Wall clock time and date at job start Tue Mar 31 2020 02:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.50697 * 119.99954 * 2 1 4 4 C 1.32990 * 120.00026 * 179.97438 * 2 1 3 5 5 C 1.47101 * 119.99837 * 352.90591 * 4 2 1 6 6 O 1.21608 * 120.00146 * 353.36169 * 5 4 2 7 7 N 1.34779 * 119.99851 * 173.63215 * 5 4 2 8 8 C 1.46497 * 119.99980 * 179.72415 * 7 5 4 9 9 C 1.53006 * 109.47042 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.45966 * 60.02855 * 9 8 7 11 11 C 1.53035 * 109.46057 * 300.06748 * 9 8 7 12 12 C 1.53188 * 109.31400 * 178.61152 * 11 9 8 13 13 N 1.46925 * 108.77283 * 54.63979 * 12 11 9 14 14 C 1.36941 * 120.63104 * 126.41477 * 13 12 11 15 15 H 1.08006 * 119.99556 * 207.31036 * 14 13 12 16 16 C 1.38808 * 120.00096 * 27.31091 * 14 13 12 17 17 N 1.31613 * 120.00119 * 16.61100 * 16 14 13 18 18 Si 1.86797 * 119.99780 * 196.60846 * 16 14 13 19 19 H 1.48501 * 109.47575 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47153 * 120.00145 * 18 16 14 21 21 H 1.48500 * 109.47082 * 240.00175 * 18 16 14 22 22 C 1.46922 * 118.73936 * 306.38657 * 13 12 11 23 23 C 1.53040 * 109.45832 * 179.97438 * 9 8 7 24 24 H 1.08997 * 109.47167 * 264.31782 * 1 2 3 25 25 H 1.08998 * 109.46788 * 24.31170 * 1 2 3 26 26 H 1.08996 * 109.46992 * 144.31357 * 1 2 3 27 27 H 1.08995 * 109.47453 * 240.00115 * 3 2 1 28 28 H 1.09000 * 109.47148 * 359.97438 * 3 2 1 29 29 H 1.08998 * 109.47455 * 119.99296 * 3 2 1 30 30 H 1.07994 * 119.99716 * 172.90471 * 4 2 1 31 31 H 0.97004 * 119.99817 * 359.73620 * 7 5 4 32 32 H 1.09004 * 109.47411 * 299.99791 * 8 7 5 33 33 H 1.08997 * 109.47045 * 60.00553 * 8 7 5 34 34 H 1.08996 * 109.47635 * 59.99831 * 10 9 8 35 35 H 1.08999 * 109.47272 * 180.02562 * 10 9 8 36 36 H 1.09003 * 109.47343 * 300.00311 * 10 9 8 37 37 H 1.08994 * 109.49825 * 298.56799 * 11 9 8 38 38 H 1.09003 * 109.49615 * 58.66119 * 11 9 8 39 39 H 1.08998 * 109.59056 * 294.84852 * 12 11 9 40 40 H 1.09004 * 109.58921 * 174.42159 * 12 11 9 41 41 H 0.97000 * 120.00021 * 180.02562 * 17 16 14 42 42 H 1.08997 * 109.59039 * 293.82879 * 22 13 12 43 43 H 1.09001 * 109.71113 * 173.46512 * 22 13 12 44 44 H 1.09000 * 109.49876 * 301.33517 * 23 9 8 45 45 H 1.08998 * 109.49969 * 61.43763 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 2.1720 -1.1517 0.0005 5 6 1.4450 -2.4207 0.1584 6 8 0.2550 -2.4126 0.4089 7 7 2.0988 -3.5923 0.0309 8 6 1.3760 -4.8561 0.1941 9 6 2.3435 -6.0256 0.0012 10 6 3.4611 -5.9397 1.0426 11 6 2.9490 -5.9601 -1.4027 12 6 3.9429 -7.1122 -1.5801 13 7 3.2598 -8.3770 -1.2760 14 6 3.2696 -9.4092 -2.1758 15 1 2.4609 -10.1251 -2.1852 16 6 4.3187 -9.5354 -3.0759 17 7 5.4452 -8.8870 -2.8687 18 14 4.1318 -10.6255 -4.5813 19 1 2.7793 -11.2386 -4.5837 20 1 4.3065 -9.8084 -5.8089 21 1 5.1609 -11.6956 -4.5483 22 6 2.5666 -8.5136 0.0122 23 6 1.5882 -7.3456 0.1724 24 1 -0.3633 -0.1017 1.0226 25 1 -0.3633 0.9365 -0.4231 26 1 -0.3633 -0.8347 -0.5995 27 1 2.8872 1.3629 -0.8899 28 1 1.5522 2.1336 -0.0005 29 1 2.8871 1.3629 0.8900 30 1 3.2458 -1.1553 -0.1150 31 1 3.0480 -3.5988 -0.1688 32 1 0.9459 -4.9021 1.1947 33 1 0.5792 -4.9172 -0.5471 34 1 3.0302 -5.9856 2.0427 35 1 4.1507 -6.7725 0.9050 36 1 3.9989 -4.9993 0.9216 37 1 2.1558 -6.0463 -2.1454 38 1 3.4669 -5.0097 -1.5316 39 1 4.7834 -6.9779 -0.8992 40 1 4.3026 -7.1295 -2.6089 41 1 6.1782 -8.9749 -3.4979 42 1 3.2948 -8.4934 0.8230 43 1 2.0184 -9.4554 0.0367 44 1 1.1380 -7.3811 1.1644 45 1 0.8076 -7.4190 -0.5848 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324840241.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:58 Heat of formation + Delta-G solvation = -14.504441 kcal Electronic energy + Delta-G solvation = -22600.378339 eV Core-core repulsion = 19425.226742 eV Total energy + Delta-G solvation = -3175.151596 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.95810 -38.56016 -35.76050 -34.81068 -33.10548 -30.93235 -29.91124 -28.54930 -27.88387 -27.05644 -26.23410 -23.94455 -22.36414 -21.24910 -20.51097 -18.89008 -17.94494 -16.98963 -16.39317 -15.59706 -15.27080 -14.85770 -14.46981 -14.27569 -14.05130 -13.81658 -13.71786 -13.43540 -13.28944 -12.80909 -12.65721 -12.57660 -12.47921 -12.02660 -11.73483 -11.69298 -11.46313 -11.27069 -11.16619 -10.76184 -10.69398 -10.50732 -10.17384 -10.15683 -9.79569 -9.61689 -9.43298 -9.40153 -9.28247 -8.74232 -8.44286 -6.64921 -5.78112 -3.19574 1.29402 3.34932 3.37157 3.41545 3.45348 3.47538 4.50331 4.63631 4.68180 5.05329 5.11440 5.20523 5.24146 5.26567 5.31166 5.42320 5.50242 5.53882 5.58929 5.71886 5.80766 5.89080 5.95472 6.01770 6.11456 6.13657 6.17152 6.33555 6.34806 6.43127 6.49856 6.51112 6.61513 6.67446 6.72523 6.80880 6.89694 7.01368 7.38835 7.68726 7.69555 7.80654 8.37542 8.46033 9.22791 9.86481 10.42654 11.30102 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.027718 B = 0.003511 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.944128 B = 7973.776090 C = 8347.101970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.037 4.037 3 C -0.127 4.127 4 C -0.234 4.234 5 C 0.541 3.459 6 O -0.549 6.549 7 N -0.719 5.719 8 C 0.131 3.869 9 C -0.064 4.064 10 C -0.141 4.141 11 C -0.129 4.129 12 C 0.170 3.830 13 N -0.592 5.592 14 C -0.249 4.249 15 H 0.065 0.935 16 C 0.000 4.000 17 N -0.904 5.904 18 Si 0.901 3.099 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.291 1.291 22 C 0.146 3.854 23 C -0.120 4.120 24 H 0.077 0.923 25 H 0.052 0.948 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.125 0.875 31 H 0.401 0.599 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.044 0.956 37 H 0.055 0.945 38 H 0.045 0.955 39 H 0.020 0.980 40 H 0.087 0.913 41 H 0.252 0.748 42 H 0.020 0.980 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.740 16.331 6.690 18.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.039 4.039 3 C -0.183 4.183 4 C -0.255 4.255 5 C 0.331 3.669 6 O -0.430 6.430 7 N -0.370 5.370 8 C 0.007 3.993 9 C -0.065 4.065 10 C -0.198 4.198 11 C -0.169 4.169 12 C 0.045 3.955 13 N -0.315 5.315 14 C -0.378 4.378 15 H 0.083 0.917 16 C -0.198 4.198 17 N -0.549 5.549 18 Si 0.731 3.269 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.218 1.218 22 C 0.020 3.980 23 C -0.160 4.160 24 H 0.096 0.904 25 H 0.071 0.929 26 H 0.107 0.893 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.143 0.857 31 H 0.237 0.763 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.038 0.962 40 H 0.105 0.895 41 H 0.062 0.938 42 H 0.038 0.962 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.434 16.274 6.764 18.442 hybrid contribution 0.600 -0.556 -0.921 1.232 sum -4.835 15.718 5.842 17.452 Atomic orbital electron populations 1.21160 0.90929 1.02279 1.03542 1.22533 0.96875 0.94395 0.90112 1.21004 1.00258 0.94238 1.02838 1.22390 1.00295 0.92236 1.10615 1.18536 0.86898 0.84330 0.77181 1.90735 1.15306 1.87793 1.49149 1.46024 1.13335 1.05763 1.71886 1.21501 0.94700 0.82043 1.01033 1.20694 0.95046 0.93772 0.96953 1.21932 0.98570 1.01885 0.97459 1.22245 1.00513 0.99716 0.94390 1.20818 0.90692 0.82182 1.01843 1.44047 1.61689 1.11705 1.14029 1.19247 1.02582 1.05602 1.10396 0.91692 1.25008 0.94639 0.99364 1.00785 1.70027 1.02805 1.45863 1.36200 0.86240 0.77498 0.79924 0.83233 1.20298 1.21623 1.21782 1.20907 0.93210 0.95014 0.88917 1.21996 0.98781 0.95101 1.00088 0.90429 0.92873 0.89257 0.90677 0.91307 0.90618 0.85743 0.76335 0.92092 0.91865 0.93468 0.90782 0.93698 0.92611 0.93672 0.96155 0.89459 0.93772 0.96186 0.92948 0.92973 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 8.43 36.01 0.30 -1.01 16 2 C -0.04 -0.37 6.11 -101.17 -0.62 -0.99 16 3 C -0.13 -0.86 10.06 36.00 0.36 -0.49 16 4 C -0.23 -2.58 9.67 -37.81 -0.37 -2.95 16 5 C 0.54 7.60 7.61 -12.66 -0.10 7.50 16 6 O -0.55 -9.23 13.30 5.27 0.07 -9.16 16 7 N -0.72 -9.61 4.94 -61.49 -0.30 -9.92 16 8 C 0.13 1.93 4.56 -4.04 -0.02 1.91 16 9 C -0.06 -1.01 0.53 -154.47 -0.08 -1.10 16 10 C -0.14 -2.11 7.54 37.16 0.28 -1.83 16 11 C -0.13 -2.35 4.75 -26.62 -0.13 -2.48 16 12 C 0.17 3.90 4.84 -3.71 -0.02 3.88 16 13 N -0.59 -14.47 3.00 -172.32 -0.52 -14.98 16 14 C -0.25 -6.76 9.60 -15.06 -0.14 -6.90 16 15 H 0.07 1.75 7.88 -52.48 -0.41 1.34 16 16 C 0.00 0.00 4.93 -17.43 -0.09 -0.08 16 17 N -0.90 -25.86 11.11 55.49 0.62 -25.25 16 18 Si 0.90 21.63 29.58 -169.99 -5.03 16.60 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 C 0.15 2.98 6.04 -3.71 -0.02 2.95 16 23 C -0.12 -2.04 4.91 -26.61 -0.13 -2.17 16 24 H 0.08 0.87 8.03 -51.93 -0.42 0.46 16 25 H 0.05 0.45 7.94 -51.93 -0.41 0.03 16 26 H 0.09 1.17 6.16 -51.93 -0.32 0.85 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.39 7.87 -51.93 -0.41 -0.02 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 31 H 0.40 4.78 6.14 -40.82 -0.25 4.53 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 1.29 4.98 -51.93 -0.26 1.03 16 36 H 0.04 0.59 6.86 -51.93 -0.36 0.24 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.04 0.73 6.82 -51.93 -0.35 0.37 16 39 H 0.02 0.48 6.69 -51.93 -0.35 0.14 16 40 H 0.09 2.29 5.98 -51.93 -0.31 1.98 16 41 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.02 0.41 6.69 -51.93 -0.35 0.06 16 43 H 0.05 1.06 7.94 -51.93 -0.41 0.65 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 344.31 15.07 5.19 5.19 Total: -1.00 -30.36 344.31 -8.28 -38.64 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -7.55 Total: 2.62 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -0.76 Total: -3.74 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: -0.20 Total: -50.14 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.07 Total: -9.16 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.36 -8.28 -38.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324840241.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.140 kcal (2) G-P(sol) polarization free energy of solvation -30.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds