Wall clock time and date at job start Tue Mar 31 2020 02:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.46917 * 2 1 4 4 H 1.09003 * 115.56683 * 29.31106 * 3 2 1 5 5 C 1.53000 * 117.49889 * 243.62336 * 3 2 1 6 6 C 1.53003 * 60.00156 * 252.50819 * 5 3 2 7 7 H 1.08999 * 117.49582 * 107.50604 * 6 5 3 8 8 C 1.50703 * 117.50131 * 252.51004 * 6 5 3 9 9 O 1.21281 * 119.99923 * 68.60155 * 8 6 5 10 10 N 1.34773 * 119.99892 * 248.61038 * 8 6 5 11 11 C 1.47029 * 125.64802 * 359.96874 * 10 8 6 12 12 C 1.54327 * 107.26790 * 178.99157 * 11 10 8 13 13 C 1.55154 * 102.94290 * 337.80696 * 12 11 10 14 14 H 1.09002 * 111.00378 * 277.42832 * 13 12 11 15 15 C 1.53001 * 111.00204 * 153.61339 * 13 12 11 16 16 C 1.53000 * 109.46888 * 69.58445 * 15 13 12 17 17 N 1.46503 * 109.47203 * 180.02562 * 16 15 13 18 18 C 1.36938 * 120.00082 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99627 * 359.97438 * 18 17 16 20 20 C 1.38810 * 119.99686 * 179.97438 * 18 17 16 21 21 N 1.31622 * 119.99651 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00382 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47185 * 90.00031 * 22 20 18 24 24 H 1.48495 * 109.47272 * 209.99858 * 22 20 18 25 25 H 1.48501 * 109.47001 * 330.00173 * 22 20 18 26 26 C 1.47418 * 125.64700 * 180.02562 * 10 8 6 27 27 H 1.09003 * 109.46682 * 299.99911 * 1 2 3 28 28 H 1.08996 * 109.47180 * 60.00090 * 1 2 3 29 29 H 1.09000 * 109.46689 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46706 * 240.00336 * 2 1 3 31 31 H 1.08996 * 109.47180 * 119.99910 * 2 1 3 32 32 H 1.09003 * 117.50042 * 145.02255 * 5 3 2 33 33 H 1.08995 * 117.51689 * 359.97438 * 5 3 2 34 34 H 1.08993 * 109.88066 * 59.57140 * 11 10 8 35 35 H 1.08996 * 110.00664 * 298.48127 * 11 10 8 36 36 H 1.09004 * 110.71649 * 219.44279 * 12 11 10 37 37 H 1.09001 * 110.71543 * 96.16961 * 12 11 10 38 38 H 1.08999 * 109.47118 * 189.57787 * 15 13 12 39 39 H 1.08996 * 109.47145 * 309.58265 * 15 13 12 40 40 H 1.09000 * 109.47158 * 299.99324 * 16 15 13 41 41 H 1.08996 * 109.47375 * 59.99960 * 16 15 13 42 42 H 0.97002 * 119.99864 * 359.97438 * 17 16 15 43 43 H 0.96994 * 119.99941 * 179.97438 * 21 20 18 44 44 H 1.08995 * 110.37279 * 85.24185 * 26 10 8 45 45 H 1.08997 * 110.36990 * 322.91383 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1718 0.4814 5 6 2.8439 1.9076 -1.2159 6 6 3.5502 1.6580 0.1183 7 1 4.1806 0.7722 0.1959 8 6 4.0229 2.8621 0.8914 9 8 3.2158 3.6169 1.3912 10 7 5.3424 3.1002 1.0273 11 6 6.4240 2.2708 0.4760 12 6 7.7587 2.9430 0.8616 13 6 7.3436 4.4149 1.1234 14 1 7.2835 4.9757 0.1906 15 6 8.3045 5.0894 2.1045 16 6 9.6635 5.2899 1.4309 17 7 10.5838 5.9352 2.3706 18 6 11.8676 6.2175 1.9868 19 1 12.2018 5.9640 0.9916 20 6 12.7394 6.8294 2.8770 21 7 13.9736 7.1002 2.5083 22 14 12.1612 7.2684 4.5981 23 1 12.4209 6.1283 5.5134 24 1 12.8975 8.4656 5.0774 25 1 10.7053 7.5603 4.5717 26 6 5.9403 4.2348 1.7543 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.7212 2.9428 -1.5344 33 1 3.0101 1.1860 -2.0157 34 1 6.3349 2.2188 -0.6090 35 1 6.3780 1.2678 0.9001 36 1 8.4718 2.8838 0.0393 37 1 8.1708 2.4921 1.7643 38 1 7.9001 6.0569 2.4020 39 1 8.4252 4.4595 2.9859 40 1 10.0679 4.3224 1.1335 41 1 9.5428 5.9198 0.5496 42 1 10.2835 6.1632 3.2643 43 1 14.5827 7.5281 3.1302 44 1 6.0286 4.0014 2.8153 45 1 5.3419 5.1346 1.6115 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326373177.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:25 Heat of formation + Delta-G solvation = -15.370230 kcal Electronic energy + Delta-G solvation = -21393.705528 eV Core-core repulsion = 18218.516388 eV Total energy + Delta-G solvation = -3175.189140 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.48326 -38.56596 -36.97722 -35.33787 -33.07475 -32.37582 -31.14089 -29.72547 -28.03533 -25.16988 -24.16621 -23.22020 -22.76987 -21.34164 -20.80435 -20.27486 -19.17512 -17.60805 -17.44741 -16.34615 -15.87476 -15.06628 -14.96851 -14.72451 -14.56890 -14.16687 -13.91853 -13.63066 -13.29160 -13.03930 -12.88865 -12.70300 -12.58573 -12.48583 -12.25025 -11.80821 -11.72137 -11.57924 -11.41485 -11.28688 -10.88800 -10.72607 -10.63239 -10.54485 -10.42379 -10.37684 -10.11828 -9.95476 -9.59370 -8.89392 -8.81515 -7.23188 -5.77086 -3.12582 2.27867 2.72465 3.37628 3.40565 3.45448 3.48338 4.07666 4.35719 4.41094 4.44821 4.52249 4.59174 4.71401 4.77015 4.82723 4.94444 5.03878 5.04766 5.22031 5.28343 5.31428 5.38995 5.47429 5.49600 5.52732 5.58836 5.60036 5.69765 5.71234 5.74846 5.76669 5.82714 5.96125 6.00197 6.00712 6.12027 6.14370 6.29773 6.72051 6.76401 7.33144 7.98465 7.99299 8.42110 9.21367 9.93907 10.13679 11.41333 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.050413 B = 0.002479 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.277125 B =11293.403524 C =11561.806411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.118 4.118 4 H 0.118 0.882 5 C -0.147 4.147 6 C -0.187 4.187 7 H 0.122 0.878 8 C 0.557 3.443 9 O -0.544 6.544 10 N -0.615 5.615 11 C 0.101 3.899 12 C -0.128 4.128 13 C -0.094 4.094 14 H 0.087 0.913 15 C -0.120 4.120 16 C 0.159 3.841 17 N -0.758 5.758 18 C -0.244 4.244 19 H 0.090 0.910 20 C 0.003 3.997 21 N -0.935 5.935 22 Si 0.886 3.114 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.277 1.277 26 C 0.109 3.891 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.028 0.972 41 H 0.025 0.975 42 H 0.361 0.639 43 H 0.259 0.741 44 H 0.069 0.931 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.407 -15.585 -6.777 29.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.137 4.137 4 H 0.136 0.864 5 C -0.185 4.185 6 C -0.208 4.208 7 H 0.140 0.860 8 C 0.346 3.654 9 O -0.422 6.422 10 N -0.348 5.348 11 C -0.022 4.022 12 C -0.166 4.166 13 C -0.114 4.114 14 H 0.105 0.895 15 C -0.158 4.158 16 C 0.032 3.968 17 N -0.404 5.404 18 C -0.374 4.374 19 H 0.108 0.892 20 C -0.193 4.193 21 N -0.583 5.583 22 Si 0.716 3.284 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.013 4.013 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.046 0.954 41 H 0.043 0.957 42 H 0.193 0.807 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -24.708 -15.185 -6.661 29.757 hybrid contribution -0.014 0.349 1.266 1.313 sum -24.722 -14.836 -5.395 29.333 Atomic orbital electron populations 1.21742 0.95114 1.01669 1.02196 1.21156 0.96339 0.93559 1.02166 1.22498 0.91354 0.98772 1.01078 0.86439 1.23103 1.01891 1.03210 0.90276 1.22271 0.97593 0.98780 1.02184 0.85998 1.19321 0.80548 0.85643 0.79905 1.90696 1.53088 1.49026 1.49385 1.48429 1.04899 1.27573 1.53918 1.22099 0.86815 0.94541 0.98751 1.22761 0.95481 0.95143 1.03209 1.22320 0.93178 0.96040 0.99814 0.89501 1.21719 0.95567 1.00551 0.97967 1.20603 0.87578 0.95971 0.92685 1.42733 1.10902 1.73667 1.13067 1.19064 0.85804 1.32753 0.99803 0.89246 1.24691 0.95699 1.00922 0.97999 1.69704 1.04941 1.48041 1.35574 0.86524 0.77899 0.78025 0.85948 1.21079 1.21720 1.20325 1.22347 0.93573 0.89366 0.96033 0.92477 0.92488 0.92586 0.91612 0.91414 0.88291 0.87734 0.91248 0.91478 0.89381 0.90070 0.91556 0.91612 0.95402 0.95679 0.80699 0.93070 0.91229 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.87 37.16 0.37 -0.48 16 2 C -0.09 -0.58 6.22 -26.73 -0.17 -0.75 16 3 C -0.12 -0.97 5.25 -90.62 -0.48 -1.45 16 4 H 0.12 1.18 7.60 -51.93 -0.39 0.78 16 5 C -0.15 -1.10 9.88 -26.73 -0.26 -1.36 16 6 C -0.19 -1.66 5.26 -91.77 -0.48 -2.14 16 7 H 0.12 0.86 7.73 -51.93 -0.40 0.46 16 8 C 0.56 6.93 7.63 -10.99 -0.08 6.85 16 9 O -0.54 -8.79 16.51 5.56 0.09 -8.70 16 10 N -0.61 -6.96 3.33 -170.52 -0.57 -7.52 16 11 C 0.10 0.87 6.28 -3.06 -0.02 0.85 16 12 C -0.13 -1.25 5.74 -24.90 -0.14 -1.39 16 13 C -0.09 -1.08 3.04 -88.47 -0.27 -1.34 16 14 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 15 C -0.12 -1.70 4.84 -26.73 -0.13 -1.83 16 16 C 0.16 2.94 6.14 -4.04 -0.02 2.91 16 17 N -0.76 -18.02 5.41 -59.91 -0.32 -18.35 16 18 C -0.24 -6.96 10.47 -15.06 -0.16 -7.12 16 19 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 20 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 21 N -0.93 -29.48 13.97 55.49 0.78 -28.71 16 22 Si 0.89 22.22 27.74 -169.99 -4.71 17.51 16 23 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 25 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 26 C 0.11 1.29 6.38 -2.53 -0.02 1.28 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.34 7.88 -51.93 -0.41 -0.07 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.10 0.57 8.03 -51.93 -0.42 0.15 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.49 8.06 -51.93 -0.42 0.07 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.81 7.97 -51.93 -0.41 0.40 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.07 0.92 8.04 -51.93 -0.42 0.50 16 40 H 0.03 0.51 7.63 -51.93 -0.40 0.12 16 41 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.36 8.36 5.53 -40.82 -0.23 8.13 16 43 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 44 H 0.07 0.83 8.04 -51.93 -0.42 0.41 16 45 H 0.08 0.99 8.04 -51.93 -0.42 0.58 16 LS Contribution 362.51 15.07 5.46 5.46 Total: -1.00 -33.75 362.51 -9.38 -43.13 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -8.15 Total: 3.16 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -1.96 Total: -5.98 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.12 Total: -54.58 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.70 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.71 Total: 17.51 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.75 -9.38 -43.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326373177.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.764 kcal (2) G-P(sol) polarization free energy of solvation -33.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds