Wall clock time and date at job start Tue Mar 31 2020 02:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.50697 * 119.99954 * 2 1 4 4 C 1.32990 * 120.00026 * 179.97438 * 2 1 3 5 5 C 1.47101 * 119.99837 * 352.90591 * 4 2 1 6 6 O 1.21608 * 120.00146 * 353.36169 * 5 4 2 7 7 N 1.34779 * 119.99851 * 173.63215 * 5 4 2 8 8 C 1.46497 * 119.99980 * 179.72415 * 7 5 4 9 9 C 1.53006 * 109.47042 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.45966 * 60.02855 * 9 8 7 11 11 C 1.53035 * 109.46057 * 300.06748 * 9 8 7 12 12 C 1.53188 * 109.31400 * 178.61152 * 11 9 8 13 13 N 1.46925 * 108.77283 * 54.63979 * 12 11 9 14 14 C 1.36941 * 120.63104 * 126.41477 * 13 12 11 15 15 H 1.08006 * 119.99556 * 207.31036 * 14 13 12 16 16 C 1.38808 * 120.00096 * 27.31091 * 14 13 12 17 17 N 1.31613 * 120.00119 * 16.61100 * 16 14 13 18 18 Si 1.86797 * 119.99780 * 196.60846 * 16 14 13 19 19 H 1.48501 * 109.47575 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47153 * 120.00145 * 18 16 14 21 21 H 1.48500 * 109.47082 * 240.00175 * 18 16 14 22 22 C 1.46922 * 118.73936 * 306.38657 * 13 12 11 23 23 C 1.53040 * 109.45832 * 179.97438 * 9 8 7 24 24 H 1.08997 * 109.47167 * 264.31782 * 1 2 3 25 25 H 1.08998 * 109.46788 * 24.31170 * 1 2 3 26 26 H 1.08996 * 109.46992 * 144.31357 * 1 2 3 27 27 H 1.08995 * 109.47453 * 240.00115 * 3 2 1 28 28 H 1.09000 * 109.47148 * 359.97438 * 3 2 1 29 29 H 1.08998 * 109.47455 * 119.99296 * 3 2 1 30 30 H 1.07994 * 119.99716 * 172.90471 * 4 2 1 31 31 H 0.97004 * 119.99817 * 359.73620 * 7 5 4 32 32 H 1.09004 * 109.47411 * 299.99791 * 8 7 5 33 33 H 1.08997 * 109.47045 * 60.00553 * 8 7 5 34 34 H 1.08996 * 109.47635 * 59.99831 * 10 9 8 35 35 H 1.08999 * 109.47272 * 180.02562 * 10 9 8 36 36 H 1.09003 * 109.47343 * 300.00311 * 10 9 8 37 37 H 1.08994 * 109.49825 * 298.56799 * 11 9 8 38 38 H 1.09003 * 109.49615 * 58.66119 * 11 9 8 39 39 H 1.08998 * 109.59056 * 294.84852 * 12 11 9 40 40 H 1.09004 * 109.58921 * 174.42159 * 12 11 9 41 41 H 0.97000 * 120.00021 * 180.02562 * 17 16 14 42 42 H 1.08997 * 109.59039 * 293.82879 * 22 13 12 43 43 H 1.09001 * 109.71113 * 173.46512 * 22 13 12 44 44 H 1.09000 * 109.49876 * 301.33517 * 23 9 8 45 45 H 1.08998 * 109.49969 * 61.43763 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 2.1720 -1.1517 0.0005 5 6 1.4450 -2.4207 0.1584 6 8 0.2550 -2.4126 0.4089 7 7 2.0988 -3.5923 0.0309 8 6 1.3760 -4.8561 0.1941 9 6 2.3435 -6.0256 0.0012 10 6 3.4611 -5.9397 1.0426 11 6 2.9490 -5.9601 -1.4027 12 6 3.9429 -7.1122 -1.5801 13 7 3.2598 -8.3770 -1.2760 14 6 3.2696 -9.4092 -2.1758 15 1 2.4609 -10.1251 -2.1852 16 6 4.3187 -9.5354 -3.0759 17 7 5.4452 -8.8870 -2.8687 18 14 4.1318 -10.6255 -4.5813 19 1 2.7793 -11.2386 -4.5837 20 1 4.3065 -9.8084 -5.8089 21 1 5.1609 -11.6956 -4.5483 22 6 2.5666 -8.5136 0.0122 23 6 1.5882 -7.3456 0.1724 24 1 -0.3633 -0.1017 1.0226 25 1 -0.3633 0.9365 -0.4231 26 1 -0.3633 -0.8347 -0.5995 27 1 2.8872 1.3629 -0.8899 28 1 1.5522 2.1336 -0.0005 29 1 2.8871 1.3629 0.8900 30 1 3.2458 -1.1553 -0.1150 31 1 3.0480 -3.5988 -0.1688 32 1 0.9459 -4.9021 1.1947 33 1 0.5792 -4.9172 -0.5471 34 1 3.0302 -5.9856 2.0427 35 1 4.1507 -6.7725 0.9050 36 1 3.9989 -4.9993 0.9216 37 1 2.1558 -6.0463 -2.1454 38 1 3.4669 -5.0097 -1.5316 39 1 4.7834 -6.9779 -0.8992 40 1 4.3026 -7.1295 -2.6089 41 1 6.1782 -8.9749 -3.4979 42 1 3.2948 -8.4934 0.8230 43 1 2.0184 -9.4554 0.0367 44 1 1.1380 -7.3811 1.1644 45 1 0.8076 -7.4190 -0.5848 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324840241.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:57 Heat of formation + Delta-G solvation = -32.355965 kcal Electronic energy + Delta-G solvation = -22601.152439 eV Core-core repulsion = 19425.226742 eV Total energy + Delta-G solvation = -3175.925697 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.12259 -39.93646 -36.88915 -36.06743 -34.62993 -32.70027 -31.57523 -29.55313 -28.62543 -28.49290 -27.50641 -25.65613 -23.93799 -22.71044 -21.79113 -19.92980 -19.49843 -18.25207 -17.88651 -16.84803 -16.65015 -16.39345 -15.75964 -15.57754 -15.22140 -15.09153 -15.01422 -14.89053 -14.40977 -14.37059 -14.03330 -13.44580 -13.33598 -13.22646 -13.10579 -12.95542 -12.68221 -12.61711 -12.56917 -12.37339 -12.32364 -12.21604 -11.87971 -11.79890 -11.45628 -11.12312 -11.05290 -10.59503 -10.48258 -10.21116 -9.75289 -8.63218 -7.85642 -5.29412 0.44759 1.44993 1.47468 1.57354 2.34245 2.38020 2.51750 3.28123 3.72606 3.79414 3.87600 3.88294 3.96553 3.96635 4.32784 4.42814 4.52587 4.60487 4.62193 4.71667 4.72025 4.76976 4.83534 4.85538 4.86295 4.92982 4.96248 5.06382 5.08992 5.13743 5.20127 5.28538 5.32109 5.40562 5.49327 5.51385 5.56384 5.60997 5.66906 5.68876 5.86239 6.41509 6.66352 7.17936 7.33165 7.90503 8.40528 9.19982 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.027718 B = 0.003511 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.944128 B = 7973.776090 C = 8347.101970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.028 4.028 3 C -0.124 4.124 4 C -0.252 4.252 5 C 0.535 3.465 6 O -0.584 6.584 7 N -0.715 5.715 8 C 0.143 3.857 9 C -0.054 4.054 10 C -0.135 4.135 11 C -0.116 4.116 12 C 0.179 3.821 13 N -0.611 5.611 14 C -0.260 4.260 15 H 0.062 0.938 16 C -0.051 4.051 17 N -0.932 5.932 18 Si 0.963 3.037 19 H -0.270 1.270 20 H -0.290 1.290 21 H -0.292 1.292 22 C 0.143 3.857 23 C -0.112 4.112 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.149 0.851 31 H 0.409 0.591 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.063 0.937 37 H 0.040 0.960 38 H 0.068 0.932 39 H 0.008 0.992 40 H 0.049 0.951 41 H 0.249 0.751 42 H 0.023 0.977 43 H 0.048 0.952 44 H 0.081 0.919 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.988 18.189 7.374 20.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.030 4.030 3 C -0.180 4.180 4 C -0.272 4.272 5 C 0.326 3.674 6 O -0.467 6.467 7 N -0.366 5.366 8 C 0.019 3.981 9 C -0.055 4.055 10 C -0.192 4.192 11 C -0.155 4.155 12 C 0.053 3.947 13 N -0.334 5.334 14 C -0.390 4.390 15 H 0.080 0.920 16 C -0.246 4.246 17 N -0.579 5.579 18 Si 0.792 3.208 19 H -0.194 1.194 20 H -0.217 1.217 21 H -0.219 1.219 22 C 0.017 3.983 23 C -0.152 4.152 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.167 0.833 31 H 0.246 0.754 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.086 0.914 39 H 0.026 0.974 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.041 0.959 43 H 0.066 0.934 44 H 0.100 0.900 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.685 18.137 7.464 20.420 hybrid contribution 0.637 -1.112 -1.092 1.684 sum -5.048 17.024 6.371 18.865 Atomic orbital electron populations 1.21123 0.91912 1.02356 1.02645 1.22874 0.96518 0.95707 0.87932 1.21068 1.00507 0.92498 1.03955 1.22459 1.01377 0.90932 1.12455 1.19086 0.86645 0.85281 0.76361 1.90726 1.16861 1.88295 1.50803 1.45955 1.13648 1.05232 1.71788 1.21234 0.93924 0.82086 1.00852 1.20562 0.95431 0.93838 0.95629 1.21855 0.97692 1.01758 0.97916 1.22043 0.99018 0.98707 0.95750 1.20612 0.91497 0.83450 0.99131 1.44313 1.62133 1.11722 1.15267 1.19534 1.02307 1.06063 1.11141 0.91994 1.25708 0.94480 1.01115 1.03285 1.70166 1.03350 1.47411 1.36936 0.85271 0.77545 0.78173 0.79854 1.19428 1.21730 1.21893 1.21041 0.93542 0.96499 0.87182 1.21888 0.97659 0.94122 1.01488 0.91282 0.90530 0.91986 0.89398 0.90085 0.89371 0.83294 0.75351 0.91585 0.93230 0.91684 0.93438 0.91845 0.94105 0.91351 0.97419 0.93246 0.94189 0.95941 0.93356 0.90026 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.50 8.43 71.24 0.60 -1.90 16 2 C -0.03 -0.50 6.11 -17.61 -0.11 -0.61 16 3 C -0.12 -1.24 10.06 71.23 0.72 -0.52 16 4 C -0.25 -4.98 9.67 23.43 0.23 -4.76 16 5 C 0.53 14.29 7.61 86.57 0.66 14.95 16 6 O -0.58 -19.37 13.30 -4.06 -0.05 -19.43 16 7 N -0.71 -17.77 4.94 -466.71 -2.31 -20.08 16 8 C 0.14 3.98 4.56 86.38 0.39 4.37 16 9 C -0.05 -1.63 0.53 -52.16 -0.03 -1.66 16 10 C -0.14 -3.75 7.54 71.98 0.54 -3.21 16 11 C -0.12 -4.17 4.75 30.67 0.15 -4.02 16 12 C 0.18 8.34 4.84 86.36 0.42 8.76 16 13 N -0.61 -30.35 3.00 -699.10 -2.10 -32.44 16 14 C -0.26 -14.39 9.60 84.03 0.81 -13.59 16 15 H 0.06 3.39 7.88 -2.91 -0.02 3.36 16 16 C -0.05 -2.83 4.93 84.86 0.42 -2.41 16 17 N -0.93 -54.70 11.11 21.65 0.24 -54.46 16 18 Si 0.96 45.20 29.58 68.60 2.03 47.23 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 20 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 21 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 22 C 0.14 5.79 6.04 86.37 0.52 6.32 16 23 C -0.11 -3.66 4.91 30.67 0.15 -3.51 16 24 H 0.07 1.51 8.03 -2.39 -0.02 1.49 16 25 H 0.08 1.13 7.94 -2.39 -0.02 1.11 16 26 H 0.06 1.62 6.16 -2.39 -0.01 1.60 16 27 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.08 0.63 7.87 -2.39 -0.02 0.61 16 29 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 31 H 0.41 8.73 6.14 -92.71 -0.57 8.16 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.05 1.60 4.98 -2.39 -0.01 1.58 16 36 H 0.06 1.52 6.86 -2.39 -0.02 1.50 16 37 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.07 2.11 6.82 -2.39 -0.02 2.10 16 39 H 0.01 0.38 6.69 -2.39 -0.02 0.36 16 40 H 0.05 2.68 5.98 -2.38 -0.01 2.66 16 41 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 42 H 0.02 0.91 6.69 -2.39 -0.02 0.90 16 43 H 0.05 1.96 7.94 -2.39 -0.02 1.94 16 44 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -67.26 344.31 3.68 -63.58 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.40 Total: 17.39 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 5.47 Total: -1.78 kcal Atomic # 7 Polarization: -102.82 SS G_CDS: -4.16 Total: -106.98 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.05 Total: -19.43 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -67.26 3.68 -63.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324840241.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.224 kcal (2) G-P(sol) polarization free energy of solvation -67.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds