Wall clock time and date at job start Tue Mar 31 2020 01:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47372 * 2 1 4 4 C 1.52997 * 109.47085 * 120.00241 * 2 1 3 5 5 H 1.09002 * 109.47016 * 184.99997 * 4 2 1 6 6 C 1.52997 * 109.47504 * 64.99737 * 4 2 1 7 7 N 1.46505 * 109.47212 * 184.99959 * 6 4 2 8 8 C 1.34771 * 119.99622 * 179.97438 * 7 6 4 9 9 O 1.21280 * 120.00597 * 0.02562 * 8 7 6 10 10 C 1.50701 * 119.99622 * 179.97438 * 8 7 6 11 11 C 1.53008 * 115.55055 * 179.91471 * 10 8 7 12 12 C 1.52996 * 117.49737 * 34.33139 * 11 10 8 13 13 C 1.52994 * 117.49693 * 325.67203 * 11 10 8 14 14 C 1.53005 * 117.49883 * 34.20854 * 10 8 7 15 15 C 1.53004 * 117.50093 * 325.58498 * 10 8 7 16 16 N 1.46503 * 109.46834 * 304.99499 * 4 2 1 17 17 C 1.36938 * 120.00424 * 275.00132 * 16 4 2 18 18 H 1.08006 * 119.99738 * 0.02562 * 17 16 4 19 19 C 1.38810 * 120.00380 * 179.97438 * 17 16 4 20 20 N 1.31611 * 119.99994 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 119.99860 * 0.02562 * 19 17 16 22 22 H 1.48492 * 109.47242 * 89.99648 * 21 19 17 23 23 H 1.48493 * 109.46816 * 210.00042 * 21 19 17 24 24 H 1.48504 * 109.47064 * 329.99740 * 21 19 17 25 25 H 1.08999 * 109.46571 * 300.00226 * 1 2 3 26 26 H 1.09001 * 109.46985 * 59.99660 * 1 2 3 27 27 H 1.08995 * 109.47246 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47091 * 239.99766 * 2 1 3 29 29 H 1.08997 * 109.47204 * 59.99836 * 3 2 1 30 30 H 1.08997 * 109.47085 * 180.02562 * 3 2 1 31 31 H 1.09009 * 109.46774 * 299.99868 * 3 2 1 32 32 H 1.09002 * 109.47153 * 64.99951 * 6 4 2 33 33 H 1.09001 * 109.46832 * 305.00142 * 6 4 2 34 34 H 0.96996 * 119.99606 * 0.02562 * 7 6 4 35 35 H 1.08996 * 115.54795 * 180.02562 * 11 10 8 36 36 H 1.09000 * 117.49879 * 0.02562 * 12 11 10 37 37 H 1.08998 * 117.50153 * 145.01755 * 12 11 10 38 38 H 1.08996 * 117.49806 * 214.97774 * 13 11 10 39 39 H 1.08998 * 117.50113 * 359.97438 * 13 11 10 40 40 H 1.08996 * 117.49424 * 0.02562 * 14 10 8 41 41 H 1.08998 * 117.49609 * 145.01539 * 14 10 8 42 42 H 1.08995 * 117.49874 * 214.97824 * 15 10 8 43 43 H 1.08997 * 117.49387 * 359.97438 * 15 10 8 44 44 H 0.97007 * 119.99919 * 95.00541 * 16 4 2 45 45 H 0.97003 * 119.99847 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1264 -0.6444 1.2951 6 6 1.6353 -2.1955 1.1880 7 7 2.0184 -2.8594 2.4365 8 6 1.7587 -4.1704 2.6097 9 8 1.2083 -4.8008 1.7319 10 6 2.1534 -4.8535 3.8937 11 6 1.8085 -6.3416 3.9826 12 6 1.8839 -7.1624 2.6937 13 6 0.5227 -6.8108 3.2991 14 6 2.0789 -4.0323 5.1826 15 6 3.4393 -4.3843 4.5773 16 7 1.4559 -0.1036 2.4423 17 6 2.0442 1.0003 2.9997 18 1 2.9386 1.4158 2.5594 19 6 1.4905 1.5858 4.1299 20 7 2.0562 2.6464 4.6658 21 14 -0.0569 0.8676 4.8910 22 1 0.3169 -0.1503 5.9054 23 1 -0.8375 1.9508 5.5409 24 1 -0.8803 0.2313 3.8315 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.6768 1.9563 0.8899 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8901 32 1 2.1408 -2.6766 0.3506 33 1 0.5563 -2.2706 1.0527 34 1 2.4583 -2.3551 3.1386 35 1 2.0936 -6.8354 4.9115 36 1 2.1796 -6.6425 1.7825 37 1 2.2186 -8.1966 2.7745 38 1 -0.0376 -7.6137 3.7779 39 1 -0.0778 -6.0594 2.7864 40 1 1.7440 -2.9983 5.1017 41 1 1.7839 -4.5521 6.0941 42 1 4.0394 -5.1356 5.0906 43 1 4.0000 -3.5818 4.0980 44 1 0.6524 -0.4766 2.8376 45 1 1.6694 3.0554 5.4558 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319915503.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:35 Heat of formation + Delta-G solvation = 4.235745 kcal Electronic energy + Delta-G solvation = -23208.450862 eV Core-core repulsion = 20034.111901 eV Total energy + Delta-G solvation = -3174.338961 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.52001 -39.28102 -37.97229 -36.68392 -34.91576 -34.66169 -32.49332 -29.76527 -27.89044 -26.07930 -25.12957 -23.84106 -23.64721 -22.90521 -22.40714 -20.90855 -20.32726 -19.39887 -17.74973 -17.34396 -16.92087 -16.36374 -16.08291 -15.92800 -15.70282 -15.20110 -14.87057 -14.60738 -14.54103 -14.27140 -14.09117 -13.52213 -13.31562 -12.97226 -12.92956 -12.80825 -12.60862 -12.46150 -12.35730 -12.22975 -12.08821 -11.99275 -11.85096 -11.74251 -11.42684 -11.27009 -11.07138 -10.90563 -10.51855 -10.38037 -9.99558 -9.26111 -7.94189 -5.25309 1.38396 1.41167 1.45790 1.46939 2.20716 2.51882 2.67560 3.27952 3.37117 3.45064 3.54296 3.60840 3.83965 3.96224 3.99262 4.22353 4.23919 4.27395 4.36711 4.37276 4.40222 4.62259 4.69792 4.70685 4.86152 4.88131 4.92353 4.92911 4.95989 5.05017 5.08859 5.13769 5.18687 5.24498 5.29051 5.36847 5.45614 5.53346 5.56967 5.76947 5.89356 6.28229 6.56242 7.14260 7.23729 7.89029 8.07946 9.26989 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016211 B = 0.005888 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.849784 B = 4753.969800 C = 5734.661958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.103 4.103 3 C -0.137 4.137 4 C 0.174 3.826 5 H 0.059 0.941 6 C 0.120 3.880 7 N -0.717 5.717 8 C 0.539 3.461 9 O -0.566 6.566 10 C -0.143 4.143 11 C -0.106 4.106 12 C -0.169 4.169 13 C -0.177 4.177 14 C -0.156 4.156 15 C -0.138 4.138 16 N -0.739 5.739 17 C -0.200 4.200 18 H 0.069 0.931 19 C -0.055 4.055 20 N -0.982 5.982 21 Si 0.933 3.067 22 H -0.276 1.276 23 H -0.308 1.308 24 H -0.264 1.264 25 H 0.037 0.963 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.041 0.959 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.408 0.592 35 H 0.134 0.866 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.125 0.875 42 H 0.130 0.870 43 H 0.099 0.901 44 H 0.362 0.638 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.650 -16.854 -3.156 17.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.125 4.125 3 C -0.194 4.194 4 C 0.065 3.935 5 H 0.077 0.923 6 C -0.004 4.004 7 N -0.368 5.368 8 C 0.327 3.673 9 O -0.446 6.446 10 C -0.146 4.146 11 C -0.124 4.124 12 C -0.205 4.205 13 C -0.214 4.214 14 C -0.193 4.193 15 C -0.175 4.175 16 N -0.383 5.383 17 C -0.331 4.331 18 H 0.087 0.913 19 C -0.246 4.246 20 N -0.633 5.633 21 Si 0.763 3.237 22 H -0.202 1.202 23 H -0.235 1.235 24 H -0.189 1.189 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.101 0.899 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.244 0.756 35 H 0.152 0.848 36 H 0.100 0.900 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.143 0.857 42 H 0.149 0.851 43 H 0.117 0.883 44 H 0.195 0.805 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.416 -17.117 -3.774 17.533 hybrid contribution -0.926 0.680 0.933 1.480 sum -0.509 -16.438 -2.841 16.689 Atomic orbital electron populations 1.21736 0.95588 1.01075 1.01073 1.21554 0.96148 0.96621 0.98136 1.21748 0.99803 0.96642 1.01221 1.20661 0.96951 0.89061 0.86801 0.92334 1.21649 1.00280 0.92128 0.86391 1.46028 1.61188 1.09626 1.19991 1.19922 0.77830 0.81617 0.87961 1.90601 1.44015 1.64966 1.45066 1.21016 1.06705 0.95214 0.91642 1.21502 1.02890 0.90056 0.97974 1.22985 1.00650 1.00141 0.96760 1.22983 0.91150 1.03298 1.03988 1.23183 1.00926 0.99852 0.95367 1.23211 0.89630 1.03396 1.01270 1.42745 1.31051 1.33237 1.31225 1.18940 1.06426 1.02393 1.05373 0.91292 1.25199 1.01425 0.98447 0.99574 1.69839 1.43456 1.25070 1.24958 0.85743 0.81538 0.77430 0.78990 1.20190 1.23535 1.18923 0.94419 0.92328 0.92666 0.89925 0.93344 0.93937 0.92891 0.90277 0.92048 0.75565 0.84807 0.89956 0.87557 0.87789 0.90368 0.89523 0.85668 0.85140 0.88281 0.80531 0.93783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.16 8.74 71.98 0.63 -3.53 16 2 C -0.10 -3.15 2.74 -10.79 -0.03 -3.18 16 3 C -0.14 -4.67 8.46 71.98 0.61 -4.06 16 4 C 0.17 5.74 2.29 44.99 0.10 5.85 16 5 H 0.06 2.01 8.08 -2.39 -0.02 1.99 16 6 C 0.12 3.58 5.10 86.38 0.44 4.02 16 7 N -0.72 -21.38 5.19 -463.06 -2.40 -23.78 16 8 C 0.54 16.31 7.24 87.66 0.63 16.94 16 9 O -0.57 -19.74 11.83 -3.03 -0.04 -19.78 16 10 C -0.14 -3.45 2.47 -52.92 -0.13 -3.58 16 11 C -0.11 -2.29 5.85 -10.79 -0.06 -2.35 16 12 C -0.17 -3.91 9.66 30.62 0.30 -3.61 16 13 C -0.18 -4.28 9.66 30.62 0.30 -3.98 16 14 C -0.16 -3.44 9.59 30.60 0.29 -3.15 16 15 C -0.14 -2.72 9.59 30.60 0.29 -2.42 16 16 N -0.74 -30.01 3.33 -322.94 -1.08 -31.09 16 17 C -0.20 -10.07 8.24 84.03 0.69 -9.38 16 18 H 0.07 3.81 7.55 -2.91 -0.02 3.79 16 19 C -0.06 -3.01 5.50 84.86 0.47 -2.55 16 20 N -0.98 -59.66 13.97 21.65 0.30 -59.36 16 21 Si 0.93 43.52 27.74 68.60 1.90 45.43 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.31 -15.10 7.11 99.48 0.71 -14.39 16 24 H -0.26 -11.51 6.52 99.48 0.65 -10.87 16 25 H 0.04 1.35 7.47 -2.39 -0.02 1.33 16 26 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.05 1.54 6.46 -2.39 -0.02 1.53 16 28 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.05 2.05 5.99 -2.39 -0.01 2.04 16 30 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.06 1.93 6.34 -2.39 -0.02 1.92 16 34 H 0.41 12.27 6.33 -92.71 -0.59 11.68 16 35 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.08 2.36 6.28 -2.39 -0.01 2.35 16 37 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.08 2.38 6.29 -2.39 -0.02 2.36 16 40 H 0.09 2.27 7.54 -2.39 -0.02 2.25 16 41 H 0.13 2.23 8.14 -2.39 -0.02 2.22 16 42 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.10 2.05 7.55 -2.39 -0.02 2.03 16 44 H 0.36 14.95 5.66 -92.70 -0.52 14.42 16 45 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -62.67 349.18 3.04 -59.63 By element: Atomic # 1 Polarization: 44.13 SS G_CDS: -0.18 Total: 43.95 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: 4.53 Total: -15.00 kcal Atomic # 7 Polarization: -111.05 SS G_CDS: -3.18 Total: -114.23 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.04 Total: -19.78 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.90 Total: 45.43 kcal Total: -62.67 3.04 -59.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319915503.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.864 kcal (2) G-P(sol) polarization free energy of solvation -62.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds