90157 1.03317 1.02522 1.42806 1.31255 1.34348 1.30204 1.19047 1.08282 1.02751 1.06965 0.88760 1.24629 0.98309 0.97547 0.98209 1.69682 1.41366 1.22743 1.23953 0.86699 0.84705 0.78507 0.79476 1.21088 1.21861 1.20368 0.91591 0.94014 0.93782 0.92920 0.89267 0.93908 0.94830 0.91562 0.91490 0.75510 0.87540 0.87380 0.89851 0.89827 0.87392 0.87586 0.87716 0.87736 0.87821 0.80522 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.74 37.16 0.32 -1.96 16 2 C -0.11 -1.72 2.74 -90.62 -0.25 -1.97 16 3 C -0.14 -2.49 8.46 37.16 0.31 -2.18 16 4 C 0.17 2.97 2.29 -67.93 -0.16 2.81 16 5 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 6 C 0.11 1.74 5.10 -4.04 -0.02 1.71 16 7 N -0.72 -11.05 5.19 -60.29 -0.31 -11.37 16 8 C 0.54 8.53 7.24 -10.99 -0.08 8.45 16 9 O -0.54 -9.60 11.83 5.56 0.07 -9.53 16 10 C -0.13 -1.67 2.47 -155.65 -0.38 -2.06 16 11 C -0.11 -1.39 5.85 -90.62 -0.53 -1.92 16 12 C -0.17 -2.10 9.66 -26.70 -0.26 -2.36 16 13 C -0.17 -2.17 9.66 -26.70 -0.26 -2.43 16 14 C -0.16 -1.90 9.59 -26.72 -0.26 -2.15 16 15 C -0.15 -1.72 9.59 -26.73 -0.26 -1.97 16 16 N -0.74 -15.25 3.33 -53.42 -0.18 -15.43 16 17 C -0.24 -5.97 8.24 -15.06 -0.12 -6.10 16 18 H 0.09 2.54 7.55 -52.48 -0.40 2.14 16 19 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 20 N -0.93 -27.38 13.97 55.49 0.78 -26.60 16 21 Si 0.88 20.80 27.74 -169.99 -4.71 16.09 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 25 H 0.07 1.22 7.47 -51.93 -0.39 0.84 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.04 0.66 6.46 -51.93 -0.34 0.33 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.09 1.88 5.99 -51.93 -0.31 1.57 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.03 0.53 8.14 -51.92 -0.42 0.10 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 1.11 6.34 -51.93 -0.33 0.78 16 34 H 0.41 6.33 6.33 -40.82 -0.26 6.07 16 35 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.11 1.59 6.28 -51.93 -0.33 1.26 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.11 1.65 6.29 -51.93 -0.33 1.33 16 40 H 0.11 1.46 7.54 -51.93 -0.39 1.07 16 41 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.10 1.18 7.55 -51.93 -0.39 0.78 16 44 H 0.36 7.65 5.66 -40.82 -0.23 7.42 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 349.18 15.07 5.26 5.26 Total: -1.00 -28.29 349.18 -8.63 -36.92 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: -7.50 Total: 16.63 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -2.03 Total: -11.97 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 0.28 Total: -53.40 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.07 Total: -9.53 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.71 Total: 16.09 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.29 -8.63 -36.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319915503.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.236 kcal (2) G-P(sol) polarization free energy of solvation -28.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds