Wall clock time and date at job start Tue Mar 31 2020 02:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46793 * 2 1 4 4 C 1.50701 * 109.46959 * 240.00473 * 2 1 3 5 5 H 1.07998 * 119.99417 * 239.99676 * 4 2 1 6 6 C 1.37873 * 120.00148 * 59.99854 * 4 2 1 7 7 N 1.31513 * 120.00422 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 119.99703 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47115 * 59.99482 * 8 6 4 10 10 H 1.48498 * 109.46889 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46679 * 299.99343 * 8 6 4 12 12 C 1.52992 * 109.47336 * 120.00010 * 2 1 3 13 13 N 1.46500 * 109.47053 * 300.00278 * 12 2 1 14 14 C 1.34785 * 119.99994 * 180.02562 * 13 12 2 15 15 O 1.21582 * 119.99770 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00128 * 180.02562 * 14 13 12 17 17 C 1.47590 * 122.01474 * 0.60692 * 16 14 13 18 18 C 1.53646 * 106.68611 * 179.15775 * 17 16 14 19 19 C 1.53060 * 108.96514 * 300.59398 * 18 17 16 20 20 C 1.52924 * 109.98802 * 60.36851 * 19 18 17 21 21 C 1.47641 * 122.01916 * 179.97438 * 16 14 13 22 22 C 1.53389 * 108.38078 * 121.78473 * 21 16 14 23 23 C 1.53073 * 109.62759 * 60.04486 * 18 17 16 24 24 H 1.08993 * 109.47057 * 299.99478 * 1 2 3 25 25 H 1.08994 * 109.47521 * 60.00505 * 1 2 3 26 26 H 1.09008 * 109.46655 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47004 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.46889 * 300.00425 * 3 2 1 29 29 H 1.09003 * 109.46613 * 59.99943 * 3 2 1 30 30 H 0.97001 * 120.00339 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.47246 * 180.02562 * 12 2 1 32 32 H 1.08998 * 109.47436 * 59.99916 * 12 2 1 33 33 H 0.96996 * 120.00523 * 0.02562 * 13 12 2 34 34 H 1.08996 * 110.01081 * 59.86365 * 17 16 14 35 35 H 1.09001 * 110.08637 * 298.49023 * 17 16 14 36 36 H 1.08994 * 109.68078 * 180.52190 * 18 17 16 37 37 H 1.08993 * 109.38246 * 300.21323 * 19 18 17 38 38 H 1.08997 * 109.29646 * 180.47450 * 19 18 17 39 39 H 1.08996 * 109.44821 * 238.55245 * 20 19 18 40 40 H 1.09001 * 109.44603 * 118.64239 * 20 19 18 41 41 H 1.09002 * 110.58686 * 0.41688 * 21 16 14 42 42 H 1.09003 * 109.45229 * 176.37131 * 22 21 16 43 43 H 1.08997 * 109.45199 * 296.31107 * 22 21 16 44 44 H 1.08999 * 109.37215 * 60.12974 * 23 18 17 45 45 H 1.08993 * 109.37893 * 179.89802 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9427 0.8298 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 1.8259 -2.5201 -4.0077 10 1 1.8259 -0.4204 -5.2205 11 1 3.8064 -1.1206 -4.0082 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4453 14 6 1.8778 -0.4908 3.6695 15 8 2.5768 -1.4793 3.7810 16 7 1.4281 0.1441 4.7699 17 6 0.5656 1.3389 4.6864 18 6 0.2488 1.7562 6.1307 19 6 -0.4596 0.5989 6.8389 20 6 0.4451 -0.6338 6.8594 21 6 1.7573 -0.3214 6.1318 22 6 2.4665 0.8182 6.8743 23 6 1.5500 2.0778 6.8701 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 0.7081 1.1610 -3.4844 31 1 3.1301 -0.7208 1.2494 32 1 1.6768 -1.7489 1.2492 33 1 0.9937 0.7578 2.3564 34 1 -0.3562 1.0971 4.1574 35 1 1.0902 2.1441 4.1721 36 1 -0.3971 2.6341 6.1259 37 1 -1.3824 0.3616 6.3097 38 1 -0.6945 0.8924 7.8620 39 1 -0.0582 -1.4617 6.3602 40 1 0.6594 -0.9095 7.8920 41 1 2.3927 -1.2062 6.0913 42 1 2.6603 0.5156 7.9034 43 1 3.4107 1.0424 6.3781 44 1 2.0619 2.8952 6.3623 45 1 1.3205 2.3750 7.8933 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325296915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:14 Heat of formation + Delta-G solvation = -45.070241 kcal Electronic energy + Delta-G solvation = -23302.524163 eV Core-core repulsion = 20126.047134 eV Total energy + Delta-G solvation = -3176.477029 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.75689 -38.49927 -36.25634 -33.52254 -32.73525 -31.62535 -30.83121 -30.50038 -25.88811 -25.69014 -25.32662 -24.39620 -22.76867 -22.44837 -20.31102 -18.78425 -18.16242 -17.05846 -16.30332 -15.94639 -15.83680 -15.26278 -14.76600 -14.37328 -14.33486 -13.34611 -13.23449 -13.08307 -12.75302 -12.67097 -12.41627 -12.28772 -12.23003 -12.20218 -12.07225 -11.53019 -11.31469 -11.15540 -10.81707 -10.70093 -10.52807 -10.36270 -10.31277 -10.27695 -10.16986 -9.62202 -9.59110 -9.25379 -8.76214 -8.53488 -8.36113 -8.04287 -5.98909 -4.08721 2.97227 3.32527 3.36444 3.40630 3.68268 4.35151 4.41107 4.47728 4.53982 4.64314 4.91891 5.05770 5.14370 5.15078 5.20288 5.27744 5.35146 5.43718 5.61035 5.73293 5.75990 5.79364 5.86686 6.02399 6.06392 6.09283 6.16710 6.27388 6.41563 6.54615 6.66307 6.85490 6.86369 6.98473 7.07112 7.17082 7.38332 7.47249 7.59411 7.72771 8.04474 8.15929 8.41911 8.51121 8.90932 9.12371 9.56782 11.02501 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.036056 B = 0.003901 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.389254 B = 7175.718139 C = 7426.413207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.129 4.129 4 C -0.505 4.505 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.150 3.850 13 N -0.732 5.732 14 C 0.705 3.295 15 O -0.601 6.601 16 N -0.632 5.632 17 C 0.115 3.885 18 C -0.097 4.097 19 C -0.111 4.111 20 C -0.130 4.130 21 C 0.160 3.840 22 C -0.129 4.129 23 C -0.111 4.111 24 H 0.004 0.996 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.085 0.915 29 H 0.004 0.996 30 H 0.260 0.740 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.393 0.607 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.102 0.898 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.142 4.382 18.535 19.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.055 3.945 3 C -0.186 4.186 4 C -0.543 4.543 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.027 3.973 13 N -0.386 5.386 14 C 0.406 3.594 15 O -0.481 6.481 16 N -0.371 5.371 17 C -0.008 4.008 18 C -0.116 4.116 19 C -0.149 4.149 20 C -0.168 4.168 21 C 0.056 3.944 22 C -0.168 4.168 23 C -0.149 4.149 24 H 0.023 0.977 25 H 0.103 0.897 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.103 0.897 29 H 0.023 0.977 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.228 0.772 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.120 0.880 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.692 3.750 18.391 18.962 hybrid contribution -0.022 0.003 -0.939 0.939 sum -2.715 3.754 17.452 18.057 Atomic orbital electron populations 1.21809 0.97811 0.99117 0.99901 1.18358 0.92774 0.92768 0.90576 1.21808 0.98549 0.98374 0.99901 1.20951 1.31436 1.12075 0.89879 0.92478 1.24871 0.94878 0.94926 0.98797 1.69795 1.36687 1.22799 1.23257 0.86634 0.79238 0.79799 0.82186 1.20294 1.21362 1.20287 1.21571 0.97832 0.95406 0.82501 1.45546 1.55503 1.33025 1.04535 1.15918 0.80348 0.82649 0.80452 1.90856 1.43624 1.27862 1.85739 1.47644 1.54169 1.30551 1.04779 1.21834 0.94262 0.87761 0.96912 1.21418 0.97384 0.98639 0.94153 1.21496 0.98304 0.94747 1.00361 1.21940 0.96246 0.98169 1.00471 1.21107 0.95679 0.97324 0.80300 1.22446 0.98755 0.95258 1.00297 1.21979 0.95163 0.97610 1.00134 0.97664 0.89664 0.95484 0.95482 0.89663 0.97668 0.93004 0.93042 0.93044 0.77183 0.91566 0.91574 0.89725 0.91840 0.91784 0.91557 0.91074 0.87952 0.91061 0.91455 0.91827 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 2 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 3 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 4 C -0.50 -13.43 8.01 -34.44 -0.28 -13.70 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 7 N -0.89 -23.78 9.35 55.43 0.52 -23.27 16 8 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 12 C 0.15 3.34 4.50 -4.05 -0.02 3.33 16 13 N -0.73 -14.02 4.89 -65.23 -0.32 -14.34 16 14 C 0.70 13.48 8.37 -86.91 -0.73 12.75 16 15 O -0.60 -13.69 15.93 5.29 0.08 -13.61 16 16 N -0.63 -9.26 2.82 -169.28 -0.48 -9.74 16 17 C 0.12 1.34 4.98 -3.11 -0.02 1.33 16 18 C -0.10 -0.87 3.27 -90.22 -0.29 -1.16 16 19 C -0.11 -0.97 5.65 -26.74 -0.15 -1.12 16 20 C -0.13 -1.31 5.84 -26.64 -0.16 -1.47 16 21 C 0.16 1.99 3.50 -66.97 -0.23 1.76 16 22 C -0.13 -1.30 5.99 -25.05 -0.15 -1.45 16 23 C -0.11 -0.96 5.82 -25.21 -0.15 -1.10 16 24 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 25 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 26 H 0.03 0.62 8.14 -51.92 -0.42 0.19 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 29 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 30 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.39 6.87 4.80 -40.82 -0.20 6.68 16 34 H 0.07 0.76 8.07 -51.93 -0.42 0.35 16 35 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.10 1.48 7.19 -51.93 -0.37 1.11 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 337.49 15.07 5.09 5.09 Total: -1.00 -29.35 337.49 -9.66 -39.01 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -7.79 Total: 4.19 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -1.74 Total: -3.23 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -0.28 Total: -47.34 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: 0.08 Total: -13.61 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.35 -9.66 -39.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325296915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.061 kcal (2) G-P(sol) polarization free energy of solvation -29.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds