Wall clock time and date at job start Tue Mar 31 2020 02:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46793 * 2 1 4 4 C 1.50701 * 109.46959 * 240.00473 * 2 1 3 5 5 H 1.07998 * 119.99417 * 239.99676 * 4 2 1 6 6 C 1.37873 * 120.00148 * 59.99854 * 4 2 1 7 7 N 1.31513 * 120.00422 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 119.99703 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47115 * 59.99482 * 8 6 4 10 10 H 1.48498 * 109.46889 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46679 * 299.99343 * 8 6 4 12 12 C 1.52992 * 109.47336 * 120.00010 * 2 1 3 13 13 N 1.46500 * 109.47053 * 300.00278 * 12 2 1 14 14 C 1.34785 * 119.99994 * 180.02562 * 13 12 2 15 15 O 1.21582 * 119.99770 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00128 * 180.02562 * 14 13 12 17 17 C 1.47590 * 122.01474 * 0.60692 * 16 14 13 18 18 C 1.53646 * 106.68611 * 179.15775 * 17 16 14 19 19 C 1.53060 * 108.96514 * 300.59398 * 18 17 16 20 20 C 1.52924 * 109.98802 * 60.36851 * 19 18 17 21 21 C 1.47641 * 122.01916 * 179.97438 * 16 14 13 22 22 C 1.53389 * 108.38078 * 121.78473 * 21 16 14 23 23 C 1.53073 * 109.62759 * 60.04486 * 18 17 16 24 24 H 1.08993 * 109.47057 * 299.99478 * 1 2 3 25 25 H 1.08994 * 109.47521 * 60.00505 * 1 2 3 26 26 H 1.09008 * 109.46655 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47004 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.46889 * 300.00425 * 3 2 1 29 29 H 1.09003 * 109.46613 * 59.99943 * 3 2 1 30 30 H 0.97001 * 120.00339 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.47246 * 180.02562 * 12 2 1 32 32 H 1.08998 * 109.47436 * 59.99916 * 12 2 1 33 33 H 0.96996 * 120.00523 * 0.02562 * 13 12 2 34 34 H 1.08996 * 110.01081 * 59.86365 * 17 16 14 35 35 H 1.09001 * 110.08637 * 298.49023 * 17 16 14 36 36 H 1.08994 * 109.68078 * 180.52190 * 18 17 16 37 37 H 1.08993 * 109.38246 * 300.21323 * 19 18 17 38 38 H 1.08997 * 109.29646 * 180.47450 * 19 18 17 39 39 H 1.08996 * 109.44821 * 238.55245 * 20 19 18 40 40 H 1.09001 * 109.44603 * 118.64239 * 20 19 18 41 41 H 1.09002 * 110.58686 * 0.41688 * 21 16 14 42 42 H 1.09003 * 109.45229 * 176.37131 * 22 21 16 43 43 H 1.08997 * 109.45199 * 296.31107 * 22 21 16 44 44 H 1.08999 * 109.37215 * 60.12974 * 23 18 17 45 45 H 1.08993 * 109.37893 * 179.89802 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9427 0.8298 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 1.8259 -2.5201 -4.0077 10 1 1.8259 -0.4204 -5.2205 11 1 3.8064 -1.1206 -4.0082 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4453 14 6 1.8778 -0.4908 3.6695 15 8 2.5768 -1.4793 3.7810 16 7 1.4281 0.1441 4.7699 17 6 0.5656 1.3389 4.6864 18 6 0.2488 1.7562 6.1307 19 6 -0.4596 0.5989 6.8389 20 6 0.4451 -0.6338 6.8594 21 6 1.7573 -0.3214 6.1318 22 6 2.4665 0.8182 6.8743 23 6 1.5500 2.0778 6.8701 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 0.7081 1.1610 -3.4844 31 1 3.1301 -0.7208 1.2494 32 1 1.6768 -1.7489 1.2492 33 1 0.9937 0.7578 2.3564 34 1 -0.3562 1.0971 4.1574 35 1 1.0902 2.1441 4.1721 36 1 -0.3971 2.6341 6.1259 37 1 -1.3824 0.3616 6.3097 38 1 -0.6945 0.8924 7.8620 39 1 -0.0582 -1.4617 6.3602 40 1 0.6594 -0.9095 7.8920 41 1 2.3927 -1.2062 6.0913 42 1 2.6603 0.5156 7.9034 43 1 3.4107 1.0424 6.3781 44 1 2.0619 2.8952 6.3623 45 1 1.3205 2.3750 7.8933 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325296915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:13 Heat of formation + Delta-G solvation = -61.188770 kcal Electronic energy + Delta-G solvation = -23303.223115 eV Core-core repulsion = 20126.047134 eV Total energy + Delta-G solvation = -3177.175981 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.85845 -39.87117 -38.05789 -35.15475 -34.10856 -32.75692 -32.10946 -31.55032 -27.58148 -27.53688 -27.04502 -25.81623 -23.49187 -23.40731 -21.69079 -20.59935 -19.59867 -17.91444 -17.81987 -17.31523 -17.05804 -16.73594 -16.36480 -15.76330 -15.69204 -14.89405 -14.67846 -14.53007 -14.13027 -14.00983 -13.77288 -13.23158 -13.20949 -13.08925 -13.07551 -13.03143 -12.92507 -12.69014 -12.61481 -12.30957 -12.22286 -12.13388 -11.49950 -11.49620 -11.25652 -11.11367 -11.09456 -10.90427 -10.72083 -10.39776 -10.06357 -9.36214 -8.01993 -6.17782 1.44817 1.45404 1.52254 1.69574 2.17864 2.46227 3.11084 3.21453 3.62948 3.75732 3.79856 4.06343 4.20859 4.38867 4.40990 4.43108 4.49605 4.50928 4.51047 4.66057 4.68722 4.73613 4.89947 4.94939 4.98153 5.03788 5.08171 5.11497 5.18108 5.21336 5.25232 5.32995 5.37518 5.37541 5.39784 5.59933 5.65748 5.66014 5.67788 6.10673 6.13332 6.20507 6.43297 6.85428 7.04550 7.49682 7.61490 8.97012 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.036056 B = 0.003901 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.389254 B = 7175.718139 C = 7426.413207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.052 3.948 3 C -0.117 4.117 4 C -0.530 4.530 5 H 0.043 0.957 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.946 3.054 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.277 1.277 12 C 0.168 3.832 13 N -0.725 5.725 14 C 0.698 3.302 15 O -0.646 6.646 16 N -0.625 5.625 17 C 0.104 3.896 18 C -0.091 4.091 19 C -0.108 4.108 20 C -0.125 4.125 21 C 0.148 3.852 22 C -0.125 4.125 23 C -0.107 4.107 24 H 0.033 0.967 25 H 0.064 0.936 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.064 0.936 29 H 0.033 0.967 30 H 0.261 0.739 31 H 0.033 0.967 32 H 0.033 0.967 33 H 0.403 0.597 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.061 0.939 38 H 0.090 0.910 39 H 0.045 0.955 40 H 0.094 0.906 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.047 0.953 44 H 0.062 0.938 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.280 5.991 20.444 21.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.051 3.949 3 C -0.175 4.175 4 C -0.569 4.569 5 H 0.062 0.938 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.773 3.227 9 H -0.203 1.203 10 H -0.206 1.206 11 H -0.203 1.203 12 C 0.043 3.957 13 N -0.381 5.381 14 C 0.399 3.601 15 O -0.529 6.529 16 N -0.363 5.363 17 C -0.018 4.018 18 C -0.110 4.110 19 C -0.146 4.146 20 C -0.163 4.163 21 C 0.045 3.955 22 C -0.163 4.163 23 C -0.144 4.144 24 H 0.052 0.948 25 H 0.083 0.917 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.240 0.760 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.130 0.870 37 H 0.080 0.920 38 H 0.109 0.891 39 H 0.064 0.936 40 H 0.113 0.887 41 H 0.090 0.910 42 H 0.112 0.888 43 H 0.066 0.934 44 H 0.081 0.919 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.862 5.404 20.341 21.398 hybrid contribution 0.340 -0.508 -1.480 1.601 sum -3.522 4.895 18.861 19.802 Atomic orbital electron populations 1.21638 0.97058 0.98559 1.00230 1.18358 0.93302 0.93065 0.90126 1.21637 0.97825 0.97791 1.00228 1.21219 1.31900 1.12237 0.91544 0.93830 1.25438 0.95077 0.95583 1.00891 1.69892 1.36843 1.23246 1.23710 0.85808 0.78612 0.78804 0.79525 1.20305 1.20635 1.20293 1.21123 0.96542 0.94620 0.83394 1.45251 1.55757 1.33163 1.03895 1.16127 0.80207 0.82477 0.81260 1.90818 1.45638 1.29960 1.86471 1.47753 1.53433 1.30800 1.04288 1.22162 0.93674 0.86370 0.99575 1.21469 0.98042 0.99621 0.91848 1.21512 0.97542 0.93620 1.01919 1.21915 0.94854 0.98533 1.01027 1.21342 0.97091 0.97406 0.79659 1.22422 0.97944 0.95163 1.00807 1.21997 0.94398 0.96369 1.01685 0.94817 0.91676 0.96440 0.96436 0.91674 0.94826 0.92953 0.94899 0.94899 0.76014 0.91297 0.91239 0.87026 0.92046 0.89137 0.93603 0.88747 0.91018 0.88754 0.93425 0.91919 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.35 8.08 71.98 0.58 -4.77 16 2 C 0.05 2.50 0.50 -52.93 -0.03 2.48 16 3 C -0.12 -5.35 8.08 71.98 0.58 -4.77 16 4 C -0.53 -28.76 8.01 25.60 0.21 -28.55 16 5 H 0.04 2.42 7.74 -2.91 -0.02 2.39 16 6 C 0.03 1.60 5.15 84.65 0.44 2.04 16 7 N -0.90 -48.22 9.35 21.45 0.20 -48.02 16 8 Si 0.95 43.10 29.54 68.60 2.03 45.13 16 9 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 C 0.17 7.67 4.50 86.38 0.39 8.06 16 13 N -0.73 -27.86 4.89 -478.54 -2.34 -30.20 16 14 C 0.70 27.16 8.37 179.05 1.50 28.66 16 15 O -0.65 -30.66 15.93 -3.97 -0.06 -30.73 16 16 N -0.62 -17.98 2.82 -807.75 -2.28 -20.26 16 17 C 0.10 2.19 4.98 86.39 0.43 2.62 16 18 C -0.09 -1.28 3.27 -10.53 -0.03 -1.31 16 19 C -0.11 -1.48 5.65 30.59 0.17 -1.31 16 20 C -0.12 -2.27 5.84 30.65 0.18 -2.10 16 21 C 0.15 3.60 3.50 44.99 0.16 3.75 16 22 C -0.12 -2.26 5.99 31.68 0.19 -2.07 16 23 C -0.11 -1.43 5.82 31.58 0.18 -1.25 16 24 H 0.03 1.30 6.86 -2.39 -0.02 1.28 16 25 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 26 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 3.27 6.07 -2.39 -0.01 3.25 16 29 H 0.03 1.30 6.86 -2.39 -0.02 1.28 16 30 H 0.26 13.48 8.31 -92.71 -0.77 12.71 16 31 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.03 1.60 8.14 -2.39 -0.02 1.59 16 33 H 0.40 13.62 4.80 -92.71 -0.45 13.18 16 34 H 0.07 1.43 8.07 -2.39 -0.02 1.41 16 35 H 0.07 1.43 8.09 -2.39 -0.02 1.41 16 36 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.07 2.16 7.19 -2.39 -0.02 2.15 16 42 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -65.09 337.49 3.00 -62.09 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.51 Total: 20.50 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 4.94 Total: 1.48 kcal Atomic # 7 Polarization: -94.06 SS G_CDS: -4.42 Total: -98.48 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -0.06 Total: -30.73 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -65.09 3.00 -62.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325296915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.900 kcal (2) G-P(sol) polarization free energy of solvation -65.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds